Wall clock time and date at job start Sun Mar 29 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.46847 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47138 * 179.97438 * 17 16 14 19 19 C 1.53002 * 115.54871 * 34.33182 * 18 17 16 20 20 C 1.53001 * 117.49984 * 248.62542 * 18 17 16 21 21 C 1.52995 * 117.49859 * 179.97438 * 18 17 16 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 29 29 H 1.08995 * 109.47448 * 60.00218 * 16 14 13 30 30 H 1.08996 * 109.47262 * 300.00235 * 17 16 14 31 31 H 1.09008 * 109.46721 * 60.00395 * 17 16 14 32 32 H 1.09001 * 109.47098 * 85.58229 * 19 18 17 33 33 H 1.08996 * 109.47322 * 205.58320 * 19 18 17 34 34 H 1.08995 * 109.47119 * 325.58690 * 19 18 17 35 35 H 1.09001 * 117.50059 * 359.97438 * 20 18 17 36 36 H 1.08992 * 117.49702 * 145.02230 * 20 18 17 37 37 H 1.09000 * 117.50161 * 214.98049 * 21 18 17 38 38 H 1.09004 * 117.49771 * 0.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 6 -1.3614 4.0592 -2.2590 18 6 -1.8336 4.7676 -3.5303 19 6 -1.4276 4.1013 -4.8465 20 6 -1.9025 6.2958 -3.5035 21 6 -3.1915 5.4709 -3.4844 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8293 -0.0605 2.9501 28 1 0.7244 4.1970 -2.7808 29 1 -0.0713 2.6987 -3.3193 30 1 -2.0782 3.2846 -1.9867 31 1 -1.2831 4.7832 -1.4479 32 1 -2.1573 3.3342 -5.1056 33 1 -1.3919 4.8507 -5.6372 34 1 -0.4444 3.6444 -4.7343 35 1 -1.6119 6.7966 -2.5799 36 1 -1.6585 6.8268 -4.4235 37 1 -3.7952 5.4595 -4.3918 38 1 -3.7484 5.4292 -2.5482 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343442142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:32 Heat of formation + Delta-G solvation = -103.527689 kcal Electronic energy + Delta-G solvation = -17522.957081 eV Core-core repulsion = 14750.953774 eV Total energy + Delta-G solvation = -2772.003307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39414 -39.29627 -37.61243 -35.49013 -33.62777 -33.10062 -29.44257 -29.02900 -26.46863 -24.99773 -23.26864 -22.42578 -21.17791 -19.66200 -18.87342 -18.41249 -17.37801 -17.18033 -16.35002 -16.11276 -15.52066 -14.87956 -14.82750 -14.59632 -13.88439 -13.71211 -13.41075 -13.31695 -13.16354 -13.08078 -12.95239 -12.80766 -12.54164 -12.38162 -12.14352 -12.08415 -11.92465 -11.75725 -11.42829 -11.16521 -10.98428 -10.80686 -10.52618 -10.45370 -8.27687 -6.44594 1.41222 1.41893 1.44325 1.56116 2.09508 2.43588 2.88221 3.01932 3.73182 3.77934 3.98636 4.04579 4.19943 4.29796 4.37023 4.39645 4.45490 4.53048 4.64871 4.82466 4.84427 4.89987 4.97402 5.06473 5.08566 5.12270 5.18519 5.21844 5.25369 5.31845 5.39583 5.48796 5.53367 5.67734 6.00027 6.17334 6.61494 7.04876 7.28300 8.79330 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.039274 B = 0.004971 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.773000 B = 5631.162013 C = 5946.503775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.223 3.777 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.367 6.367 14 C 0.440 3.560 15 O -0.549 6.549 16 C -0.103 4.103 17 C -0.063 4.063 18 C -0.134 4.134 19 C -0.124 4.124 20 C -0.174 4.174 21 C -0.173 4.173 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.270 0.730 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 7.015 -12.845 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.284 6.284 14 C 0.286 3.714 15 O -0.440 6.440 16 C -0.140 4.140 17 C -0.101 4.101 18 C -0.134 4.134 19 C -0.180 4.180 20 C -0.211 4.211 21 C -0.210 4.210 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.752 6.898 -12.362 16.643 hybrid contribution 0.698 -0.125 0.878 1.129 sum -8.053 6.773 -11.484 15.576 Atomic orbital electron populations 1.21706 0.96235 1.00562 1.00114 1.21861 0.94515 0.98127 1.02300 1.20344 0.94500 0.89325 0.78838 0.97796 1.21387 0.90640 1.39874 1.06894 0.91654 1.25811 1.04273 0.93857 0.94341 1.70026 1.37385 1.38035 1.09868 0.85160 0.77686 0.78343 0.78371 1.18763 1.20171 1.19630 1.86467 1.36415 1.63155 1.42337 1.24616 0.79277 0.76136 0.91397 1.90581 1.55963 1.59600 1.37858 1.21586 0.98929 1.01146 0.92321 1.20829 0.93995 0.99223 0.96046 1.21453 1.01592 0.94356 0.96003 1.21522 1.02164 1.00773 0.93583 1.23259 1.01654 0.92616 1.03604 1.23101 0.90437 1.03866 1.03576 0.94752 0.91995 0.94247 0.89681 0.93509 0.92065 0.86395 0.85599 0.91959 0.92470 0.91725 0.91158 0.91132 0.89435 0.87361 0.87341 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.56 71.98 0.62 -5.12 16 2 C -0.13 -6.65 5.49 30.59 0.17 -6.49 16 3 C 0.22 12.37 2.25 29.85 0.07 12.43 16 4 H 0.00 0.26 7.16 -2.38 -0.02 0.25 16 5 C -0.55 -31.67 8.90 25.60 0.23 -31.44 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 0.94 5.29 84.66 0.45 1.38 16 8 N -0.92 -52.92 11.29 21.45 0.24 -52.68 16 9 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 O -0.37 -17.77 9.81 -51.40 -0.50 -18.28 16 14 C 0.44 18.29 6.41 71.24 0.46 18.74 16 15 O -0.55 -25.96 13.12 21.99 0.29 -25.67 16 16 C -0.10 -2.86 4.82 29.85 0.14 -2.72 16 17 C -0.06 -1.63 4.69 30.60 0.14 -1.49 16 18 C -0.13 -2.59 2.46 -52.18 -0.13 -2.72 16 19 C -0.12 -1.96 9.49 71.98 0.68 -1.27 16 20 C -0.17 -3.03 9.82 30.61 0.30 -2.73 16 21 C -0.17 -2.97 9.97 30.61 0.31 -2.67 16 22 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.04 1.66 6.06 -2.38 -0.01 1.65 16 25 H 0.08 4.75 5.95 -2.39 -0.01 4.74 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 28 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.13 2.92 6.45 -2.39 -0.02 2.91 16 30 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 31 H 0.06 1.63 7.86 -2.38 -0.02 1.61 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.92 7.90 -2.39 -0.02 0.90 16 34 H 0.07 1.12 5.59 -2.39 -0.01 1.10 16 35 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 36 H 0.11 1.53 8.05 -2.39 -0.02 1.51 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -65.82 307.17 6.51 -59.31 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.02 Total: 16.19 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 3.43 Total: -24.08 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.22 Total: -43.95 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.82 6.51 -59.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343442142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.216 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds