Wall clock time and date at job start Sun Mar 29 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46968 * 2 1 4 4 C 1.53002 * 109.46845 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46747 * 177.65406 * 4 3 2 6 6 C 1.50700 * 115.54932 * 61.40484 * 5 4 3 7 7 O 1.20827 * 119.99940 * 245.58824 * 6 5 4 8 8 O 1.34230 * 120.00293 * 65.59086 * 6 5 4 9 9 C 1.45194 * 117.00420 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46797 * 29.99627 * 9 8 6 11 11 C 1.53002 * 109.47294 * 270.00146 * 9 8 6 12 12 C 1.50693 * 109.47529 * 149.99749 * 9 8 6 13 13 H 1.08003 * 119.99618 * 359.97438 * 12 9 8 14 14 C 1.37882 * 120.00346 * 180.27503 * 12 9 8 15 15 N 1.31518 * 119.99777 * 359.72759 * 14 12 9 16 16 Si 1.86792 * 120.00021 * 179.72290 * 14 12 9 17 17 H 1.48494 * 109.47567 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.47038 * 120.00188 * 16 14 12 19 19 H 1.48500 * 109.47371 * 239.99822 * 16 14 12 20 20 C 1.53007 * 117.50036 * 207.07181 * 5 4 3 21 21 C 1.53003 * 117.50266 * 275.72827 * 5 4 3 22 22 H 1.09004 * 109.46952 * 60.00201 * 1 2 3 23 23 H 1.09000 * 109.47373 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47394 * 300.00279 * 1 2 3 25 25 H 1.08999 * 109.47632 * 240.00102 * 2 1 3 26 26 H 1.08997 * 109.47335 * 119.99983 * 2 1 3 27 27 H 1.08990 * 109.47163 * 60.00147 * 3 2 1 28 28 H 1.09004 * 109.47119 * 299.99696 * 3 2 1 29 29 H 1.09001 * 109.47028 * 57.66053 * 4 3 2 30 30 H 1.08990 * 109.47374 * 297.65926 * 4 3 2 31 31 H 1.08998 * 109.47165 * 179.97438 * 11 9 8 32 32 H 1.09001 * 109.46919 * 300.00016 * 11 9 8 33 33 H 1.09001 * 109.47337 * 59.99053 * 11 9 8 34 34 H 0.96993 * 120.00093 * 180.02562 * 15 14 12 35 35 H 1.08998 * 117.49675 * 215.00977 * 20 5 4 36 36 H 1.09006 * 117.49362 * 0.02562 * 20 5 4 37 37 H 1.08999 * 117.49767 * 359.97438 * 21 5 4 38 38 H 1.09001 * 117.49649 * 144.97192 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8838 -0.0584 6 6 3.6825 3.7618 1.1001 7 8 2.9489 4.7048 0.9197 8 8 4.1435 3.4964 2.3325 9 6 3.7190 4.3838 3.4005 10 1 2.7297 4.7800 3.1719 11 6 4.7138 5.5391 3.5294 12 6 3.6664 3.6191 4.6979 13 1 3.9256 2.5708 4.7178 14 6 3.2813 4.2562 5.8586 15 7 2.9650 5.5325 5.8342 16 14 3.2086 3.3063 7.4653 17 1 3.6100 1.8969 7.2259 18 1 4.1350 3.9242 8.4479 19 1 1.8237 3.3431 8.0000 20 6 5.4550 3.1216 -0.6858 21 6 4.1882 3.5390 -1.4368 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9564 -0.8900 29 1 3.9336 0.8927 -0.8674 30 1 3.9329 0.9657 0.9110 31 1 4.3948 6.2055 4.3308 32 1 5.7031 5.1429 3.7579 33 1 4.7519 6.0922 2.5909 34 1 2.6945 5.9808 6.6507 35 1 6.0722 3.9129 -0.2605 36 1 5.9962 2.2511 -1.0568 37 1 3.8966 2.9431 -2.3016 38 1 3.9716 4.6051 -1.5057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343978026.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:06 Heat of formation + Delta-G solvation = -93.075349 kcal Electronic energy + Delta-G solvation = -17693.521478 eV Core-core repulsion = 14921.971418 eV Total energy + Delta-G solvation = -2771.550059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90581 -37.42390 -35.51129 -34.78414 -33.21834 -29.96106 -29.52659 -25.35178 -24.98212 -23.27207 -22.42707 -20.93292 -20.73713 -18.76576 -16.76363 -16.48857 -15.76381 -15.38146 -15.07032 -14.55559 -14.12362 -13.80105 -13.42552 -12.98995 -12.73119 -12.25797 -12.00023 -11.90225 -11.49279 -11.35575 -11.27010 -11.18602 -11.07969 -10.93926 -10.81995 -10.48344 -10.34668 -10.27945 -10.19987 -9.82281 -9.54479 -9.42725 -8.87828 -8.48744 -6.17753 -4.24335 2.97260 3.23771 3.30265 3.35084 3.55625 3.89993 4.34075 4.61381 4.87601 4.98923 5.10717 5.15427 5.18945 5.25624 5.50204 5.59316 5.67066 5.72296 5.84764 5.89643 5.95332 6.03781 6.07683 6.16783 6.20321 6.25488 6.43847 6.50742 6.65586 6.89180 6.92796 7.19630 7.61378 7.73859 7.95400 8.15651 8.68099 8.92635 9.41237 10.89947 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.007049 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.644845 B = 3971.499734 C = 4880.822526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.073 4.073 5 C -0.130 4.130 6 C 0.489 3.511 7 O -0.519 6.519 8 O -0.350 6.350 9 C 0.214 3.786 10 H 0.045 0.955 11 C -0.154 4.154 12 C -0.518 4.518 13 H 0.069 0.931 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.911 3.089 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.156 4.156 21 C -0.150 4.150 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.014 0.986 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -8.172 -12.114 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.332 3.668 7 O -0.409 6.409 8 O -0.266 6.266 9 C 0.161 3.839 10 H 0.063 0.937 11 C -0.212 4.212 12 C -0.557 4.557 13 H 0.087 0.913 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.738 3.262 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.193 4.193 21 C -0.187 4.187 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.892 -7.730 -11.973 14.279 hybrid contribution -0.127 -0.160 0.963 0.984 sum 0.765 -7.890 -11.011 13.567 Atomic orbital electron populations 1.21773 0.96023 1.01220 1.02018 1.21503 0.95848 0.96806 1.01783 1.21611 0.94805 0.96753 1.02772 1.21077 0.95770 0.91213 1.03002 1.21028 1.03082 0.96894 0.92122 1.22147 0.77442 0.82644 0.84595 1.90587 1.34983 1.29944 1.85374 1.86487 1.66817 1.56712 1.16569 1.20639 0.94925 0.86809 0.81496 0.93684 1.22156 0.99037 0.99536 1.00452 1.21066 1.46501 0.97223 0.90862 0.91253 1.24893 0.94744 0.95133 0.99252 1.69912 1.45009 1.09345 1.28516 0.86234 0.77800 0.79964 0.82249 1.19449 1.20693 1.20742 1.23080 0.90003 1.03773 1.02455 1.23063 1.00617 1.01974 0.93008 0.92922 0.93031 0.92484 0.92327 0.91834 0.91579 0.91854 0.91096 0.90262 0.88254 0.94415 0.96653 0.92468 0.88265 0.87768 0.87882 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.15 0.37 -1.32 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.12 -1.71 5.01 -26.73 -0.13 -1.84 16 4 C -0.07 -1.00 5.10 -26.73 -0.14 -1.14 16 5 C -0.13 -2.09 2.05 -155.66 -0.32 -2.41 16 6 C 0.49 10.68 6.45 36.01 0.23 10.91 16 7 O -0.52 -12.75 15.92 -18.75 -0.30 -13.05 16 8 O -0.35 -8.63 9.86 -39.26 -0.39 -9.01 16 9 C 0.21 5.89 2.56 -27.89 -0.07 5.81 16 10 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 11 C -0.15 -4.00 9.33 37.16 0.35 -3.66 16 12 C -0.52 -14.79 8.89 -34.44 -0.31 -15.10 16 13 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 14 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 15 N -0.89 -25.61 11.33 55.43 0.63 -24.99 16 16 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.16 -2.04 9.94 -26.69 -0.27 -2.30 16 21 C -0.15 -1.97 9.77 -26.69 -0.26 -2.23 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.13 7.68 -51.93 -0.40 0.74 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.77 8.11 -51.93 -0.42 0.34 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.10 2.74 6.08 -51.93 -0.32 2.42 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.46 8.00 -51.93 -0.42 1.05 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -30.83 319.07 -7.61 -38.44 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.54 Total: 0.77 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.80 Total: -13.22 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.99 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.69 Total: -22.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.83 -7.61 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343978026.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.640 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds