Wall clock time and date at job start Sun Mar 29 2020 22:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46952 * 2 1 4 4 C 1.53005 * 109.47028 * 119.99853 * 2 1 3 5 5 H 1.08997 * 109.47006 * 300.00120 * 4 2 1 6 6 C 1.53002 * 109.46847 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.46668 * 60.00237 * 4 2 1 8 8 O 1.20823 * 120.00658 * 359.97438 * 7 4 2 9 9 O 1.34238 * 119.99613 * 179.97438 * 7 4 2 10 10 C 1.45204 * 116.99974 * 179.97438 * 9 7 4 11 11 H 1.08997 * 109.46844 * 330.00317 * 10 9 7 12 12 C 1.50702 * 109.47064 * 210.00105 * 10 9 7 13 13 H 1.08003 * 119.99700 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99831 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00337 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99905 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47052 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47073 * 120.00271 * 16 14 12 19 19 H 1.48502 * 109.46904 * 240.00050 * 16 14 12 20 20 C 1.52996 * 109.46855 * 90.00152 * 10 9 7 21 21 C 1.53002 * 117.49888 * 231.25352 * 20 10 9 22 22 C 1.53000 * 117.50107 * 299.91114 * 20 10 9 23 23 H 1.09007 * 109.46933 * 299.99863 * 1 2 3 24 24 H 1.08998 * 109.47204 * 59.99845 * 1 2 3 25 25 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46914 * 240.00124 * 2 1 3 27 27 H 1.08997 * 109.47209 * 60.00305 * 3 2 1 28 28 H 1.09005 * 109.46893 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47293 * 300.00101 * 3 2 1 30 30 H 1.08996 * 109.46580 * 60.00820 * 6 4 2 31 31 H 1.09002 * 109.46756 * 179.97438 * 6 4 2 32 32 H 1.08997 * 109.47262 * 300.00374 * 6 4 2 33 33 H 0.96991 * 120.00328 * 179.97438 * 15 14 12 34 34 H 1.09002 * 115.54951 * 85.58326 * 20 10 9 35 35 H 1.09000 * 117.49996 * 215.00804 * 21 20 10 36 36 H 1.08999 * 117.49664 * 0.02562 * 21 20 10 37 37 H 1.09008 * 117.49673 * 359.97438 * 22 20 10 38 38 H 1.08999 * 117.49959 * 144.99502 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 1.5376 -2.1420 1.2492 8 8 0.8427 -2.5372 0.3433 9 8 1.8623 -2.9687 2.2557 10 6 1.3427 -4.3230 2.1902 11 1 0.3895 -4.3212 1.6616 12 6 1.1415 -4.8520 3.5869 13 1 1.3800 -4.2322 4.4386 14 6 0.6521 -6.1268 3.7774 15 7 0.3613 -6.8814 2.7403 16 14 0.4021 -6.7823 5.5087 17 1 0.8022 -5.7450 6.4933 18 1 -1.0288 -7.1269 5.7057 19 1 1.2350 -7.9963 5.7034 20 6 2.3374 -5.2154 1.4452 21 6 1.7987 -6.0640 0.2916 22 6 2.6753 -4.8435 0.0001 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 3.9336 0.3058 1.2488 31 1 3.9333 -1.2352 2.1392 32 1 3.9330 -1.2358 0.3590 33 1 0.0174 -7.7783 2.8743 34 1 3.1341 -5.6420 2.0546 35 1 2.2410 -7.0489 0.1421 36 1 0.7358 -5.9862 0.0633 37 1 2.1886 -3.9632 -0.4201 38 1 3.6944 -5.0254 -0.3413 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547068.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:45 Heat of formation + Delta-G solvation = -98.529906 kcal Electronic energy + Delta-G solvation = -18227.093221 eV Core-core repulsion = 15455.306635 eV Total energy + Delta-G solvation = -2771.786587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57202 -38.74229 -37.13192 -36.52477 -34.71830 -31.91984 -29.80072 -28.12104 -25.83697 -24.96308 -23.09920 -22.67287 -21.20881 -20.49064 -18.89841 -18.27155 -17.56640 -16.90691 -16.42354 -15.79563 -15.48702 -15.21672 -14.73828 -14.55490 -13.94314 -13.62422 -13.23499 -13.17407 -12.99355 -12.90324 -12.84611 -12.77714 -12.45680 -12.24561 -12.16693 -11.97248 -11.77372 -11.61317 -11.47905 -11.33345 -10.95148 -10.78937 -10.58833 -10.40897 -8.22235 -6.39112 1.41152 1.41489 1.45246 1.54837 2.07999 2.44022 3.05161 3.22783 3.67211 3.89828 3.98273 4.10351 4.27701 4.30784 4.42566 4.44276 4.54657 4.63949 4.74099 4.79111 4.84560 4.94020 4.95091 5.06508 5.10285 5.14026 5.21419 5.26749 5.36070 5.38940 5.45637 5.50044 5.54369 5.64080 5.89526 6.22424 6.65603 7.09476 7.32192 8.84268 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.006855 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.037757 B = 4083.868421 C = 4414.351289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.077 4.077 5 H 0.115 0.885 6 C -0.139 4.139 7 C 0.447 3.553 8 O -0.540 6.540 9 O -0.363 6.363 10 C 0.254 3.746 11 H 0.004 0.996 12 C -0.555 4.555 13 H 0.062 0.938 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.974 3.026 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.273 1.273 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.197 4.197 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 12.479 -3.696 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.094 4.094 3 C -0.197 4.197 4 C -0.096 4.096 5 H 0.132 0.868 6 C -0.196 4.196 7 C 0.292 3.708 8 O -0.431 6.431 9 O -0.280 6.280 10 C 0.201 3.799 11 H 0.022 0.978 12 C -0.593 4.593 13 H 0.080 0.920 14 C -0.177 4.177 15 N -0.532 5.532 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.149 4.149 21 C -0.162 4.162 22 C -0.234 4.234 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.015 12.138 -3.997 13.728 hybrid contribution -0.640 -1.081 0.663 1.420 sum 4.375 11.057 -3.333 12.350 Atomic orbital electron populations 1.22060 0.95685 1.02052 1.02014 1.20973 0.95816 0.97277 0.95346 1.21864 1.02007 0.92925 1.02888 1.21301 0.99285 0.86656 1.02379 0.86758 1.21805 0.90709 1.04550 1.02545 1.24570 0.76845 0.90113 0.79231 1.90492 1.37223 1.78094 1.37297 1.86479 1.69333 1.25716 1.46436 1.19781 0.90503 0.73384 0.96229 0.97781 1.21227 1.46301 1.00475 0.91280 0.91971 1.25722 0.94070 0.96183 1.01764 1.70167 1.42414 1.09466 1.31159 0.85277 0.77907 0.78272 0.78779 1.19039 1.20292 1.19864 1.22385 1.00948 1.02591 0.88980 1.22275 0.97678 0.94235 1.01979 1.23257 1.00623 0.99994 0.99539 0.92501 0.91513 0.93675 0.91836 0.91607 0.90791 0.91431 0.87758 0.92205 0.92714 0.92427 0.90378 0.89340 0.91829 0.89572 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 8.87 71.98 0.64 -3.81 16 2 C -0.08 -1.89 2.15 -10.79 -0.02 -1.91 16 3 C -0.14 -2.33 8.84 71.98 0.64 -1.69 16 4 C -0.08 -2.22 2.42 -11.54 -0.03 -2.25 16 5 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 6 C -0.14 -3.30 8.77 71.98 0.63 -2.66 16 7 C 0.45 18.57 6.19 71.24 0.44 19.01 16 8 O -0.54 -25.05 10.70 21.97 0.24 -24.81 16 9 O -0.36 -17.62 9.75 -51.49 -0.50 -18.12 16 10 C 0.25 13.97 2.25 29.85 0.07 14.03 16 11 H 0.00 0.28 6.91 -2.39 -0.02 0.26 16 12 C -0.56 -31.88 8.88 25.60 0.23 -31.65 16 13 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 14 C 0.02 1.36 5.30 84.65 0.45 1.80 16 15 N -0.90 -50.96 11.43 21.45 0.25 -50.71 16 16 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 C -0.13 -6.56 4.47 -10.79 -0.05 -6.61 16 21 C -0.12 -5.90 9.04 30.62 0.28 -5.63 16 22 C -0.20 -8.52 9.80 30.62 0.30 -8.22 16 23 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.62 5.52 -2.39 -0.01 1.60 16 26 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.02 6.43 -2.38 -0.02 1.01 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.69 6.43 -2.39 -0.02 1.68 16 31 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.27 14.25 8.31 -92.72 -0.77 13.48 16 34 H 0.08 4.05 8.11 -2.39 -0.02 4.03 16 35 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.06 3.31 8.05 -2.39 -0.02 3.29 16 37 H 0.09 3.89 5.37 -2.38 -0.01 3.88 16 38 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 Total: -1.00 -64.88 304.02 6.59 -58.29 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.02 Total: 19.61 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.57 Total: -29.59 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.25 Total: -50.71 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.27 Total: -42.93 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.88 6.59 -58.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547068.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.244 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds