Wall clock time and date at job start Sun Mar 29 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99777 * 2 1 4 4 C 1.50696 * 109.47336 * 270.00009 * 3 2 1 5 5 H 1.08004 * 119.99803 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00198 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00074 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99952 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47469 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47208 * 119.99642 * 8 6 4 11 11 H 1.48500 * 109.47118 * 239.99466 * 8 6 4 12 12 C 1.34770 * 120.00141 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00056 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99944 * 0.02562 * 12 2 1 15 15 C 1.53006 * 109.46881 * 179.97438 * 14 12 2 16 16 H 1.08995 * 110.21574 * 53.07245 * 15 14 12 17 17 C 1.54480 * 110.24341 * 175.00065 * 15 14 12 18 18 C 1.54637 * 101.79655 * 144.39766 * 17 15 14 19 19 C 1.51339 * 104.16489 * 335.24730 * 18 17 15 20 20 O 1.21285 * 124.92565 * 196.24857 * 19 18 17 21 21 N 1.34412 * 110.13391 * 16.20052 * 19 18 17 22 22 H 1.09002 * 109.47442 * 269.99815 * 1 2 3 23 23 H 1.09005 * 109.47377 * 30.00177 * 1 2 3 24 24 H 1.09008 * 109.46804 * 149.99821 * 1 2 3 25 25 H 1.08999 * 109.46928 * 29.99856 * 3 2 1 26 26 H 1.09000 * 109.47347 * 149.99779 * 3 2 1 27 27 H 0.97001 * 120.00003 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46901 * 60.00158 * 14 12 2 29 29 H 1.08994 * 109.47159 * 299.99789 * 14 12 2 30 30 H 1.09002 * 110.96988 * 262.53624 * 17 15 14 31 31 H 1.09003 * 110.97155 * 26.26136 * 17 15 14 32 32 H 1.09001 * 110.48391 * 93.89928 * 18 17 15 33 33 H 1.08997 * 110.48457 * 216.54082 * 18 17 15 34 34 H 0.97001 * 124.35121 * 180.45650 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6731 8 14 3.4387 3.4164 -3.4339 9 1 2.8617 2.4160 -4.3673 10 1 2.8015 4.7373 -3.6676 11 1 4.9014 3.5243 -3.6668 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0005 16 1 3.0915 -3.5221 0.8182 17 6 1.6297 -4.9798 0.1268 18 6 2.4907 -5.9068 -0.7623 19 6 3.1679 -4.9641 -1.7334 20 8 3.7059 -5.3006 -2.7670 21 7 3.0857 -3.6998 -1.2846 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6083 2.0284 0.5138 26 1 3.1499 1.1385 0.5139 27 1 4.0315 4.4432 -0.8504 28 1 0.7591 -2.5302 -0.8897 29 1 0.7584 -2.5298 0.8902 30 1 1.6224 -5.3268 1.1601 31 1 0.6148 -4.8984 -0.2624 32 1 3.2324 -6.4316 -0.1602 33 1 1.8596 -6.6171 -1.2963 34 1 3.4463 -2.9291 -1.7503 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347380257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:32 Heat of formation + Delta-G solvation = -106.349351 kcal Electronic energy + Delta-G solvation = -17316.448453 eV Core-core repulsion = 14440.782447 eV Total energy + Delta-G solvation = -2875.666007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.49482 -40.29095 -37.63261 -36.50973 -34.76191 -32.18975 -32.07130 -29.69241 -27.36062 -26.41390 -24.40808 -22.19220 -21.44269 -19.96141 -18.73108 -18.28540 -17.65776 -17.45859 -16.99673 -16.29868 -16.20334 -15.61260 -14.84314 -14.56700 -14.39516 -14.15420 -13.80865 -13.52825 -13.45751 -13.35660 -13.10646 -12.89908 -12.64732 -12.51280 -12.26144 -12.18699 -11.85046 -11.69436 -10.91092 -10.67775 -10.55435 -10.08308 -9.39626 -8.25561 -6.40098 1.32721 1.35660 1.46597 1.60549 1.87436 2.30848 2.46863 2.48411 3.04134 3.42788 3.57594 3.83696 3.93806 4.26387 4.37242 4.46008 4.55980 4.65053 4.76943 4.90278 4.91962 4.99672 5.04371 5.16398 5.22880 5.30894 5.54504 5.81197 5.84565 6.04097 6.15822 6.68382 6.82394 7.22726 7.26863 7.50971 8.81283 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.006109 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.750547 B = 4582.578037 C = 5201.866148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.267 1.267 11 H -0.283 1.283 12 C 0.487 3.513 13 O -0.598 6.598 14 C -0.134 4.134 15 C 0.137 3.863 16 H 0.078 0.922 17 C -0.109 4.109 18 C -0.144 4.144 19 C 0.499 3.501 20 O -0.603 6.603 21 N -0.724 5.724 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.022 0.978 26 H -0.002 1.002 27 H 0.267 0.733 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -16.218 5.126 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.192 1.192 11 H -0.209 1.209 12 C 0.277 3.723 13 O -0.479 6.479 14 C -0.174 4.174 15 C 0.032 3.968 16 H 0.096 0.904 17 C -0.147 4.147 18 C -0.184 4.184 19 C 0.288 3.712 20 O -0.486 6.486 21 N -0.376 5.376 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.040 0.960 26 H 0.016 0.984 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.657 -16.295 4.740 20.039 hybrid contribution 1.010 1.550 -1.141 2.174 sum -9.647 -14.745 3.599 17.985 Atomic orbital electron populations 1.21966 0.77766 1.03983 1.02823 1.48218 1.08489 1.06448 1.71162 1.18722 0.91179 0.80785 0.95701 1.21732 1.36569 1.06421 0.93197 0.93081 1.25816 0.95027 0.96547 1.01678 1.70045 1.39002 1.14869 1.32843 0.85424 0.77826 0.78469 0.79423 1.19389 1.19240 1.20934 1.21573 0.88010 0.86847 0.75868 1.90660 1.16601 1.88164 1.52517 1.22168 0.98900 0.88709 1.07631 1.21725 0.93565 0.96288 0.85175 0.90440 1.22794 0.99252 0.89560 1.03047 1.22406 1.01011 0.97791 0.97185 1.21949 0.78494 0.84999 0.85768 1.90694 1.48847 1.80984 1.28056 1.46732 1.57798 1.08978 1.24059 0.90645 0.92207 0.88380 0.95993 0.98395 0.92411 0.86766 0.83338 0.85506 0.87301 0.86308 0.86252 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 10.24 127.77 1.31 3.32 16 2 N -0.61 -24.16 2.86 -851.13 -2.43 -26.59 16 3 C 0.26 13.65 5.16 85.63 0.44 14.09 16 4 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.48 5.46 84.65 0.46 0.94 16 7 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 8 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.49 18.05 7.50 87.66 0.66 18.71 16 13 O -0.60 -28.58 14.62 -3.03 -0.04 -28.63 16 14 C -0.13 -2.78 3.86 29.85 0.12 -2.66 16 15 C 0.14 2.85 3.00 45.45 0.14 2.99 16 16 H 0.08 1.82 7.91 -2.39 -0.02 1.80 16 17 C -0.11 -1.09 6.68 31.65 0.21 -0.88 16 18 C -0.14 -2.19 6.86 30.61 0.21 -1.98 16 19 C 0.50 14.44 8.43 87.92 0.74 15.18 16 20 O -0.60 -23.66 18.03 -3.04 -0.05 -23.72 16 21 N -0.72 -21.24 5.62 -439.37 -2.47 -23.71 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.75 8.07 -2.38 -0.02 1.73 16 24 H 0.10 1.77 6.44 -2.38 -0.02 1.76 16 25 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 26 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.11 2.02 7.40 -2.39 -0.02 2.00 16 29 H 0.15 1.77 8.11 -2.39 -0.02 1.75 16 30 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 0.65 7.91 -2.39 -0.02 0.63 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.40 14.45 8.12 -92.71 -0.75 13.70 16 Total: -1.00 -83.42 290.00 2.19 -81.24 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.35 Total: 10.96 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 4.52 Total: 18.90 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.62 Total: -106.27 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.10 Total: -52.34 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -83.42 2.19 -81.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347380257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.113 kcal (2) G-P(sol) polarization free energy of solvation -83.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds