Wall clock time and date at job start Sun Mar 29 2020 22:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47092 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99657 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00231 * 180.02562 * 12 11 10 15 15 C 1.47022 * 125.64503 * 0.02562 * 14 12 11 16 16 C 1.54320 * 107.26718 * 181.02024 * 15 14 12 17 17 C 1.55154 * 102.94307 * 22.20000 * 16 15 14 18 18 H 1.08993 * 111.01249 * 82.60674 * 17 16 15 19 19 C 1.53002 * 111.00374 * 206.42234 * 17 16 15 20 20 N 1.46901 * 109.46916 * 293.54397 * 19 17 16 21 21 C 1.47423 * 125.64977 * 179.71698 * 14 12 11 22 22 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 24 24 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 25 25 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 26 26 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 27 27 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 28 28 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 29 29 H 1.08998 * 109.88105 * 300.43916 * 15 14 12 30 30 H 1.09003 * 109.88088 * 61.45307 * 15 14 12 31 31 H 1.09007 * 110.71774 * 140.55912 * 16 15 14 32 32 H 1.08992 * 110.72216 * 263.65086 * 16 15 14 33 33 H 1.09001 * 109.47276 * 53.53793 * 19 17 16 34 34 H 1.08998 * 109.47463 * 173.54305 * 19 17 16 35 35 H 1.00896 * 111.00222 * 56.04378 * 20 19 17 36 36 H 1.00901 * 111.00171 * 180.02562 * 20 19 17 37 37 H 1.08993 * 110.36705 * 274.75194 * 21 14 12 38 38 H 1.09001 * 110.36180 * 37.06840 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 8 3.6521 -5.9108 -0.0013 14 7 2.0105 -7.4033 -0.0030 15 6 0.5985 -7.8129 -0.0042 16 6 0.5691 -9.3556 0.0210 17 6 1.9589 -9.7202 0.6063 18 1 1.9521 -9.6622 1.6946 19 6 2.4053 -11.1063 0.1367 20 7 1.5163 -12.1266 0.7083 21 6 2.8536 -8.6126 -0.0096 22 1 -0.4849 -0.8401 0.0004 23 1 0.6248 -2.5571 0.8897 24 1 0.6241 -2.5567 -0.8903 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6044 0.8894 27 1 0.8535 -5.0452 0.8885 28 1 0.8541 -5.0446 -0.8914 29 1 0.0972 -7.4180 0.8794 30 1 0.1067 -7.4451 -0.9048 31 1 -0.2292 -9.7155 0.6702 32 1 0.4547 -9.7556 -0.9864 33 1 2.3600 -11.1534 -0.9513 34 1 3.4279 -11.2897 0.4662 35 1 0.5534 -11.9415 0.4704 36 1 1.7906 -13.0516 0.4131 37 1 3.1355 -8.8729 -1.0298 38 1 3.7421 -8.4589 0.6029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349824885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:23 Heat of formation + Delta-G solvation = -63.337024 kcal Electronic energy + Delta-G solvation = -16918.292093 eV Core-core repulsion = 14180.324336 eV Total energy + Delta-G solvation = -2737.967758 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09789 -37.94207 -34.94546 -34.44773 -32.16059 -31.09442 -29.56845 -27.59476 -24.93934 -23.54678 -22.86040 -20.67970 -20.47418 -18.97184 -17.17535 -16.80520 -16.43754 -15.92732 -15.61116 -14.78064 -14.52192 -13.97444 -13.68343 -13.64966 -13.18114 -13.01582 -12.82315 -12.69489 -12.31288 -11.46468 -11.44749 -11.42819 -11.14159 -11.05264 -10.83162 -10.68362 -10.07601 -9.82121 -9.78576 -9.50950 -9.17028 -8.66043 -8.47839 -8.26771 -6.31121 -3.98936 2.85712 2.99101 3.48314 3.52225 3.68289 3.95127 4.21081 4.32468 4.58766 4.60547 4.90623 4.93414 4.98131 5.09422 5.24110 5.38944 5.44012 5.46113 5.48312 5.56404 5.61978 5.67727 5.78184 5.93516 6.12570 6.28544 6.61494 6.64558 6.79117 6.95521 7.01552 7.46847 7.55789 7.59149 8.29663 8.36393 8.54244 8.95210 9.72785 11.09865 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.070601 B = 0.003601 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.497920 B = 7772.893397 C = 8091.687055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.050 0.950 9 C 0.008 3.992 10 C -0.088 4.088 11 C -0.134 4.134 12 C 0.529 3.471 13 O -0.536 6.536 14 N -0.628 5.628 15 C 0.101 3.899 16 C -0.129 4.129 17 C -0.101 4.101 18 H 0.094 0.906 19 C 0.072 3.928 20 N -0.851 5.851 21 C 0.110 3.890 22 H 0.268 0.732 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.341 0.659 36 H 0.343 0.657 37 H 0.064 0.936 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 -23.879 -0.682 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.068 0.932 9 C -0.029 4.029 10 C -0.126 4.126 11 C -0.174 4.174 12 C 0.319 3.681 13 O -0.412 6.412 14 N -0.364 5.364 15 C -0.022 4.022 16 C -0.167 4.167 17 C -0.121 4.121 18 H 0.112 0.888 19 C -0.059 4.059 20 N -0.381 5.381 21 C -0.013 4.013 22 H 0.078 0.922 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.082 0.918 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.354 -21.740 0.014 21.743 hybrid contribution -0.175 -2.009 -1.015 2.257 sum 0.179 -23.749 -1.001 23.771 Atomic orbital electron populations 1.70761 1.06872 1.30487 1.47216 1.25865 0.96574 1.02754 0.93842 0.83510 0.74704 0.75029 0.76749 1.21461 1.21032 1.21453 1.22113 0.94497 0.91984 1.55134 0.93177 1.19258 0.94597 0.93277 0.95805 1.21323 0.98370 0.91002 1.01947 1.21835 0.98094 0.93921 1.03511 1.20934 0.90092 0.82264 0.74784 1.90686 1.17303 1.83864 1.49332 1.48610 1.07296 1.05351 1.75159 1.22001 0.83029 0.94913 1.02245 1.22707 0.97813 0.94551 1.01637 1.22452 0.94758 0.93338 1.01510 0.88800 1.21677 0.97398 0.90550 0.96248 1.58658 1.06775 1.05412 1.67231 1.22179 0.94600 0.83887 1.00648 0.92195 0.97530 0.97530 0.92531 0.92497 0.89498 0.89551 0.91088 0.91209 0.89746 0.90844 0.95119 0.90558 0.84653 0.84489 0.91767 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.71 13.65 55.43 0.76 -27.96 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 26.25 29.90 -169.99 -5.08 21.16 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.60 -17.90 9.11 -34.44 -0.31 -18.21 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 10 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.13 -2.35 4.89 -27.88 -0.14 -2.49 16 12 C 0.53 9.24 7.85 -10.98 -0.09 9.16 16 13 O -0.54 -11.45 16.24 5.55 0.09 -11.36 16 14 N -0.63 -8.35 3.32 -170.39 -0.57 -8.91 16 15 C 0.10 0.98 6.48 -3.07 -0.02 0.96 16 16 C -0.13 -0.90 5.62 -24.90 -0.14 -1.04 16 17 C -0.10 -0.82 3.31 -88.35 -0.29 -1.11 16 18 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 19 C 0.07 0.48 6.29 -3.82 -0.02 0.45 16 20 N -0.85 -5.00 9.62 -10.37 -0.10 -5.10 16 21 C 0.11 1.22 6.38 -2.41 -0.02 1.21 16 22 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 23 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 24 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 25 H 0.06 1.34 8.10 -51.93 -0.42 0.91 16 26 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 0.45 8.02 -51.93 -0.42 0.04 16 33 H 0.03 0.19 8.11 -51.93 -0.42 -0.23 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.34 1.65 8.21 -39.29 -0.32 1.33 16 36 H 0.34 1.49 9.08 -39.29 -0.36 1.14 16 37 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 38 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -34.95 311.82 -8.05 -43.00 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.48 Total: -2.71 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.36 Total: -12.83 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.09 Total: -41.97 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.08 Total: 21.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.95 -8.05 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349824885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.336 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds