Wall clock time and date at job start Sun Mar 29 2020 22:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47092 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99657 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00231 * 180.02562 * 12 11 10 15 15 C 1.47022 * 125.64503 * 0.02562 * 14 12 11 16 16 C 1.54320 * 107.26718 * 181.02024 * 15 14 12 17 17 C 1.55154 * 102.94307 * 22.20000 * 16 15 14 18 18 H 1.08993 * 111.01249 * 82.60674 * 17 16 15 19 19 C 1.53002 * 111.00374 * 206.42234 * 17 16 15 20 20 N 1.46901 * 109.46916 * 293.54397 * 19 17 16 21 21 C 1.47423 * 125.64977 * 179.71698 * 14 12 11 22 22 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 24 24 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 25 25 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 26 26 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 27 27 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 28 28 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 29 29 H 1.08998 * 109.88105 * 300.43916 * 15 14 12 30 30 H 1.09003 * 109.88088 * 61.45307 * 15 14 12 31 31 H 1.09007 * 110.71774 * 140.55912 * 16 15 14 32 32 H 1.08992 * 110.72216 * 263.65086 * 16 15 14 33 33 H 1.09001 * 109.47276 * 53.53793 * 19 17 16 34 34 H 1.08998 * 109.47463 * 173.54305 * 19 17 16 35 35 H 1.00896 * 111.00222 * 56.04378 * 20 19 17 36 36 H 1.00901 * 111.00171 * 180.02562 * 20 19 17 37 37 H 1.08993 * 110.36705 * 274.75194 * 21 14 12 38 38 H 1.09001 * 110.36180 * 37.06840 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 8 3.6521 -5.9108 -0.0013 14 7 2.0105 -7.4033 -0.0030 15 6 0.5985 -7.8129 -0.0042 16 6 0.5691 -9.3556 0.0210 17 6 1.9589 -9.7202 0.6063 18 1 1.9521 -9.6622 1.6946 19 6 2.4053 -11.1063 0.1367 20 7 1.5163 -12.1266 0.7083 21 6 2.8536 -8.6126 -0.0096 22 1 -0.4849 -0.8401 0.0004 23 1 0.6248 -2.5571 0.8897 24 1 0.6241 -2.5567 -0.8903 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6044 0.8894 27 1 0.8535 -5.0452 0.8885 28 1 0.8541 -5.0446 -0.8914 29 1 0.0972 -7.4180 0.8794 30 1 0.1067 -7.4451 -0.9048 31 1 -0.2292 -9.7155 0.6702 32 1 0.4547 -9.7556 -0.9864 33 1 2.3600 -11.1534 -0.9513 34 1 3.4279 -11.2897 0.4662 35 1 0.5534 -11.9415 0.4704 36 1 1.7906 -13.0516 0.4131 37 1 3.1355 -8.8729 -1.0298 38 1 3.7421 -8.4589 0.6029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349824885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:23 Heat of formation + Delta-G solvation = -88.446593 kcal Electronic energy + Delta-G solvation = -16919.380926 eV Core-core repulsion = 14180.324336 eV Total energy + Delta-G solvation = -2739.056590 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22535 -39.01567 -36.49000 -35.67184 -34.10915 -32.04479 -30.41396 -29.29484 -26.25311 -24.92333 -24.02666 -22.42256 -21.24615 -20.19292 -19.00219 -18.01738 -17.64216 -16.84151 -16.60786 -15.97138 -15.65906 -15.59084 -15.16419 -14.82342 -14.54224 -14.13605 -13.94271 -13.57993 -13.50101 -13.21837 -13.07983 -12.69806 -12.55187 -12.11996 -11.98966 -11.81179 -11.76125 -11.71256 -11.66229 -11.05549 -10.64253 -10.55085 -9.75736 -9.59418 -8.71043 -6.40577 1.50507 1.51002 1.60278 1.79155 1.89336 2.55207 3.13684 3.27564 3.54710 3.61806 3.79685 4.02272 4.06134 4.12648 4.24452 4.33350 4.39197 4.50977 4.59646 4.70453 4.72339 4.75591 4.86689 4.90335 4.93679 4.94589 5.09139 5.24815 5.34441 5.41647 5.48250 6.00191 6.17151 6.23848 6.37838 6.58582 6.62489 7.05385 7.39545 8.70891 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.070601 B = 0.003601 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.497920 B = 7772.893397 C = 8091.687055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.119 2.881 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.626 4.626 8 H 0.041 0.959 9 C 0.011 3.989 10 C -0.076 4.076 11 C -0.123 4.123 12 C 0.526 3.474 13 O -0.587 6.587 14 N -0.622 5.622 15 C 0.089 3.911 16 C -0.117 4.117 17 C -0.090 4.090 18 H 0.083 0.917 19 C 0.078 3.922 20 N -0.858 5.858 21 C 0.104 3.896 22 H 0.258 0.742 23 H -0.001 1.001 24 H -0.001 1.001 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.348 0.652 36 H 0.352 0.648 37 H 0.072 0.928 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -25.223 -0.862 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.234 4.234 3 Si 0.940 3.060 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.664 4.664 8 H 0.060 0.940 9 C -0.026 4.026 10 C -0.114 4.114 11 C -0.162 4.162 12 C 0.316 3.684 13 O -0.468 6.468 14 N -0.356 5.356 15 C -0.033 4.033 16 C -0.155 4.155 17 C -0.109 4.109 18 H 0.102 0.898 19 C -0.054 4.054 20 N -0.389 5.389 21 C -0.019 4.019 22 H 0.068 0.932 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.091 0.909 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.505 -23.162 -0.163 23.168 hybrid contribution 0.043 -1.680 -0.955 1.933 sum -0.462 -24.842 -1.117 24.871 Atomic orbital electron populations 1.70887 1.07670 1.30016 1.48678 1.27416 0.96707 1.06661 0.92600 0.82915 0.74067 0.71108 0.77922 1.19629 1.20219 1.19962 1.22544 0.94505 0.93917 1.55387 0.94032 1.19175 0.94838 0.93702 0.94855 1.21050 0.97440 0.92649 1.00298 1.21636 0.97770 0.91447 1.05395 1.20764 0.89145 0.83628 0.74868 1.90662 1.19068 1.84868 1.52183 1.48603 1.09558 1.04606 1.72791 1.22362 0.80696 0.97062 1.03162 1.22714 0.97469 0.92288 1.03007 1.22333 0.94766 0.93116 1.00715 0.89813 1.21575 0.97314 0.89732 0.96744 1.58620 1.07164 1.05757 1.67396 1.22363 0.94474 0.83968 1.01123 0.93230 0.98313 0.98258 0.94165 0.94193 0.87641 0.87552 0.90399 0.90099 0.87653 0.89254 0.94170 0.91049 0.83806 0.83412 0.90943 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.65 21.45 0.29 -58.54 16 2 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 3 Si 1.12 52.32 29.90 68.60 2.05 54.37 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.63 -37.96 9.11 25.60 0.23 -37.73 16 8 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 9 C 0.01 0.61 4.28 29.85 0.13 0.74 16 10 C -0.08 -3.52 4.44 30.59 0.14 -3.38 16 11 C -0.12 -4.25 4.89 29.85 0.15 -4.11 16 12 C 0.53 18.34 7.85 87.66 0.69 19.02 16 13 O -0.59 -25.81 16.24 -3.05 -0.05 -25.86 16 14 N -0.62 -15.83 3.32 -811.36 -2.70 -18.52 16 15 C 0.09 1.49 6.48 86.73 0.56 2.05 16 16 C -0.12 -1.24 5.62 31.78 0.18 -1.07 16 17 C -0.09 -1.26 3.31 -9.33 -0.03 -1.29 16 18 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 19 C 0.08 0.84 6.29 86.30 0.54 1.39 16 20 N -0.86 -7.80 9.62 -186.71 -1.80 -9.60 16 21 C 0.10 2.20 6.38 86.93 0.55 2.76 16 22 H 0.26 16.22 7.22 -92.71 -0.67 15.55 16 23 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 24 H 0.00 -0.05 8.01 -2.39 -0.02 -0.07 16 25 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 26 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 27 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.11 0.77 8.12 -2.38 -0.02 0.75 16 32 H 0.09 0.73 8.02 -2.39 -0.02 0.71 16 33 H 0.04 0.38 8.11 -2.39 -0.02 0.36 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.35 2.25 8.21 -89.70 -0.74 1.51 16 36 H 0.35 2.19 9.08 -89.69 -0.81 1.38 16 37 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 38 H 0.06 1.49 8.03 -2.39 -0.02 1.47 16 Total: -1.00 -76.48 311.82 0.99 -75.50 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -0.41 Total: 6.00 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.60 Total: -23.34 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -4.20 Total: -86.66 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.37 kcal Total: -76.48 0.99 -75.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349824885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.951 kcal (2) G-P(sol) polarization free energy of solvation -76.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds