Wall clock time and date at job start Sun Mar 29 2020 22:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.47028 * 125.64673 * 359.69021 * 14 12 11 16 16 C 1.54332 * 107.26626 * 178.85119 * 15 14 12 17 17 C 1.55158 * 103.01848 * 338.14126 * 16 15 14 18 18 H 1.09004 * 111.00420 * 277.23342 * 17 16 15 19 19 C 1.53008 * 111.00580 * 153.38245 * 17 16 15 20 20 N 1.46904 * 109.46640 * 72.80243 * 19 17 16 21 21 C 1.47421 * 125.64900 * 179.97438 * 14 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.08999 * 109.88191 * 298.39487 * 15 14 12 30 30 H 1.08998 * 109.88273 * 59.55883 * 15 14 12 31 31 H 1.09000 * 110.85412 * 219.67782 * 16 15 14 32 32 H 1.09003 * 110.67269 * 96.52050 * 16 15 14 33 33 H 1.08997 * 109.47056 * 192.79844 * 19 17 16 34 34 H 1.08996 * 109.46922 * 312.80384 * 19 17 16 35 35 H 1.00893 * 111.00134 * 56.04847 * 20 19 17 36 36 H 1.00902 * 110.99308 * 179.97438 * 20 19 17 37 37 H 1.08993 * 110.36896 * 322.92998 * 21 14 12 38 38 H 1.08999 * 110.36601 * 85.14791 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6517 -5.9110 -0.0199 14 7 2.0100 -7.4032 -0.0270 15 6 0.5980 -7.8128 -0.0230 16 6 0.5683 -9.3553 -0.0617 17 6 1.9585 -9.7170 -0.6481 18 1 1.9524 -9.6528 -1.7362 19 6 2.4045 -11.1056 -0.1855 20 7 1.6140 -12.1305 -0.8804 21 6 2.8530 -8.6126 -0.0323 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 0.8531 -5.0490 0.8724 28 1 0.8537 -5.0406 -0.9075 29 1 0.1103 -7.4533 0.8832 30 1 0.0932 -7.4120 -0.9020 31 1 -0.2296 -9.7119 -0.7132 32 1 0.4555 -9.7634 0.9427 33 1 3.4609 -11.2435 -0.4159 34 1 2.2523 -11.1966 0.8900 35 1 1.6872 -12.0267 -1.8813 36 1 1.8902 -13.0572 -0.5921 37 1 3.7388 -8.4549 -0.6475 38 1 3.1408 -8.8788 0.9848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349824890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:25 Heat of formation + Delta-G solvation = -59.030522 kcal Electronic energy + Delta-G solvation = -16871.701173 eV Core-core repulsion = 14133.920159 eV Total energy + Delta-G solvation = -2737.781014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00138 -37.82827 -34.89926 -34.15785 -32.06495 -31.11744 -29.43371 -27.81576 -25.06214 -23.50950 -22.78749 -20.69139 -20.19607 -18.90970 -17.00586 -16.42636 -16.12835 -16.01406 -15.20752 -14.90212 -14.64496 -14.33967 -13.92622 -13.54015 -13.08272 -12.78630 -12.56225 -12.18694 -11.98376 -11.79328 -11.36067 -11.30944 -11.24427 -10.92506 -10.75169 -10.57160 -10.51608 -9.65036 -9.62918 -9.23630 -9.11190 -8.99500 -8.57958 -8.29001 -5.94927 -3.96244 2.94351 3.07934 3.38563 3.41711 3.45779 3.97238 4.38718 4.41636 4.51524 4.62295 4.99482 5.04312 5.09631 5.16489 5.32795 5.36560 5.40966 5.55236 5.67427 5.68542 5.74562 5.79443 5.88968 6.01599 6.25309 6.38340 6.66371 6.76753 6.97465 6.97795 7.19543 7.62655 7.74263 7.87299 8.05995 8.44934 8.50158 9.10620 9.67411 11.16616 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.070313 B = 0.003581 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.126460 B = 7816.139699 C = 8123.133408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.133 4.133 12 C 0.528 3.472 13 O -0.539 6.539 14 N -0.628 5.628 15 C 0.097 3.903 16 C -0.114 4.114 17 C -0.101 4.101 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.850 5.850 21 C 0.110 3.890 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.341 0.659 36 H 0.342 0.658 37 H 0.075 0.925 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -23.743 -1.001 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.172 4.172 12 C 0.319 3.681 13 O -0.415 6.415 14 N -0.364 5.364 15 C -0.026 4.026 16 C -0.152 4.152 17 C -0.121 4.121 18 H 0.101 0.899 19 C -0.059 4.059 20 N -0.379 5.379 21 C -0.013 4.013 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.266 -23.054 -0.626 23.064 hybrid contribution 1.241 0.560 -0.393 1.417 sum 1.506 -22.494 -1.019 22.568 Atomic orbital electron populations 1.69957 1.06033 1.26625 1.51169 1.25021 0.94861 0.99228 0.95400 0.86648 0.79565 0.83059 0.78677 1.20243 1.21332 1.20228 1.21247 0.93164 0.91042 1.50216 0.92630 1.19120 0.93948 0.91408 0.97109 1.21461 0.98660 0.91558 1.01665 1.21823 0.98027 0.93767 1.03618 1.21010 0.90128 0.82299 0.74677 1.90674 1.17377 1.83917 1.49504 1.48625 1.07372 1.05281 1.75127 1.22096 0.82831 0.95464 1.02202 1.22579 0.97195 0.93343 1.02041 1.22367 0.95692 0.93388 1.00638 0.89869 1.21699 0.94486 0.90504 0.99209 1.58681 1.61523 1.06488 1.11218 1.22106 0.94411 0.84093 1.00704 0.93023 0.96610 0.96614 0.92736 0.92711 0.89456 0.89457 0.91151 0.91207 0.89738 0.90598 0.95161 0.90572 0.84706 0.84545 0.90663 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.14 4.44 -26.74 -0.12 -2.26 16 11 C -0.13 -2.35 4.89 -27.88 -0.14 -2.49 16 12 C 0.53 9.29 7.85 -10.98 -0.09 9.21 16 13 O -0.54 -11.51 16.24 5.56 0.09 -11.42 16 14 N -0.63 -8.49 3.33 -170.53 -0.57 -9.05 16 15 C 0.10 0.99 6.49 -3.06 -0.02 0.97 16 16 C -0.11 -0.91 6.37 -24.89 -0.16 -1.07 16 17 C -0.10 -0.82 3.20 -88.48 -0.28 -1.11 16 18 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 19 C 0.07 0.47 6.24 -3.82 -0.02 0.45 16 20 N -0.85 -4.88 9.57 -10.36 -0.10 -4.98 16 21 C 0.11 1.23 6.37 -2.54 -0.02 1.22 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 26 H 0.05 1.28 8.10 -51.93 -0.42 0.85 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.51 7.97 -51.93 -0.41 0.09 16 35 H 0.34 1.68 8.99 -39.30 -0.35 1.33 16 36 H 0.34 1.46 9.08 -39.29 -0.36 1.10 16 37 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 38 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -33.92 314.22 -8.07 -42.00 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.56 Total: -3.14 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.39 Total: -8.72 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.07 Total: -40.74 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.92 -8.07 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349824890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.035 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds