Wall clock time and date at job start Sun Mar 29 2020 22:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.47028 * 125.64673 * 359.69021 * 14 12 11 16 16 C 1.54332 * 107.26626 * 178.85119 * 15 14 12 17 17 C 1.55158 * 103.01848 * 338.14126 * 16 15 14 18 18 H 1.09004 * 111.00420 * 277.23342 * 17 16 15 19 19 C 1.53008 * 111.00580 * 153.38245 * 17 16 15 20 20 N 1.46904 * 109.46640 * 72.80243 * 19 17 16 21 21 C 1.47421 * 125.64900 * 179.97438 * 14 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.08999 * 109.88191 * 298.39487 * 15 14 12 30 30 H 1.08998 * 109.88273 * 59.55883 * 15 14 12 31 31 H 1.09000 * 110.85412 * 219.67782 * 16 15 14 32 32 H 1.09003 * 110.67269 * 96.52050 * 16 15 14 33 33 H 1.08997 * 109.47056 * 192.79844 * 19 17 16 34 34 H 1.08996 * 109.46922 * 312.80384 * 19 17 16 35 35 H 1.00893 * 111.00134 * 56.04847 * 20 19 17 36 36 H 1.00902 * 110.99308 * 179.97438 * 20 19 17 37 37 H 1.08993 * 110.36896 * 322.92998 * 21 14 12 38 38 H 1.08999 * 110.36601 * 85.14791 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6517 -5.9110 -0.0199 14 7 2.0100 -7.4032 -0.0270 15 6 0.5980 -7.8128 -0.0230 16 6 0.5683 -9.3553 -0.0617 17 6 1.9585 -9.7170 -0.6481 18 1 1.9524 -9.6528 -1.7362 19 6 2.4045 -11.1056 -0.1855 20 7 1.6140 -12.1305 -0.8804 21 6 2.8530 -8.6126 -0.0323 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 0.8531 -5.0490 0.8724 28 1 0.8537 -5.0406 -0.9075 29 1 0.1103 -7.4533 0.8832 30 1 0.0932 -7.4120 -0.9020 31 1 -0.2296 -9.7119 -0.7132 32 1 0.4555 -9.7634 0.9427 33 1 3.4609 -11.2435 -0.4159 34 1 2.2523 -11.1966 0.8900 35 1 1.6872 -12.0267 -1.8813 36 1 1.8902 -13.0572 -0.5921 37 1 3.7388 -8.4549 -0.6475 38 1 3.1408 -8.8788 0.9848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349824890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:25 Heat of formation + Delta-G solvation = -83.076827 kcal Electronic energy + Delta-G solvation = -16872.743899 eV Core-core repulsion = 14133.920159 eV Total energy + Delta-G solvation = -2738.823740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15044 -38.91830 -36.14460 -35.61852 -34.04755 -32.09527 -30.36256 -29.50355 -26.43214 -24.86738 -23.80851 -22.09192 -21.33687 -20.15663 -18.55385 -17.98719 -17.41908 -16.79412 -16.53864 -16.33448 -15.85949 -15.41995 -15.06027 -14.56841 -14.39863 -13.94542 -13.76468 -13.73302 -13.65387 -13.09266 -12.68878 -12.62432 -12.51943 -12.45361 -12.03766 -11.94831 -11.63302 -11.54441 -11.47657 -11.29012 -10.81001 -10.54839 -9.69219 -9.55205 -8.20779 -6.31076 1.39093 1.42294 1.50421 1.57901 1.96350 2.41406 3.11967 3.31144 3.66054 3.69017 3.84426 4.11560 4.19170 4.20193 4.31052 4.38411 4.47483 4.56131 4.68043 4.74339 4.79979 4.92223 4.94284 5.04954 5.06688 5.15637 5.17700 5.32560 5.41965 5.52293 5.73275 5.84915 6.24288 6.26119 6.44871 6.62916 6.83752 7.12447 7.37449 8.90711 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.070313 B = 0.003581 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.126460 B = 7816.139699 C = 8123.133408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.123 4.123 12 C 0.526 3.474 13 O -0.587 6.587 14 N -0.622 5.622 15 C 0.087 3.913 16 C -0.104 4.104 17 C -0.090 4.090 18 H 0.084 0.916 19 C 0.077 3.923 20 N -0.853 5.853 21 C 0.104 3.896 22 H 0.265 0.735 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.346 0.654 36 H 0.352 0.648 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -24.867 -1.029 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.163 4.163 12 C 0.317 3.683 13 O -0.468 6.468 14 N -0.356 5.356 15 C -0.034 4.034 16 C -0.141 4.141 17 C -0.109 4.109 18 H 0.102 0.898 19 C -0.054 4.054 20 N -0.384 5.384 21 C -0.019 4.019 22 H 0.074 0.926 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.078 0.922 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.263 -24.239 -0.656 24.250 hybrid contribution 1.345 0.842 -0.386 1.633 sum 1.083 -23.398 -1.042 23.446 Atomic orbital electron populations 1.70062 1.07513 1.27913 1.51422 1.25918 0.95850 1.03093 0.94597 0.85540 0.78390 0.78296 0.79068 1.19429 1.20232 1.19411 1.21667 0.93352 0.92812 1.51000 0.93064 1.18996 0.94120 0.92272 0.95528 1.21172 0.97673 0.92917 1.00255 1.21636 0.97752 0.91544 1.05330 1.20808 0.89181 0.83592 0.74758 1.90651 1.19038 1.84874 1.52242 1.48609 1.09477 1.04643 1.72846 1.22407 0.80729 0.97263 1.03048 1.22560 0.97299 0.91424 1.02849 1.22287 0.94971 0.93199 1.00458 0.89809 1.21604 0.94732 0.89696 0.99354 1.58660 1.61298 1.06847 1.11624 1.22298 0.94368 0.84068 1.01172 0.92592 0.98050 0.98060 0.94143 0.94112 0.87707 0.87725 0.90279 0.90421 0.88349 0.89807 0.94902 0.90373 0.84147 0.83473 0.92210 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -33.01 9.11 25.60 0.23 -32.78 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.08 -3.77 4.44 30.59 0.14 -3.64 16 11 C -0.12 -4.32 4.89 29.85 0.15 -4.17 16 12 C 0.53 18.46 7.85 87.66 0.69 19.15 16 13 O -0.59 -25.71 16.24 -3.02 -0.05 -25.76 16 14 N -0.62 -16.15 3.33 -811.83 -2.70 -18.85 16 15 C 0.09 1.58 6.49 86.73 0.56 2.15 16 16 C -0.10 -1.36 6.37 31.79 0.20 -1.16 16 17 C -0.09 -1.27 3.20 -9.40 -0.03 -1.30 16 18 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 19 C 0.08 0.84 6.24 86.31 0.54 1.38 16 20 N -0.85 -7.64 9.57 -186.70 -1.79 -9.42 16 21 C 0.10 2.22 6.37 86.85 0.55 2.77 16 22 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 23 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.04 1.94 8.10 -2.38 -0.02 1.92 16 26 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 27 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.02 7.91 -2.39 -0.02 1.00 16 33 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.08 0.84 7.97 -2.39 -0.02 0.82 16 35 H 0.35 2.58 8.99 -89.70 -0.81 1.77 16 36 H 0.35 2.15 9.08 -89.69 -0.81 1.34 16 37 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 38 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -73.40 314.22 0.83 -72.57 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -0.58 Total: 5.75 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 3.64 Total: -15.27 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -4.20 Total: -85.01 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.40 0.83 -72.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349824890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.511 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds