Wall clock time and date at job start Sun Mar 29 2020 22:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48504 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47164 * 299.99558 * 3 2 1 6 6 H 1.48495 * 109.47416 * 59.99841 * 3 2 1 7 7 C 1.37877 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99963 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00293 * 169.99898 * 10 9 7 12 12 C 1.53056 * 109.38342 * 183.17592 * 11 10 9 13 13 N 1.46963 * 109.35944 * 301.62902 * 12 11 10 14 14 C 1.46903 * 110.99595 * 183.16796 * 13 12 11 15 15 H 1.08995 * 110.43366 * 185.08866 * 14 13 12 16 16 C 1.54810 * 110.48817 * 62.39947 * 14 13 12 17 17 C 1.54998 * 102.09310 * 220.44528 * 16 14 13 18 18 O 1.44376 * 103.49073 * 37.02056 * 17 16 14 19 19 C 1.43742 * 106.98065 * 319.94352 * 18 17 16 20 20 C 1.46956 * 110.89784 * 59.28921 * 13 12 11 21 21 C 1.46962 * 110.99604 * 293.79709 * 10 9 7 22 22 H 0.97008 * 119.99961 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47474 * 59.99889 * 9 7 2 24 24 H 1.09001 * 109.47284 * 299.99683 * 9 7 2 25 25 H 1.09002 * 109.48806 * 303.15319 * 11 10 9 26 26 H 1.09002 * 109.49141 * 63.19591 * 11 10 9 27 27 H 1.08992 * 109.49038 * 61.57437 * 12 11 10 28 28 H 1.08994 * 109.48641 * 181.64718 * 12 11 10 29 29 H 1.08999 * 110.90843 * 338.64124 * 16 14 13 30 30 H 1.08997 * 110.90768 * 102.24508 * 16 14 13 31 31 H 1.09005 * 110.61450 * 278.52291 * 17 16 14 32 32 H 1.08998 * 110.75131 * 155.58787 * 17 16 14 33 33 H 1.09000 * 109.88146 * 267.09115 * 19 18 17 34 34 H 1.09000 * 110.01036 * 146.00166 * 19 18 17 35 35 H 1.09002 * 109.48806 * 180.71933 * 20 13 12 36 36 H 1.09002 * 109.50952 * 60.66527 * 20 13 12 37 37 H 1.09001 * 109.48625 * 296.77747 * 21 10 9 38 38 H 1.09003 * 109.48941 * 56.82355 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5206 -4.8939 0.2401 12 6 2.5557 -6.0190 0.3128 13 7 3.3200 -6.0597 -0.9419 14 6 4.2746 -7.1763 -0.9407 15 1 4.8978 -7.1450 -1.8344 16 6 3.5268 -8.5284 -0.8450 17 6 4.4268 -9.3289 0.1304 18 8 4.8680 -8.3319 1.0768 19 6 5.1485 -7.1374 0.3280 20 6 4.0049 -4.7815 -1.1802 21 6 2.9695 -3.6568 -1.2530 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9724 -4.8428 1.1808 26 1 0.8253 -5.0916 -0.5758 27 1 3.2343 -5.8356 1.1458 28 1 2.0474 -6.9718 0.4603 29 1 2.5282 -8.3921 -0.4299 30 1 3.4785 -9.0159 -1.8187 31 1 5.2774 -9.7596 -0.3980 32 1 3.8540 -10.1083 0.6330 33 1 6.2025 -7.1123 0.0513 34 1 4.9004 -6.2578 0.9221 35 1 4.5531 -4.8326 -2.1209 36 1 4.7001 -4.5834 -0.3643 37 1 2.2909 -3.8406 -2.0860 38 1 3.4772 -2.7036 -1.4010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473728723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:41 Heat of formation + Delta-G solvation = -26.795182 kcal Electronic energy + Delta-G solvation = -17980.777213 eV Core-core repulsion = 15244.394028 eV Total energy + Delta-G solvation = -2736.383184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17885 -37.91836 -34.94878 -32.56472 -31.14567 -30.40249 -28.96073 -27.01874 -24.83540 -23.34968 -22.61275 -21.70770 -20.48219 -18.90415 -16.78435 -16.49053 -16.21444 -15.50099 -15.09400 -14.62740 -14.36915 -14.18918 -13.89306 -13.47317 -13.25545 -12.58130 -12.18552 -12.04352 -11.80268 -11.57396 -11.49190 -11.23159 -11.02906 -10.81565 -10.72074 -10.60845 -10.32936 -10.23289 -9.78969 -9.68966 -9.15693 -8.43935 -8.13023 -7.22309 -6.02350 -4.03760 3.31049 3.38460 3.43047 3.74013 4.06814 4.42677 4.49026 4.76658 4.92238 4.94693 5.03077 5.08021 5.33142 5.35387 5.49236 5.52432 5.56969 5.58604 5.73759 5.81431 5.82492 5.91059 5.98820 6.08951 6.24606 6.45144 6.59531 6.67509 6.71346 7.17491 7.20657 7.35514 7.37720 7.80620 8.09655 8.21310 8.55711 9.04042 9.60578 11.08608 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052228 B = 0.005008 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.983011 B = 5589.862785 C = 5766.425359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.055 3.945 13 N -0.527 5.527 14 C 0.052 3.948 15 H 0.093 0.907 16 C -0.149 4.149 17 C 0.044 3.956 18 O -0.377 6.377 19 C 0.011 3.989 20 C 0.055 3.945 21 C 0.068 3.932 22 H 0.260 0.740 23 H -0.008 1.008 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 -16.008 -2.427 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.073 4.073 13 N -0.251 5.251 14 C -0.057 4.057 15 H 0.111 0.889 16 C -0.187 4.187 17 C -0.032 4.032 18 O -0.295 6.295 19 C -0.067 4.067 20 C -0.073 4.073 21 C -0.061 4.061 22 H 0.070 0.930 23 H 0.009 0.991 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.809 -15.888 -2.202 17.840 hybrid contribution 0.355 0.997 -0.271 1.093 sum 8.164 -14.890 -2.472 17.161 Atomic orbital electron populations 1.69973 1.06074 1.26646 1.51118 1.24990 0.94853 0.99311 0.95462 0.86452 0.80055 0.83469 0.77500 1.19684 1.21116 1.21023 1.21191 0.93472 0.89952 1.49906 0.91884 1.19706 0.90059 0.87300 0.96130 1.62287 1.28150 1.02778 1.33176 1.22074 0.94762 0.89946 1.00473 1.22274 0.96200 0.98629 0.90210 1.62368 1.24583 1.02977 1.35200 1.23133 0.92944 0.92173 0.97490 0.88883 1.23234 1.00508 0.94495 1.00446 1.23570 0.96810 0.92077 0.90787 1.88875 1.87318 1.21913 1.31405 1.23960 0.99002 0.89324 0.94417 1.22289 0.96335 0.88560 1.00104 1.21986 0.95424 0.97330 0.91368 0.92986 0.99058 0.95213 0.90989 0.95213 0.93607 0.90893 0.89460 0.89985 0.92408 0.89038 0.92560 0.89000 0.91100 0.94144 0.95294 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.26 8.47 -34.44 -0.29 -14.55 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 10 N -0.54 -11.80 4.70 -235.90 -1.11 -12.91 16 11 C 0.06 1.05 5.61 -3.76 -0.02 1.03 16 12 C 0.05 0.85 4.91 -3.76 -0.02 0.83 16 13 N -0.53 -7.70 4.72 -224.65 -1.06 -8.76 16 14 C 0.05 0.61 3.12 -66.18 -0.21 0.41 16 15 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 16 C -0.15 -1.50 6.61 -24.72 -0.16 -1.66 16 17 C 0.04 0.43 7.72 38.21 0.29 0.72 16 18 O -0.38 -4.94 11.52 -35.23 -0.41 -5.34 16 19 C 0.01 0.14 6.36 37.74 0.24 0.38 16 20 C 0.05 0.86 5.37 -3.77 -0.02 0.84 16 21 C 0.07 1.33 5.43 -3.76 -0.02 1.31 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 24 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 25 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.75 6.12 -51.93 -0.32 0.44 16 28 H 0.07 1.02 6.06 -51.93 -0.31 0.71 16 29 H 0.09 0.96 5.98 -51.93 -0.31 0.65 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.29 5.18 -51.93 -0.27 1.02 16 35 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.04 0.64 7.13 -51.93 -0.37 0.27 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.82 6.79 -51.93 -0.35 1.46 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -30.36 290.81 -8.88 -39.24 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.08 Total: -2.97 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.33 Total: -4.16 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.43 Total: -47.77 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.41 Total: -5.34 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.36 -8.88 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473728723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.444 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds