Wall clock time and date at job start Sun Mar 29 2020 22:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99414 * 2 1 4 4 C 1.53003 * 109.46857 * 269.99263 * 3 2 1 5 5 N 1.46497 * 109.46709 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99961 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00183 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00073 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00039 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47377 * 90.00020 * 10 8 6 12 12 H 1.48508 * 109.47249 * 210.00351 * 10 8 6 13 13 H 1.48503 * 109.47224 * 329.99731 * 10 8 6 14 14 C 1.34773 * 120.00349 * 179.97438 * 2 1 3 15 15 O 1.21277 * 120.00147 * 185.38106 * 14 2 1 16 16 C 1.50696 * 119.99902 * 5.38504 * 14 2 1 17 17 C 1.53006 * 112.84974 * 294.10245 * 16 14 2 18 18 C 1.53780 * 113.61825 * 65.29640 * 16 14 2 19 19 C 1.53781 * 87.07894 * 89.19971 * 18 16 14 20 20 C 1.53774 * 87.17388 * 25.39656 * 19 18 16 21 21 H 1.08993 * 109.47427 * 264.99620 * 1 2 3 22 22 H 1.09000 * 109.47667 * 25.00330 * 1 2 3 23 23 H 1.09000 * 109.46905 * 144.99616 * 1 2 3 24 24 H 1.08999 * 109.47580 * 29.99978 * 3 2 1 25 25 H 1.08999 * 109.46771 * 150.00068 * 3 2 1 26 26 H 1.08998 * 109.47348 * 300.00222 * 4 3 2 27 27 H 1.08999 * 109.46773 * 60.00806 * 4 3 2 28 28 H 0.97003 * 120.00592 * 0.02562 * 5 4 3 29 29 H 0.97008 * 120.00353 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47350 * 186.27751 * 17 16 14 31 31 H 1.09000 * 109.47218 * 306.27630 * 17 16 14 32 32 H 1.09001 * 109.47314 * 66.27689 * 17 16 14 33 33 H 1.09006 * 113.61385 * 334.65572 * 18 16 14 34 34 H 1.08995 * 113.62075 * 203.75042 * 18 16 14 35 35 H 1.09000 * 113.61157 * 139.98542 * 19 18 16 36 36 H 1.09003 * 113.61627 * 270.79683 * 19 18 16 37 37 H 1.08993 * 113.62038 * 89.15515 * 20 19 18 38 38 H 1.09004 * 113.61531 * 220.06673 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1854 2.9789 -1.4425 6 6 3.5275 3.5720 -2.6284 7 1 3.2565 3.1049 -3.5637 8 6 4.2223 4.7737 -2.6284 9 7 4.5507 5.3440 -3.7683 10 14 4.6915 5.5813 -1.0108 11 1 6.0278 5.0944 -0.5837 12 1 4.7348 7.0552 -1.1875 13 1 3.6847 5.2365 0.0250 14 6 2.1389 -1.1671 0.0005 15 8 3.3477 -1.1694 0.0990 16 6 1.3905 -2.4694 -0.1214 17 6 0.4932 -2.7542 1.0848 18 6 0.6797 -2.6473 -1.4734 19 6 1.9809 -3.2883 -1.9840 20 6 2.2827 -3.6584 -0.5223 21 1 -0.3634 -0.0896 1.0237 22 1 -0.3634 0.9313 -0.4343 23 1 -0.3633 -0.8418 -0.5895 24 1 1.6083 2.0285 0.5138 25 1 3.1498 1.1386 0.5138 26 1 3.0417 0.9508 -1.9563 27 1 1.5001 1.8407 -1.9564 28 1 3.4284 3.3987 -0.6025 29 1 5.0366 6.1836 -3.7683 30 1 0.0670 -3.7531 0.9928 31 1 1.0836 -2.6939 1.9991 32 1 -0.3101 -2.0184 1.1219 33 1 0.4346 -1.7058 -1.9650 34 1 -0.1623 -3.3384 -1.4365 35 1 1.8184 -4.1521 -2.6285 36 1 2.6843 -2.5710 -2.4071 37 1 1.8797 -4.6264 -0.2248 38 1 3.3298 -3.5318 -0.2470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481266764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:37 Heat of formation + Delta-G solvation = 2.537295 kcal Electronic energy + Delta-G solvation = -17786.219458 eV Core-core repulsion = 15051.108225 eV Total energy + Delta-G solvation = -2735.111233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88620 -37.73285 -35.95975 -34.48721 -31.62697 -30.37101 -28.53521 -26.73128 -25.81040 -24.41795 -22.98187 -21.53955 -20.65705 -18.48686 -17.57017 -16.43131 -16.15120 -15.78442 -14.82731 -14.64373 -14.22625 -13.81790 -13.74666 -13.60577 -13.23763 -12.81442 -12.67151 -12.58681 -12.39366 -12.15805 -11.63079 -11.39402 -11.14970 -11.06967 -10.96620 -10.72634 -10.43928 -10.32709 -10.15657 -9.60315 -9.54345 -8.88294 -8.53842 -7.23157 -5.75060 -3.11267 2.69065 3.02714 3.39176 3.43154 3.47294 4.24410 4.36370 4.44142 4.61182 4.70569 4.83263 5.08610 5.25978 5.27409 5.35501 5.43275 5.48824 5.49618 5.53818 5.61214 5.61819 5.69405 5.77034 5.79350 5.84134 5.97111 6.00714 6.09820 6.26607 6.47587 6.64963 6.82200 7.47017 8.00018 8.27897 8.43272 9.21800 9.94045 10.13420 11.43295 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.005282 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.582140 B = 5300.012512 C = 5485.619120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.102 3.898 4 C 0.148 3.852 5 N -0.753 5.753 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.537 3.463 15 O -0.531 6.531 16 C -0.110 4.110 17 C -0.137 4.137 18 C -0.129 4.129 19 C -0.143 4.143 20 C -0.119 4.119 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.029 0.971 27 H 0.026 0.974 28 H 0.361 0.639 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 -17.653 9.579 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.020 4.020 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.107 0.893 8 C -0.191 4.191 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.324 3.676 15 O -0.407 6.407 16 C -0.113 4.113 17 C -0.194 4.194 18 C -0.166 4.166 19 C -0.180 4.180 20 C -0.156 4.156 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.193 0.807 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.537 -17.596 9.388 23.041 hybrid contribution 0.270 0.808 1.042 1.346 sum -11.267 -16.788 10.430 22.751 Atomic orbital electron populations 1.22070 0.79756 1.03840 1.01585 1.47668 1.06906 1.05997 1.73598 1.21745 0.97638 0.83589 0.99054 1.20881 0.95338 0.88581 0.93270 1.42562 1.68743 1.23183 1.05476 1.19033 1.29729 1.02930 0.85651 0.89254 1.24662 1.00420 0.97588 0.96415 1.69704 1.44861 1.19726 1.23928 0.86525 0.78630 0.78922 0.84317 1.20952 1.21664 1.20362 1.19949 0.87423 0.84481 0.75745 1.90704 1.14123 1.86986 1.48873 1.21948 0.98061 0.94139 0.97138 1.21820 0.98927 1.02209 0.96458 1.23077 0.97603 1.01702 0.94241 1.22851 0.97475 1.01017 0.96669 1.22893 1.00876 0.95927 0.95939 0.92646 0.90576 0.90457 0.90564 0.89738 0.95275 0.95589 0.80653 0.93031 0.91551 0.92244 0.91486 0.90584 0.89131 0.91144 0.89777 0.89598 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 8.79 59.85 0.53 1.21 16 2 N -0.61 -8.52 2.87 -181.57 -0.52 -9.04 16 3 C 0.10 1.72 5.54 -4.04 -0.02 1.69 16 4 C 0.15 3.06 6.58 -4.04 -0.03 3.03 16 5 N -0.75 -18.83 5.41 -59.91 -0.32 -19.15 16 6 C -0.24 -7.18 10.47 -15.06 -0.16 -7.33 16 7 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 8 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 9 N -0.93 -29.98 13.97 55.49 0.78 -29.21 16 10 Si 0.89 22.63 27.74 -169.99 -4.71 17.92 16 11 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 14 C 0.54 8.11 6.38 -10.99 -0.07 8.03 16 15 O -0.53 -10.31 15.50 5.56 0.09 -10.23 16 16 C -0.11 -1.19 0.71 -154.75 -0.11 -1.30 16 17 C -0.14 -1.13 8.78 37.16 0.33 -0.80 16 18 C -0.13 -1.20 5.95 -25.92 -0.15 -1.35 16 19 C -0.14 -1.52 7.80 -25.92 -0.20 -1.72 16 20 C -0.12 -1.27 7.11 -25.83 -0.18 -1.45 16 21 H 0.06 0.44 7.24 -51.93 -0.38 0.07 16 22 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 23 H 0.08 0.63 4.33 -51.93 -0.22 0.41 16 24 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 25 H 0.08 1.56 7.35 -51.93 -0.38 1.18 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.36 8.70 5.53 -40.82 -0.23 8.47 16 29 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 30 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.47 5.40 -51.93 -0.28 0.19 16 33 H 0.08 0.77 6.77 -51.93 -0.35 0.41 16 34 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.08 1.07 7.35 -51.93 -0.38 0.68 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -34.61 301.19 -6.35 -40.96 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.02 Total: 4.15 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.17 Total: 0.06 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.07 Total: -57.40 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.61 -6.35 -40.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481266764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.499 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds