Wall clock time and date at job start Sun Mar 29 2020 22:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99414 * 2 1 4 4 C 1.53003 * 109.46857 * 269.99263 * 3 2 1 5 5 N 1.46497 * 109.46709 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99961 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00183 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00073 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00039 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47377 * 90.00020 * 10 8 6 12 12 H 1.48508 * 109.47249 * 210.00351 * 10 8 6 13 13 H 1.48503 * 109.47224 * 329.99731 * 10 8 6 14 14 C 1.34773 * 120.00349 * 179.97438 * 2 1 3 15 15 O 1.21277 * 120.00147 * 185.38106 * 14 2 1 16 16 C 1.50696 * 119.99902 * 5.38504 * 14 2 1 17 17 C 1.53006 * 112.84974 * 294.10245 * 16 14 2 18 18 C 1.53780 * 113.61825 * 65.29640 * 16 14 2 19 19 C 1.53781 * 87.07894 * 89.19971 * 18 16 14 20 20 C 1.53774 * 87.17388 * 25.39656 * 19 18 16 21 21 H 1.08993 * 109.47427 * 264.99620 * 1 2 3 22 22 H 1.09000 * 109.47667 * 25.00330 * 1 2 3 23 23 H 1.09000 * 109.46905 * 144.99616 * 1 2 3 24 24 H 1.08999 * 109.47580 * 29.99978 * 3 2 1 25 25 H 1.08999 * 109.46771 * 150.00068 * 3 2 1 26 26 H 1.08998 * 109.47348 * 300.00222 * 4 3 2 27 27 H 1.08999 * 109.46773 * 60.00806 * 4 3 2 28 28 H 0.97003 * 120.00592 * 0.02562 * 5 4 3 29 29 H 0.97008 * 120.00353 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47350 * 186.27751 * 17 16 14 31 31 H 1.09000 * 109.47218 * 306.27630 * 17 16 14 32 32 H 1.09001 * 109.47314 * 66.27689 * 17 16 14 33 33 H 1.09006 * 113.61385 * 334.65572 * 18 16 14 34 34 H 1.08995 * 113.62075 * 203.75042 * 18 16 14 35 35 H 1.09000 * 113.61157 * 139.98542 * 19 18 16 36 36 H 1.09003 * 113.61627 * 270.79683 * 19 18 16 37 37 H 1.08993 * 113.62038 * 89.15515 * 20 19 18 38 38 H 1.09004 * 113.61531 * 220.06673 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1854 2.9789 -1.4425 6 6 3.5275 3.5720 -2.6284 7 1 3.2565 3.1049 -3.5637 8 6 4.2223 4.7737 -2.6284 9 7 4.5507 5.3440 -3.7683 10 14 4.6915 5.5813 -1.0108 11 1 6.0278 5.0944 -0.5837 12 1 4.7348 7.0552 -1.1875 13 1 3.6847 5.2365 0.0250 14 6 2.1389 -1.1671 0.0005 15 8 3.3477 -1.1694 0.0990 16 6 1.3905 -2.4694 -0.1214 17 6 0.4932 -2.7542 1.0848 18 6 0.6797 -2.6473 -1.4734 19 6 1.9809 -3.2883 -1.9840 20 6 2.2827 -3.6584 -0.5223 21 1 -0.3634 -0.0896 1.0237 22 1 -0.3634 0.9313 -0.4343 23 1 -0.3633 -0.8418 -0.5895 24 1 1.6083 2.0285 0.5138 25 1 3.1498 1.1386 0.5138 26 1 3.0417 0.9508 -1.9563 27 1 1.5001 1.8407 -1.9564 28 1 3.4284 3.3987 -0.6025 29 1 5.0366 6.1836 -3.7683 30 1 0.0670 -3.7531 0.9928 31 1 1.0836 -2.6939 1.9991 32 1 -0.3101 -2.0184 1.1219 33 1 0.4346 -1.7058 -1.9650 34 1 -0.1623 -3.3384 -1.4365 35 1 1.8184 -4.1521 -2.6285 36 1 2.6843 -2.5710 -2.4071 37 1 1.8797 -4.6264 -0.2248 38 1 3.3298 -3.5318 -0.2470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481266764.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:37 Heat of formation + Delta-G solvation = -21.922314 kcal Electronic energy + Delta-G solvation = -17787.280106 eV Core-core repulsion = 15051.108225 eV Total energy + Delta-G solvation = -2736.171881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.90020 -38.79739 -37.43260 -36.20899 -33.70162 -31.41322 -29.94609 -27.74889 -26.65121 -25.90873 -24.26672 -23.23714 -21.79803 -19.89445 -19.35184 -17.59267 -17.23376 -16.92225 -16.46926 -15.96523 -15.65926 -15.19431 -15.15033 -14.78718 -14.55075 -14.26069 -13.77507 -13.51816 -13.33340 -13.19639 -13.08473 -12.95703 -12.80688 -12.38121 -12.17701 -12.12610 -11.86732 -11.84481 -11.23948 -11.15046 -11.06011 -10.68907 -9.72294 -9.41215 -8.08593 -5.44891 1.34641 1.40233 1.46621 1.54873 1.93445 2.44390 3.22385 3.38082 3.50246 3.58794 3.72652 3.89754 3.98539 4.12078 4.14625 4.32819 4.47202 4.52232 4.67448 4.74027 4.81728 4.81855 4.83489 4.93326 4.94732 5.01110 5.02565 5.16301 5.21141 5.32193 5.45466 5.49910 5.67394 6.14133 6.37814 6.99263 7.13555 7.72403 7.94005 9.12721 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.005282 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.582140 B = 5300.012512 C = 5485.619120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.607 5.607 3 C 0.114 3.886 4 C 0.152 3.848 5 N -0.755 5.755 6 C -0.245 4.245 7 H 0.052 0.948 8 C -0.060 4.060 9 N -0.981 5.981 10 Si 0.959 3.041 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.245 1.245 14 C 0.525 3.475 15 O -0.588 6.588 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.114 4.114 19 C -0.152 4.152 20 C -0.119 4.119 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.064 0.936 26 H -0.001 1.001 27 H 0.035 0.965 28 H 0.368 0.632 29 H 0.261 0.739 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.120 0.880 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.839 -18.715 11.857 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.339 5.339 3 C -0.010 4.010 4 C 0.025 3.975 5 N -0.401 5.401 6 C -0.376 4.376 7 H 0.070 0.930 8 C -0.251 4.251 9 N -0.631 5.631 10 Si 0.785 3.215 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.170 1.170 14 C 0.314 3.686 15 O -0.468 6.468 16 C -0.112 4.112 17 C -0.189 4.189 18 C -0.151 4.151 19 C -0.189 4.189 20 C -0.156 4.156 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.017 0.983 27 H 0.053 0.947 28 H 0.202 0.798 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.138 0.862 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.242 -18.692 11.690 26.246 hybrid contribution 1.089 1.067 0.219 1.540 sum -13.153 -17.625 11.908 25.009 Atomic orbital electron populations 1.22408 0.76664 1.05017 1.03801 1.47791 1.08728 1.04660 1.72746 1.21445 0.97952 0.85738 0.95836 1.20929 0.94373 0.86064 0.96180 1.42509 1.69096 1.24278 1.04233 1.18983 1.29482 1.03052 0.86044 0.92991 1.25558 1.00583 0.98330 1.00671 1.69888 1.46027 1.20369 1.26836 0.85360 0.78839 0.77426 0.79886 1.20765 1.21449 1.16966 1.20883 0.87120 0.86158 0.74389 1.90672 1.16799 1.87910 1.51428 1.21962 0.98337 0.91432 0.99518 1.21849 0.98463 1.04364 0.94218 1.23122 0.97714 1.01987 0.92278 1.22839 0.97815 1.01136 0.97127 1.22977 0.99261 0.97579 0.95801 0.89936 0.90135 0.88557 0.87761 0.91777 0.98322 0.94688 0.79805 0.93042 0.88779 0.93390 0.89830 0.91431 0.85201 0.88984 0.93767 0.86191 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 8.79 127.77 1.12 2.12 16 2 N -0.61 -16.24 2.87 -846.76 -2.43 -18.67 16 3 C 0.11 3.73 5.54 86.38 0.48 4.21 16 4 C 0.15 6.38 6.58 86.38 0.57 6.95 16 5 N -0.75 -37.75 5.41 -343.45 -1.86 -39.60 16 6 C -0.24 -14.79 10.47 84.03 0.88 -13.91 16 7 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 8 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 9 N -0.98 -64.53 13.97 21.65 0.30 -64.23 16 10 Si 0.96 46.52 27.74 68.60 1.90 48.42 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 14 C 0.53 15.80 6.38 87.66 0.56 16.36 16 15 O -0.59 -23.99 15.50 -3.02 -0.05 -24.03 16 16 C -0.11 -2.16 0.71 -52.34 -0.04 -2.20 16 17 C -0.13 -1.66 8.78 71.98 0.63 -1.03 16 18 C -0.11 -1.79 5.95 31.12 0.19 -1.61 16 19 C -0.15 -3.13 7.80 31.12 0.24 -2.88 16 20 C -0.12 -2.40 7.11 31.18 0.22 -2.18 16 21 H 0.08 0.94 7.24 -2.39 -0.02 0.92 16 22 H 0.08 1.26 8.03 -2.39 -0.02 1.24 16 23 H 0.10 1.19 4.33 -2.39 -0.01 1.18 16 24 H 0.10 2.84 8.07 -2.39 -0.02 2.82 16 25 H 0.06 2.38 7.35 -2.39 -0.02 2.36 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.37 17.22 5.53 -92.71 -0.51 16.71 16 29 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16 30 H 0.09 0.71 8.06 -2.39 -0.02 0.69 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.77 5.40 -2.39 -0.01 0.76 16 33 H 0.07 1.20 6.77 -2.38 -0.02 1.19 16 34 H 0.13 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.59 8.04 -2.39 -0.02 1.57 16 38 H 0.05 1.32 7.35 -2.39 -0.02 1.30 16 Total: -1.00 -79.62 301.19 3.66 -75.96 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.47 Total: 19.49 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.32 Total: 2.67 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -3.99 Total: -122.51 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -79.62 3.66 -75.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481266764.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.036 kcal (2) G-P(sol) polarization free energy of solvation -79.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds