Wall clock time and date at job start Sun Mar 29 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 H 1.09004 * 109.46675 * 304.99829 * 3 2 1 5 5 C 1.52999 * 109.47344 * 64.99899 * 3 2 1 6 6 C 1.53002 * 109.47137 * 185.00320 * 3 2 1 7 7 C 1.50700 * 109.47073 * 175.00092 * 6 3 2 8 8 O 1.20827 * 120.00021 * 359.97438 * 7 6 3 9 9 O 1.34228 * 120.00181 * 180.02562 * 7 6 3 10 10 C 1.45197 * 117.00166 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47120 * 29.99358 * 10 9 7 12 12 C 1.50696 * 109.46897 * 149.99817 * 10 9 7 13 13 H 1.08009 * 119.99851 * 114.73447 * 12 10 9 14 14 C 1.37875 * 120.00467 * 294.72555 * 12 10 9 15 15 N 1.31508 * 120.00711 * 184.83533 * 14 12 10 16 16 Si 1.86803 * 119.99447 * 4.84392 * 14 12 10 17 17 H 1.48500 * 109.47437 * 84.85214 * 16 14 12 18 18 H 1.48503 * 109.47155 * 204.84892 * 16 14 12 19 19 H 1.48500 * 109.47013 * 324.84873 * 16 14 12 20 20 C 1.53002 * 109.46796 * 269.99616 * 10 9 7 21 21 C 1.53005 * 117.49721 * 134.05024 * 20 10 9 22 22 C 1.53004 * 117.49940 * 65.39212 * 20 10 9 23 23 H 1.08999 * 109.47424 * 59.99912 * 1 2 3 24 24 H 1.09003 * 109.47314 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47321 * 300.00070 * 1 2 3 26 26 H 1.08997 * 109.46884 * 239.99745 * 2 1 3 27 27 H 1.08999 * 109.46899 * 120.00112 * 2 1 3 28 28 H 1.09000 * 109.46891 * 300.00625 * 5 3 2 29 29 H 1.09002 * 109.46626 * 59.99970 * 5 3 2 30 30 H 1.08989 * 109.47458 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47052 * 54.99946 * 6 3 2 32 32 H 1.09005 * 109.46880 * 294.99782 * 6 3 2 33 33 H 0.96992 * 120.00642 * 179.97438 * 15 14 12 34 34 H 1.09002 * 115.55327 * 279.71560 * 20 10 9 35 35 H 1.09003 * 117.49735 * 0.02562 * 21 20 10 36 36 H 1.08996 * 117.49918 * 145.01625 * 21 20 10 37 37 H 1.08997 * 117.49583 * 214.97864 * 22 20 10 38 38 H 1.09002 * 117.49836 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 8 3.2690 3.7792 -0.2383 9 8 5.3707 3.1097 -0.3725 10 6 5.7726 4.5002 -0.4875 11 1 5.0634 5.1291 0.0507 12 6 7.1482 4.6758 0.1025 13 1 7.9758 4.9574 -0.5318 14 6 7.3502 4.4773 1.4518 15 7 8.5277 4.7223 1.9836 16 14 5.9511 3.8599 2.5246 17 1 5.8924 2.3776 2.4570 18 1 6.1810 4.2825 3.9296 19 1 4.6678 4.4288 2.0403 20 6 5.7951 4.9042 -1.9630 21 6 5.1437 6.2362 -2.3407 22 6 4.4611 4.9174 -2.7123 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5490 2.1252 1.3969 29 1 2.0699 1.5875 2.1491 30 1 1.9982 3.1543 1.3071 31 1 3.8570 0.8800 -1.0114 32 1 4.0030 0.9835 0.7596 33 1 8.6698 4.5829 2.9329 34 1 6.6821 4.6020 -2.5198 35 1 4.6996 6.8248 -1.5379 36 1 5.6020 6.8100 -3.1462 37 1 4.4707 4.6241 -3.7620 38 1 3.5676 4.6378 -2.1541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520418742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:10 Heat of formation + Delta-G solvation = -85.585341 kcal Electronic energy + Delta-G solvation = -18124.085708 eV Core-core repulsion = 15352.860440 eV Total energy + Delta-G solvation = -2771.225268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84371 -37.26768 -36.01105 -34.93054 -32.71947 -30.77150 -28.73325 -27.40496 -24.22761 -23.08962 -21.74399 -20.78993 -19.62486 -19.25149 -17.16090 -16.86787 -15.96032 -15.50920 -14.94701 -14.70131 -14.16797 -13.90126 -13.63694 -13.05897 -12.74205 -12.50867 -12.04341 -11.95034 -11.74910 -11.46248 -11.28594 -11.19871 -10.91672 -10.83406 -10.70025 -10.53988 -10.51113 -10.20833 -9.80002 -9.58070 -9.41374 -9.37658 -8.94529 -8.78778 -6.32252 -4.39155 3.00854 3.23926 3.29726 3.35939 3.63917 4.28943 4.54711 4.85067 4.90678 4.95066 5.16503 5.31375 5.43496 5.48762 5.57198 5.66794 5.68006 5.72268 5.79863 5.86006 5.94818 5.98469 6.06022 6.10653 6.17654 6.19159 6.34486 6.47166 6.51654 6.59700 6.64397 6.76249 7.01861 7.40478 7.72286 8.26732 8.69962 8.79916 9.28647 10.77099 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.022028 B = 0.008815 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.827066 B = 3175.474756 C = 4066.805327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.078 4.078 4 H 0.079 0.921 5 C -0.158 4.158 6 C -0.122 4.122 7 C 0.446 3.554 8 O -0.523 6.523 9 O -0.355 6.355 10 C 0.206 3.794 11 H 0.051 0.949 12 C -0.507 4.507 13 H 0.088 0.912 14 C 0.087 3.913 15 N -0.875 5.875 16 Si 0.875 3.125 17 H -0.269 1.269 18 H -0.290 1.290 19 H -0.259 1.259 20 C -0.139 4.139 21 C -0.170 4.170 22 C -0.201 4.201 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.270 0.730 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 -7.222 -4.057 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.097 4.097 4 H 0.097 0.903 5 C -0.215 4.215 6 C -0.160 4.160 7 C 0.290 3.710 8 O -0.414 6.414 9 O -0.272 6.272 10 C 0.155 3.845 11 H 0.069 0.931 12 C -0.543 4.543 13 H 0.106 0.894 14 C -0.120 4.120 15 N -0.511 5.511 16 Si 0.703 3.297 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.183 1.183 20 C -0.157 4.157 21 C -0.207 4.207 22 C -0.238 4.238 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.419 -6.907 -3.900 14.736 hybrid contribution -0.484 -0.298 0.604 0.829 sum -12.903 -7.205 -3.296 15.141 Atomic orbital electron populations 1.21799 0.95839 1.01215 1.02050 1.21585 0.95985 0.96157 1.02008 1.20966 0.92912 0.95951 0.99844 0.90310 1.22034 1.00914 1.02494 0.96042 1.21572 0.96590 0.92983 1.04892 1.23538 0.83035 0.91814 0.72592 1.90482 1.56776 1.47120 1.47048 1.86973 1.23014 1.37062 1.80150 1.20758 0.96520 0.76453 0.90814 0.93111 1.21001 0.93450 1.46373 0.93507 0.89374 1.25069 0.95808 0.92997 0.98084 1.69886 1.22519 1.45500 1.13234 0.86874 0.83412 0.80336 0.79126 1.19459 1.21640 1.18300 1.22623 0.95395 1.00340 0.97390 1.22794 1.04354 0.90704 1.02876 1.23175 0.98182 1.02277 1.00121 0.92766 0.93021 0.92443 0.91921 0.91924 0.92723 0.93418 0.90620 0.88340 0.88665 0.91980 0.88110 0.89076 0.89516 0.90117 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.28 5.40 -26.73 -0.14 -1.43 16 3 C -0.08 -1.07 2.04 -90.62 -0.18 -1.26 16 4 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 5 C -0.16 -2.31 8.69 37.16 0.32 -1.98 16 6 C -0.12 -1.93 5.29 -27.88 -0.15 -2.08 16 7 C 0.45 9.23 6.05 36.01 0.22 9.45 16 8 O -0.52 -11.46 10.91 -18.75 -0.20 -11.66 16 9 O -0.36 -8.41 8.18 -39.25 -0.32 -8.73 16 10 C 0.21 5.11 1.53 -27.88 -0.04 5.06 16 11 H 0.05 1.34 5.90 -51.93 -0.31 1.04 16 12 C -0.51 -14.30 9.35 -34.44 -0.32 -14.63 16 13 H 0.09 2.62 7.99 -52.48 -0.42 2.20 16 14 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 15 N -0.88 -26.06 13.96 55.43 0.77 -25.28 16 16 Si 0.88 22.13 25.56 -169.99 -4.34 17.79 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.26 -6.59 6.42 56.52 0.36 -6.23 16 20 C -0.14 -2.98 5.29 -90.61 -0.48 -3.46 16 21 C -0.17 -3.18 10.18 -26.69 -0.27 -3.45 16 22 C -0.20 -3.74 9.82 -26.69 -0.26 -4.00 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.35 5.96 -51.93 -0.31 1.04 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.10 2.13 8.14 -51.93 -0.42 1.71 16 35 H 0.09 1.74 8.08 -51.93 -0.42 1.32 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.10 2.07 5.58 -51.93 -0.29 1.78 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -30.07 302.35 -6.83 -36.90 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.24 Total: 2.88 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.05 Total: -16.46 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.77 Total: -25.28 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.53 Total: -20.39 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.34 Total: 17.79 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.07 -6.83 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.686 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds