Wall clock time and date at job start Sun Mar 29 2020 22:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99607 * 2 1 4 4 C 1.34774 * 120.00002 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00197 * 5.25929 * 4 2 1 6 6 C 1.50700 * 120.00135 * 185.26009 * 4 2 1 7 7 H 1.09002 * 110.88407 * 29.96202 * 6 4 2 8 8 C 1.55149 * 111.00563 * 153.88172 * 6 4 2 9 9 C 1.54335 * 103.02044 * 153.38261 * 8 6 4 10 10 N 1.47030 * 107.26558 * 338.14191 * 9 8 6 11 11 C 1.34777 * 125.64865 * 178.85123 * 10 9 8 12 12 O 1.21681 * 119.99662 * 179.69318 * 11 10 9 13 13 C 1.46377 * 119.99644 * 359.69081 * 11 10 9 14 14 H 1.07998 * 120.00618 * 359.97438 * 13 11 10 15 15 C 1.40050 * 119.99448 * 180.02562 * 13 11 10 16 16 N 1.30675 * 119.99919 * 359.72739 * 15 13 11 17 17 Si 1.86799 * 119.99922 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46706 * 60.00219 * 17 15 13 19 19 H 1.48497 * 109.47185 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47380 * 300.00244 * 17 15 13 21 21 C 1.47421 * 108.69814 * 358.58522 * 10 9 8 22 22 H 1.09005 * 109.47085 * 270.00054 * 1 2 3 23 23 H 1.09001 * 109.47059 * 29.99976 * 1 2 3 24 24 H 1.09003 * 109.47111 * 150.00213 * 1 2 3 25 25 H 1.09004 * 109.47184 * 244.09984 * 3 2 1 26 26 H 1.08994 * 109.47820 * 4.10704 * 3 2 1 27 27 H 1.09004 * 109.47146 * 124.11074 * 3 2 1 28 28 H 1.09005 * 110.72473 * 271.94024 * 8 6 4 29 29 H 1.08997 * 110.72138 * 35.21777 * 8 6 4 30 30 H 1.09010 * 109.99451 * 218.66791 * 9 8 6 31 31 H 1.09002 * 109.77947 * 97.49830 * 9 8 6 32 32 H 0.97005 * 119.99876 * 180.02562 * 16 15 13 33 33 H 1.09001 * 110.36478 * 143.19593 * 21 10 9 34 34 H 1.08999 * 110.36601 * 265.40391 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5363 -2.2154 -0.0953 6 6 3.6411 -1.1699 0.1202 7 1 3.9865 -0.3123 0.6976 8 6 4.1472 -2.4990 0.7402 9 6 5.5763 -2.6261 0.1714 10 7 5.6360 -1.8041 -1.0462 11 6 6.7221 -1.6324 -1.8255 12 8 6.6545 -0.9307 -2.8173 13 6 7.9830 -2.2900 -1.4787 14 1 8.0432 -2.9125 -0.5982 15 6 9.1118 -2.1111 -2.2882 16 7 9.0378 -1.3615 -3.3560 17 14 10.7211 -2.9497 -1.8454 18 1 10.5233 -4.4214 -1.8257 19 1 11.7540 -2.6030 -2.8544 20 1 11.1653 -2.4919 -0.5043 21 6 4.3093 -1.2041 -1.2769 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 2.7678 1.3590 -0.9245 26 1 1.4914 2.0959 0.0736 27 1 2.8782 1.2953 0.8509 28 1 4.1671 -2.4342 1.8282 29 1 3.5304 -3.3363 0.4139 30 1 5.7889 -3.6669 -0.0732 31 1 6.2979 -2.2599 0.9017 32 1 9.8196 -1.2378 -3.9169 33 1 4.4136 -0.1938 -1.6725 34 1 3.7281 -1.8209 -1.9623 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557013748.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:20 Heat of formation + Delta-G solvation = -66.329034 kcal Electronic energy + Delta-G solvation = -17435.991681 eV Core-core repulsion = 14562.061085 eV Total energy + Delta-G solvation = -2873.930595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11117 -37.94916 -35.67647 -35.39147 -32.51331 -30.87404 -28.91314 -27.92959 -26.62413 -25.69820 -22.89526 -21.29917 -19.20104 -18.90178 -17.28477 -16.76436 -15.90751 -15.67204 -15.46236 -14.68452 -14.24486 -13.59836 -13.25290 -13.09917 -12.94489 -12.81417 -12.73173 -12.61080 -12.09189 -11.87019 -11.42965 -11.16971 -11.07411 -10.89345 -10.78369 -10.39956 -10.35311 -10.19716 -9.69833 -8.86087 -8.73828 -7.67776 -7.23223 -6.21635 -4.66383 2.64474 2.97267 3.15505 3.20299 3.22299 4.07055 4.42574 4.52752 4.73287 4.91584 4.98295 5.10308 5.19655 5.20592 5.38938 5.52329 5.63213 5.68366 5.74588 5.77903 5.84494 6.12619 6.27140 6.35168 6.43650 6.54266 6.67962 7.27288 7.33348 7.42485 8.07698 8.19597 8.38560 9.00057 9.45774 10.55052 10.73805 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048229 B = 0.005475 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.429408 B = 5113.021134 C = 5432.966161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.626 5.626 3 C 0.078 3.922 4 C 0.530 3.470 5 O -0.538 6.538 6 C -0.128 4.128 7 H 0.100 0.900 8 C -0.116 4.116 9 C 0.121 3.879 10 N -0.644 5.644 11 C 0.571 3.429 12 O -0.576 6.576 13 C -0.538 4.538 14 H 0.070 0.930 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.910 3.090 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.136 3.864 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.269 0.731 33 H 0.068 0.932 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 3.506 9.266 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.361 5.361 3 C -0.065 4.065 4 C 0.318 3.682 5 O -0.414 6.414 6 C -0.150 4.150 7 H 0.118 0.882 8 C -0.154 4.154 9 C -0.003 4.003 10 N -0.385 5.385 11 C 0.378 3.622 12 O -0.459 6.459 13 C -0.574 4.574 14 H 0.088 0.912 15 C -0.133 4.133 16 N -0.397 5.397 17 Si 0.734 3.266 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.011 3.989 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.367 3.439 8.422 14.559 hybrid contribution 0.712 -0.252 0.338 0.827 sum -10.656 3.187 8.760 14.158 Atomic orbital electron populations 1.21642 0.79506 1.03139 1.01507 1.47777 1.06943 1.06684 1.74685 1.21855 0.97241 0.84750 1.02652 1.20514 0.89823 0.82879 0.74971 1.90656 1.70329 1.31295 1.49165 1.22577 0.90564 1.01206 1.00624 0.88220 1.22632 0.96829 0.96156 0.99794 1.21621 0.94585 0.95989 0.88123 1.48733 1.09468 1.52174 1.28105 1.18051 0.81468 0.81344 0.81317 1.90608 1.83846 1.43341 1.28093 1.20857 0.93348 1.31488 1.11726 0.91188 1.25735 0.99921 0.93798 0.93845 1.70014 1.29712 1.29177 1.10767 0.86403 0.81043 0.80269 0.78887 1.19207 1.20522 1.19221 1.21557 0.86061 0.99132 0.92133 0.92993 0.91378 0.90523 0.91538 0.90552 0.91613 0.90751 0.89652 0.92424 0.92557 0.91976 0.91321 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.43 59.85 0.62 1.46 16 2 N -0.63 -7.64 3.27 -189.51 -0.62 -8.26 16 3 C 0.08 0.73 9.74 59.84 0.58 1.31 16 4 C 0.53 8.20 6.84 -10.99 -0.08 8.12 16 5 O -0.54 -9.94 15.41 5.55 0.09 -9.86 16 6 C -0.13 -2.00 2.76 -89.63 -0.25 -2.24 16 7 H 0.10 1.37 6.55 -51.93 -0.34 1.03 16 8 C -0.12 -1.81 6.30 -24.89 -0.16 -1.96 16 9 C 0.12 2.29 6.05 -3.05 -0.02 2.27 16 10 N -0.64 -15.12 3.33 -172.17 -0.57 -15.69 16 11 C 0.57 16.60 7.78 -12.99 -0.10 16.50 16 12 O -0.58 -18.93 15.28 5.21 0.08 -18.85 16 13 C -0.54 -15.27 9.06 -35.63 -0.32 -15.59 16 14 H 0.07 1.82 7.16 -52.49 -0.38 1.45 16 15 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 16 N -0.77 -23.03 11.83 55.55 0.66 -22.38 16 17 Si 0.91 20.10 29.56 -169.99 -5.02 15.07 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.14 2.72 6.36 -2.53 -0.02 2.70 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.50 7.96 -51.93 -0.41 0.08 16 24 H 0.08 0.87 7.36 -51.93 -0.38 0.49 16 25 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.08 0.51 7.83 -51.93 -0.41 0.10 16 27 H 0.07 0.57 7.03 -51.93 -0.37 0.20 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.41 7.21 -51.93 -0.37 1.04 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 33 H 0.07 1.40 7.97 -51.93 -0.41 0.98 16 34 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -36.33 286.87 -5.63 -41.97 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.73 Total: -1.23 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 0.17 Total: 14.89 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.54 Total: -46.32 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: 0.17 Total: -28.71 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.33 -5.63 -41.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557013748.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.364 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds