Wall clock time and date at job start Sun Mar 29 2020 22:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99749 * 2 1 4 4 C 1.53001 * 109.47024 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47368 * 64.99841 * 4 3 2 6 6 C 1.36929 * 119.99877 * 270.00373 * 5 4 3 7 7 H 1.07999 * 120.00030 * 141.21239 * 6 5 4 8 8 C 1.38817 * 120.00238 * 321.20444 * 6 5 4 9 9 N 1.31622 * 119.99659 * 339.52830 * 8 6 5 10 10 Si 1.86798 * 120.00195 * 159.52873 * 8 6 5 11 11 H 1.48497 * 109.47244 * 90.00165 * 10 8 6 12 12 H 1.48501 * 109.46990 * 210.00066 * 10 8 6 13 13 H 1.48500 * 109.47073 * 329.99719 * 10 8 6 14 14 C 1.46499 * 119.99531 * 90.00161 * 5 4 3 15 15 C 1.50699 * 109.47064 * 264.62397 * 14 5 4 16 16 N 1.30708 * 125.53239 * 270.00756 * 15 14 5 17 17 N 1.40445 * 106.79828 * 179.97438 * 16 15 14 18 18 H 0.97002 * 126.82757 * 179.97438 * 17 16 15 19 19 C 1.34430 * 106.35273 * 359.97438 * 17 16 15 20 20 C 1.50696 * 125.96263 * 179.97438 * 19 17 16 21 21 N 1.30839 * 108.07556 * 359.97438 * 19 17 16 22 22 H 1.09001 * 109.47254 * 59.99642 * 1 2 3 23 23 H 1.08994 * 109.46974 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46741 * 299.99415 * 1 2 3 25 25 H 1.09000 * 109.47335 * 60.00295 * 3 2 1 26 26 H 1.08995 * 109.47289 * 300.00202 * 3 2 1 27 27 H 1.08998 * 109.47034 * 304.99819 * 4 3 2 28 28 H 1.09004 * 109.47212 * 185.00170 * 4 3 2 29 29 H 0.97001 * 119.99874 * 179.97438 * 9 8 6 30 30 H 1.09007 * 109.46831 * 144.63289 * 14 5 4 31 31 H 1.08994 * 109.47596 * 24.62960 * 14 5 4 32 32 H 1.08995 * 109.47453 * 269.99702 * 20 19 17 33 33 H 1.08999 * 109.46932 * 30.00738 * 20 19 17 34 34 H 1.09000 * 109.47100 * 149.99971 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3368 7 1 3.8030 -1.3103 -2.2404 8 6 4.5972 -1.5170 -0.2607 9 7 5.3171 -0.9106 0.6592 10 14 4.2488 -3.3467 -0.1183 11 1 5.3201 -4.1097 -0.8078 12 1 4.2100 -3.7331 1.3150 13 1 2.9394 -3.6519 -0.7489 14 6 4.2864 1.4008 -2.4147 15 6 3.0774 1.4853 -3.3104 16 7 2.8006 0.6677 -4.2919 17 7 1.5923 1.1067 -4.8573 18 1 1.1221 0.7081 -5.6063 19 6 1.2167 2.1892 -4.1543 20 6 -0.0239 3.0113 -4.3907 21 7 2.1163 2.4045 -3.2289 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8514 0.5683 0.8409 28 1 3.9785 2.1766 0.0890 29 1 5.6665 -1.4137 1.4114 30 1 5.1175 0.9616 -2.9667 31 1 4.5610 2.4009 -2.0796 32 1 0.1995 3.8119 -5.0959 33 1 -0.8088 2.3752 -4.7999 34 1 -0.3600 3.4416 -3.4473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559889063.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:37 Heat of formation + Delta-G solvation = 64.278307 kcal Electronic energy + Delta-G solvation = -18005.091571 eV Core-core repulsion = 15169.117286 eV Total energy + Delta-G solvation = -2835.974285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49876 -37.07983 -35.30504 -32.69340 -31.86832 -31.02893 -29.11743 -27.63222 -26.02386 -25.56565 -23.08902 -21.10116 -20.45775 -19.54306 -17.43634 -16.45212 -15.67966 -15.18344 -14.91421 -14.54374 -14.11331 -13.94448 -13.48586 -13.32256 -13.06581 -12.68929 -12.56633 -11.71487 -11.46755 -11.27490 -11.03387 -10.73241 -10.69354 -10.61034 -10.07542 -9.93001 -9.63788 -9.46471 -9.39838 -8.89908 -8.63264 -8.31864 -6.50066 -5.65218 -3.21980 2.13576 3.13328 3.48273 3.51906 3.55487 3.64713 4.44663 4.66626 4.81241 5.01985 5.32000 5.37791 5.53354 5.66329 5.69658 5.77348 5.83702 5.88076 6.13137 6.33150 6.48803 6.51919 6.67126 6.83477 6.84842 6.91592 7.14065 7.51328 7.74598 8.02148 8.20000 8.67885 8.75056 9.31611 9.92872 10.48121 11.37867 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.008901 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.579223 B = 3145.013017 C = 3422.016596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.039 3.961 4 C 0.146 3.854 5 N -0.559 5.559 6 C -0.240 4.240 7 H 0.058 0.942 8 C 0.021 3.979 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.225 3.775 15 C 0.235 3.765 16 N -0.310 5.310 17 N -0.497 5.497 18 H 0.430 0.570 19 C 0.258 3.742 20 C -0.071 4.071 21 N -0.535 5.535 22 H 0.023 0.977 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.020 0.980 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.044 0.956 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 7.462 -7.047 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C -0.040 4.040 4 C 0.020 3.980 5 N -0.278 5.278 6 C -0.370 4.370 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.729 3.271 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.093 3.907 15 C -0.051 4.051 16 N -0.138 5.138 17 N -0.215 5.215 18 H 0.273 0.727 19 C -0.021 4.021 20 C -0.130 4.130 21 N -0.265 5.265 22 H 0.042 0.958 23 H 0.089 0.911 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.484 6.886 -6.769 13.535 hybrid contribution -1.275 -0.974 -0.441 1.664 sum -10.759 5.912 -7.209 14.237 Atomic orbital electron populations 1.22560 0.84619 1.01050 0.98131 1.88193 1.16250 1.28122 1.94855 1.23503 0.98768 0.83960 0.97728 1.21072 0.87679 0.96656 0.92574 1.43607 1.74736 1.02923 1.06491 1.18855 1.35585 0.81281 1.01232 0.92456 1.25040 0.96238 0.97682 0.98861 1.69981 1.34124 1.35663 1.13769 0.86364 0.78216 0.85767 0.76706 1.21639 1.21698 1.20495 1.19308 0.87603 0.96093 0.87651 1.26359 0.98190 0.87429 0.93088 1.78108 0.97827 1.22902 1.14978 1.48068 1.20344 1.23827 1.29262 0.72685 1.24248 0.97713 0.89331 0.90759 1.20251 0.90341 0.98161 1.04266 1.70345 1.04208 1.29022 1.22960 0.95805 0.91068 0.95580 0.96190 0.93509 0.88075 0.93823 0.93759 0.90941 0.91517 0.89687 0.90618 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 101.05 1.11 1.74 16 2 O -0.36 -8.53 10.18 -35.23 -0.36 -8.89 16 3 C 0.04 0.87 6.28 37.16 0.23 1.10 16 4 C 0.15 3.57 5.76 -4.04 -0.02 3.55 16 5 N -0.56 -14.36 2.39 -174.61 -0.42 -14.78 16 6 C -0.24 -6.84 8.94 -15.06 -0.13 -6.98 16 7 H 0.06 1.72 7.91 -52.49 -0.42 1.30 16 8 C 0.02 0.61 4.97 -17.43 -0.09 0.52 16 9 N -0.89 -26.23 11.50 55.49 0.64 -25.59 16 10 Si 0.90 23.13 29.60 -169.99 -5.03 18.10 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 14 C 0.22 5.05 6.34 -5.19 -0.03 5.01 16 15 C 0.23 5.03 7.49 -156.85 -1.17 3.86 16 16 N -0.31 -6.49 12.80 32.42 0.41 -6.07 16 17 N -0.50 -7.85 7.45 32.62 0.24 -7.61 16 18 H 0.43 4.96 8.96 -182.33 -1.63 3.32 16 19 C 0.26 3.97 8.24 -155.69 -1.28 2.69 16 20 C -0.07 -0.66 10.51 36.00 0.38 -0.28 16 21 N -0.54 -10.31 9.96 -8.16 -0.08 -10.39 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 1.03 6.65 -51.93 -0.35 0.69 16 27 H 0.10 2.79 5.57 -51.93 -0.29 2.51 16 28 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.07 1.64 8.08 -51.92 -0.42 1.22 16 31 H 0.07 1.37 7.83 -51.93 -0.41 0.96 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -34.35 292.90 -7.20 -41.55 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.01 Total: -1.94 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -1.01 Total: 11.21 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.80 Total: -64.45 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.36 Total: -8.89 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.03 Total: 18.10 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.35 -7.20 -41.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559889063.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.831 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds