Wall clock time and date at job start Sun Mar 29 2020 22:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46803 * 240.00071 * 3 2 1 5 5 H 1.48498 * 109.47290 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47397 * 120.00305 * 3 2 1 7 7 C 1.37882 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50690 * 119.99896 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47929 * 300.00080 * 9 7 2 11 11 O 1.42902 * 109.47120 * 60.00298 * 9 7 2 12 12 C 1.53000 * 109.47299 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47816 * 177.62070 * 12 9 7 14 14 C 1.47556 * 111.00355 * 173.45195 * 13 12 9 15 15 C 1.55197 * 106.99131 * 121.58351 * 14 13 12 16 16 H 1.09005 * 112.33584 * 144.53423 * 15 14 13 17 17 C 1.53100 * 106.66513 * 268.28672 * 15 14 13 18 18 C 1.52674 * 110.69264 * 161.19021 * 17 15 14 19 19 N 1.47178 * 108.46307 * 298.53951 * 18 17 15 20 20 C 1.46660 * 109.78896 * 65.76922 * 19 18 17 21 21 C 1.50982 * 111.71795 * 299.22816 * 20 19 18 22 22 H 1.09003 * 109.20143 * 173.32711 * 21 20 19 23 23 C 1.48179 * 110.99945 * 294.29915 * 13 12 9 24 24 H 0.96999 * 120.00198 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99929 * 60.00119 * 11 9 7 26 26 H 1.09006 * 109.46883 * 57.62021 * 12 9 7 27 27 H 1.09004 * 109.47166 * 297.62653 * 12 9 7 28 28 H 1.08994 * 109.92957 * 240.91525 * 14 13 12 29 29 H 1.08997 * 109.92869 * 2.25120 * 14 13 12 30 30 H 1.09000 * 109.23427 * 281.50477 * 17 15 14 31 31 H 1.08999 * 109.23182 * 40.88045 * 17 15 14 32 32 H 1.09002 * 109.63714 * 58.23060 * 18 17 15 33 33 H 1.08998 * 109.63885 * 178.64260 * 18 17 15 34 34 H 1.00895 * 110.99958 * 302.66763 * 19 18 17 35 35 H 1.08997 * 109.02959 * 178.65332 * 20 19 18 36 36 H 1.08996 * 109.03071 * 59.80669 * 20 19 18 37 37 H 1.09000 * 110.49337 * 332.99853 * 23 13 12 38 38 H 1.09000 * 110.48976 * 95.51865 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5572 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2453 -3.6621 -0.0005 13 7 1.5118 -4.9335 0.0570 14 6 2.4277 -6.0799 -0.0982 15 6 2.2727 -6.9594 1.1711 16 1 2.3642 -8.0232 0.9517 17 6 3.3241 -6.4740 2.1726 18 6 2.9729 -6.9296 3.5868 19 7 1.6773 -6.3386 3.9586 20 6 0.6176 -6.8899 3.1076 21 6 0.8562 -6.5829 1.6487 22 1 0.1153 -7.1082 1.0460 23 6 0.7936 -5.0744 1.3454 24 1 -0.4850 0.8400 0.0004 25 1 0.9210 -2.5291 -1.9984 26 1 2.8997 -3.5806 0.8674 27 1 2.8436 -3.6286 -0.9111 28 1 2.1567 -6.6547 -0.9838 29 1 3.4552 -5.7259 -0.1817 30 1 4.2974 -6.8794 1.8961 31 1 3.3689 -5.3853 2.1468 32 1 2.9009 -8.0169 3.6141 33 1 3.7439 -6.5959 4.2812 34 1 1.7068 -5.3322 3.8931 35 1 -0.3387 -6.4624 3.4090 36 1 0.5802 -7.9709 3.2419 37 1 1.2977 -4.5066 2.1274 38 1 -0.2408 -4.7462 1.2434 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:30 Heat of formation + Delta-G solvation = -74.547977 kcal Electronic energy + Delta-G solvation = -18298.550776 eV Core-core repulsion = 15560.096875 eV Total energy + Delta-G solvation = -2738.453901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.44864 -38.20888 -36.55260 -34.25540 -32.91437 -32.55400 -29.75033 -28.48019 -26.80810 -24.59669 -23.57776 -22.53156 -21.65965 -20.07088 -19.04152 -17.34513 -16.68795 -16.62368 -16.41069 -16.03545 -15.91749 -15.36032 -14.99688 -14.73670 -14.22745 -13.87599 -13.77096 -13.34257 -13.13968 -12.94172 -12.85685 -12.79352 -12.56944 -12.41449 -12.14435 -12.02777 -11.92992 -11.34484 -11.18351 -11.01547 -10.72238 -10.11543 -9.42880 -9.08741 -8.15624 -6.42691 1.38469 1.40337 1.48714 2.36286 3.07090 3.11223 3.37608 3.53873 3.56468 3.83905 4.12712 4.19863 4.26242 4.28947 4.34654 4.41493 4.48351 4.57521 4.64864 4.75760 4.77201 4.84472 4.94118 4.97406 4.99152 5.05502 5.10334 5.23004 5.39228 5.55966 5.71832 5.96566 6.05561 6.14854 6.21599 6.32260 6.70850 7.31765 7.58218 8.88794 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033728 B = 0.006139 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.974812 B = 4559.579917 C = 4707.352619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.592 4.592 8 H 0.058 0.942 9 C 0.239 3.761 10 H 0.017 0.983 11 O -0.572 6.572 12 C 0.049 3.951 13 N -0.532 5.532 14 C 0.039 3.961 15 C -0.092 4.092 16 H 0.111 0.889 17 C -0.149 4.149 18 C 0.057 3.943 19 N -0.687 5.687 20 C 0.069 3.931 21 C -0.120 4.120 22 H 0.084 0.916 23 C 0.057 3.943 24 H 0.262 0.738 25 H 0.352 0.648 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.334 0.666 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.030 0.970 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -14.994 4.485 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.182 3.818 10 H 0.035 0.965 11 O -0.375 6.375 12 C -0.079 4.079 13 N -0.256 5.256 14 C -0.088 4.088 15 C -0.111 4.111 16 H 0.129 0.871 17 C -0.188 4.188 18 C -0.072 4.072 19 N -0.314 5.314 20 C -0.062 4.062 21 C -0.141 4.141 22 H 0.103 0.897 23 C -0.071 4.071 24 H 0.071 0.929 25 H 0.196 0.804 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.122 -15.367 5.080 16.976 hybrid contribution 1.375 1.914 -0.799 2.489 sum 6.497 -13.453 4.281 15.541 Atomic orbital electron populations 1.70219 1.07724 1.27501 1.48156 1.25916 0.95488 1.02965 0.93259 0.85600 0.78382 0.78379 0.79147 1.19097 1.20848 1.19315 1.22017 0.93443 0.92882 1.54677 0.92420 1.19130 0.87697 0.90101 0.84917 0.96527 1.86501 1.38753 1.96468 1.15755 1.22829 0.95644 0.90258 0.99204 1.63623 1.27108 1.01812 1.33094 1.23222 0.95061 0.91789 0.98758 1.22374 0.93880 1.00486 0.94346 0.87083 1.22247 0.99541 0.99768 0.97233 1.22089 0.91044 1.00675 0.93419 1.61304 1.05198 1.11178 1.53761 1.21458 0.95239 1.01421 0.88038 1.22187 0.98122 0.94381 0.99417 0.89740 1.22765 0.98117 0.96560 0.89625 0.92914 0.80377 0.95999 0.91751 0.90494 0.92965 0.90028 0.94618 0.89307 0.90147 0.84866 0.90926 0.88983 0.95202 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.86 12.84 21.45 0.28 -54.58 16 2 C 0.03 1.50 5.40 84.66 0.46 1.95 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.59 -33.21 8.76 25.60 0.22 -32.98 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.24 12.67 2.79 29.85 0.08 12.75 16 10 H 0.02 1.00 7.30 -2.39 -0.02 0.98 16 11 O -0.57 -31.29 12.64 -148.98 -1.88 -33.18 16 12 C 0.05 2.08 4.11 86.30 0.35 2.44 16 13 N -0.53 -19.64 5.11 -884.37 -4.51 -24.15 16 14 C 0.04 1.11 6.18 86.93 0.54 1.65 16 15 C -0.09 -2.04 3.62 -9.62 -0.03 -2.08 16 16 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 17 C -0.15 -3.20 4.77 30.52 0.15 -3.06 16 18 C 0.06 1.10 6.57 86.14 0.57 1.66 16 19 N -0.69 -15.72 6.97 -517.95 -3.61 -19.33 16 20 C 0.07 1.49 5.96 85.69 0.51 2.01 16 21 C -0.12 -3.01 2.94 -10.72 -0.03 -3.04 16 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 23 C 0.06 1.99 4.54 86.39 0.39 2.38 16 24 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 25 H 0.35 17.24 9.04 -74.06 -0.67 16.57 16 26 H 0.02 0.93 7.43 -2.38 -0.02 0.91 16 27 H 0.06 2.65 8.11 -2.39 -0.02 2.64 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.46 7.18 -2.39 -0.02 1.45 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 0.98 6.70 -2.39 -0.02 0.96 16 32 H 0.09 1.44 8.08 -2.39 -0.02 1.42 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.33 8.68 7.37 -89.70 -0.66 8.02 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.03 1.09 5.85 -2.39 -0.01 1.08 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.28 292.24 -4.78 -70.06 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.28 Total: 31.72 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 3.20 Total: -16.33 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -7.85 Total: -98.06 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.88 Total: -33.18 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.28 -4.78 -70.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.488 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds