Wall clock time and date at job start Sun Mar 29 2020 22:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46758 * 124.35141 * 2 1 4 4 C 1.54482 * 105.47394 * 162.97999 * 3 2 1 5 5 C 1.54628 * 101.76533 * 25.41827 * 4 3 2 6 6 H 1.08999 * 110.49294 * 94.00856 * 5 4 3 7 7 N 1.46898 * 110.48940 * 216.52323 * 5 4 3 8 8 C 1.47957 * 111.00658 * 189.99713 * 7 5 4 9 9 C 1.53928 * 86.18182 * 137.57960 * 8 7 5 10 10 O 1.42903 * 113.73330 * 90.64449 * 9 8 7 11 11 C 1.50704 * 113.73481 * 221.81443 * 9 8 7 12 12 H 1.07996 * 120.00091 * 358.10281 * 11 9 8 13 13 C 1.37881 * 119.99858 * 178.10379 * 11 9 8 14 14 N 1.31518 * 120.00106 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99760 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47026 * 89.99745 * 15 13 11 17 17 H 1.48499 * 109.47091 * 209.99991 * 15 13 11 18 18 H 1.48500 * 109.47226 * 329.99838 * 15 13 11 19 19 C 1.47965 * 111.00104 * 289.36040 * 7 5 4 20 20 C 1.34424 * 124.34778 * 179.97438 * 2 1 3 21 21 O 1.21281 * 124.94122 * 0.44700 * 20 2 1 22 22 H 1.09002 * 109.46621 * 90.00269 * 1 2 3 23 23 H 1.09001 * 109.47321 * 210.00145 * 1 2 3 24 24 H 1.09002 * 109.46946 * 330.00259 * 1 2 3 25 25 H 1.08997 * 110.24604 * 43.98284 * 3 2 1 26 26 H 1.08999 * 110.31821 * 282.01794 * 3 2 1 27 27 H 1.08994 * 110.97324 * 267.29550 * 4 3 2 28 28 H 1.09004 * 111.00222 * 143.54837 * 4 3 2 29 29 H 1.09005 * 113.75470 * 23.26222 * 8 7 5 30 30 H 1.09000 * 113.85902 * 251.91570 * 8 7 5 31 31 H 0.96700 * 114.00311 * 179.97438 * 10 9 8 32 32 H 0.96998 * 120.00013 * 179.97438 * 14 13 11 33 33 H 1.09001 * 113.75882 * 108.09403 * 19 7 5 34 34 H 1.08997 * 113.75163 * 336.72977 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7010 0.7486 0.4358 5 6 3.6898 -0.7379 0.0102 6 1 4.1216 -0.8535 -0.9839 7 7 4.4213 -1.5575 0.9854 8 6 4.6245 -2.9320 0.4769 9 6 6.0527 -2.8188 1.0397 10 8 6.1771 -3.2741 2.3885 11 6 7.1105 -3.3861 0.1285 12 1 6.8275 -3.8469 -0.8063 13 6 8.4398 -3.3170 0.4883 14 7 8.7845 -2.7563 1.6270 15 14 9.7509 -4.0196 -0.6415 16 1 10.2080 -2.9669 -1.5841 17 1 10.9019 -4.4916 0.1695 18 1 9.1853 -5.1587 -1.4080 19 6 5.8757 -1.2949 0.9140 20 6 2.2235 -1.1098 0.0005 21 8 1.7946 -2.2443 -0.0068 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.8985 1.9382 0.7102 26 1 2.3310 1.6442 -0.9998 27 1 3.8269 0.8447 1.5142 28 1 4.4759 1.3008 -0.0961 29 1 4.5855 -3.0083 -0.6098 30 1 4.0131 -3.6824 0.9780 31 1 7.0730 -3.2050 2.7459 32 1 9.7195 -2.7080 1.8803 33 1 6.2634 -0.7359 1.7657 34 1 6.2026 -0.8924 -0.0448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642833809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:48 Heat of formation + Delta-G solvation = -36.546770 kcal Electronic energy + Delta-G solvation = -17829.458076 eV Core-core repulsion = 14956.818936 eV Total energy + Delta-G solvation = -2872.639140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43992 -38.40119 -36.14077 -34.32212 -32.12239 -31.89977 -28.13740 -26.89000 -25.85944 -25.00984 -23.21635 -21.08466 -19.19660 -18.62428 -17.26289 -16.63382 -16.31211 -15.28440 -15.07426 -14.78885 -13.97231 -13.88181 -13.64252 -13.20748 -13.05819 -12.59564 -12.42368 -12.12130 -12.01239 -11.82346 -11.44486 -11.20212 -11.01414 -10.89229 -10.50250 -10.37528 -10.06996 -9.39603 -9.21342 -8.66693 -8.61107 -8.20063 -7.82507 -6.24414 -4.34386 2.83402 3.11582 3.20271 3.28217 3.32653 4.27036 4.48251 4.60244 4.74155 4.99653 5.10324 5.17309 5.31102 5.38242 5.45373 5.62484 5.65990 5.88732 5.97631 6.03445 6.26761 6.34240 6.41245 6.59419 6.84296 7.04177 7.13933 7.21712 7.38737 7.77642 7.93365 8.03285 8.43010 8.68207 9.35775 9.66310 10.81246 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044481 B = 0.006088 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.328749 B = 4598.407743 C = 4675.778941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.631 5.631 3 C 0.108 3.892 4 C -0.123 4.123 5 C 0.014 3.986 6 H 0.079 0.921 7 N -0.462 5.462 8 C 0.023 3.977 9 C 0.242 3.758 10 O -0.570 6.570 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.902 3.098 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.009 4.009 20 C 0.530 3.470 21 O -0.520 6.520 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.387 0.613 32 H 0.270 0.730 33 H 0.076 0.924 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.379 9.956 -3.564 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.367 5.367 3 C -0.016 4.016 4 C -0.161 4.161 5 C -0.098 4.098 6 H 0.097 0.903 7 N -0.186 5.186 8 C -0.106 4.106 9 C 0.200 3.800 10 O -0.381 6.381 11 C -0.575 4.575 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.138 4.138 20 C 0.317 3.683 21 O -0.394 6.394 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.241 0.759 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.544 9.384 -2.919 14.414 hybrid contribution 1.622 -0.014 -1.418 2.155 sum -8.922 9.370 -4.337 13.646 Atomic orbital electron populations 1.21472 0.78528 1.02885 1.01395 1.48135 1.06166 1.07564 1.74875 1.22052 0.90999 0.87237 1.01308 1.22637 0.95620 0.94263 1.03626 1.22938 0.93205 0.95576 0.98115 0.90304 1.68676 1.09687 1.02878 1.37394 1.24053 0.98042 0.90538 0.97934 1.19806 0.90318 0.87898 0.81972 1.86070 1.36889 1.86875 1.28281 1.21653 0.91232 1.39150 1.05434 0.91623 1.25058 0.98715 0.93950 0.95365 1.69432 1.18378 1.44079 1.21939 0.86424 0.80732 0.79457 0.80418 1.20486 1.20923 1.19657 1.24723 0.85587 1.03304 1.00145 1.20808 0.88929 0.84160 0.74359 1.90681 1.78502 1.21094 1.49124 0.93019 0.90837 0.91342 0.90575 0.91422 0.88965 0.89426 0.91727 0.90393 0.75890 0.91957 0.90598 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.96 59.85 0.66 1.72 16 2 N -0.63 -8.73 3.33 -180.29 -0.60 -9.33 16 3 C 0.11 1.14 7.35 -3.12 -0.02 1.12 16 4 C -0.12 -1.62 6.40 -25.10 -0.16 -1.78 16 5 C 0.01 0.25 2.20 -67.72 -0.15 0.10 16 6 H 0.08 1.37 7.77 -51.93 -0.40 0.97 16 7 N -0.46 -10.01 5.97 -230.29 -1.37 -11.38 16 8 C 0.02 0.54 6.36 -2.77 -0.02 0.52 16 9 C 0.24 6.26 1.41 -90.84 -0.13 6.13 16 10 O -0.57 -15.78 13.50 -35.23 -0.48 -16.26 16 11 C -0.54 -14.48 8.62 -34.44 -0.30 -14.77 16 12 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 14 N -0.90 -23.98 11.19 55.43 0.62 -23.36 16 15 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 C -0.01 -0.20 6.94 -2.77 -0.02 -0.22 16 20 C 0.53 9.68 7.63 -10.86 -0.08 9.60 16 21 O -0.52 -11.41 16.67 5.56 0.09 -11.32 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.89 7.93 -51.93 -0.41 0.47 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.48 7.72 -51.93 -0.40 1.08 16 30 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 31 H 0.39 10.73 6.56 45.56 0.30 11.03 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 34 H 0.06 1.33 7.79 -51.93 -0.40 0.92 16 LS Contribution 283.76 15.07 4.28 4.28 Total: -1.00 -31.07 283.76 -7.05 -38.11 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.25 Total: 9.66 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.32 Total: 4.20 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.36 Total: -44.07 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.38 Total: -27.58 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.07 -7.05 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642833809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.568 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds