Wall clock time and date at job start Sun Mar 29 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46758 * 124.35141 * 2 1 4 4 C 1.54482 * 105.47394 * 162.97999 * 3 2 1 5 5 C 1.54628 * 101.76533 * 25.41827 * 4 3 2 6 6 H 1.08999 * 110.49294 * 94.00856 * 5 4 3 7 7 N 1.46898 * 110.48940 * 216.52323 * 5 4 3 8 8 C 1.47957 * 111.00658 * 189.99713 * 7 5 4 9 9 C 1.53928 * 86.18182 * 137.57960 * 8 7 5 10 10 O 1.42903 * 113.73330 * 90.64449 * 9 8 7 11 11 C 1.50704 * 113.73481 * 221.81443 * 9 8 7 12 12 H 1.07996 * 120.00091 * 358.10281 * 11 9 8 13 13 C 1.37881 * 119.99858 * 178.10379 * 11 9 8 14 14 N 1.31518 * 120.00106 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99760 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47026 * 89.99745 * 15 13 11 17 17 H 1.48499 * 109.47091 * 209.99991 * 15 13 11 18 18 H 1.48500 * 109.47226 * 329.99838 * 15 13 11 19 19 C 1.47965 * 111.00104 * 289.36040 * 7 5 4 20 20 C 1.34424 * 124.34778 * 179.97438 * 2 1 3 21 21 O 1.21281 * 124.94122 * 0.44700 * 20 2 1 22 22 H 1.09002 * 109.46621 * 90.00269 * 1 2 3 23 23 H 1.09001 * 109.47321 * 210.00145 * 1 2 3 24 24 H 1.09002 * 109.46946 * 330.00259 * 1 2 3 25 25 H 1.08997 * 110.24604 * 43.98284 * 3 2 1 26 26 H 1.08999 * 110.31821 * 282.01794 * 3 2 1 27 27 H 1.08994 * 110.97324 * 267.29550 * 4 3 2 28 28 H 1.09004 * 111.00222 * 143.54837 * 4 3 2 29 29 H 1.09005 * 113.75470 * 23.26222 * 8 7 5 30 30 H 1.09000 * 113.85902 * 251.91570 * 8 7 5 31 31 H 0.96700 * 114.00311 * 179.97438 * 10 9 8 32 32 H 0.96998 * 120.00013 * 179.97438 * 14 13 11 33 33 H 1.09001 * 113.75882 * 108.09403 * 19 7 5 34 34 H 1.08997 * 113.75163 * 336.72977 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7010 0.7486 0.4358 5 6 3.6898 -0.7379 0.0102 6 1 4.1216 -0.8535 -0.9839 7 7 4.4213 -1.5575 0.9854 8 6 4.6245 -2.9320 0.4769 9 6 6.0527 -2.8188 1.0397 10 8 6.1771 -3.2741 2.3885 11 6 7.1105 -3.3861 0.1285 12 1 6.8275 -3.8469 -0.8063 13 6 8.4398 -3.3170 0.4883 14 7 8.7845 -2.7563 1.6270 15 14 9.7509 -4.0196 -0.6415 16 1 10.2080 -2.9669 -1.5841 17 1 10.9019 -4.4916 0.1695 18 1 9.1853 -5.1587 -1.4080 19 6 5.8757 -1.2949 0.9140 20 6 2.2235 -1.1098 0.0005 21 8 1.7946 -2.2443 -0.0068 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.8985 1.9382 0.7102 26 1 2.3310 1.6442 -0.9998 27 1 3.8269 0.8447 1.5142 28 1 4.4759 1.3008 -0.0961 29 1 4.5855 -3.0083 -0.6098 30 1 4.0131 -3.6824 0.9780 31 1 7.0730 -3.2050 2.7459 32 1 9.7195 -2.7080 1.8803 33 1 6.2634 -0.7359 1.7657 34 1 6.2026 -0.8924 -0.0448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642833809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:47 Heat of formation + Delta-G solvation = -62.509163 kcal Electronic energy + Delta-G solvation = -17830.583890 eV Core-core repulsion = 14956.818936 eV Total energy + Delta-G solvation = -2873.764953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83720 -40.09978 -37.47289 -36.20731 -34.13661 -33.23684 -29.67400 -28.15028 -27.40784 -26.79895 -24.80576 -22.34200 -20.61048 -20.46735 -19.20081 -17.87230 -17.61508 -17.12319 -16.73795 -16.35057 -15.63439 -15.40138 -14.98733 -14.61222 -14.52485 -14.11124 -13.68760 -13.53820 -13.39910 -13.36126 -12.99162 -12.90692 -12.79407 -12.29089 -12.27582 -12.10815 -11.91016 -11.19297 -10.76720 -10.64479 -10.15832 -9.72852 -9.63961 -8.24598 -6.43059 1.41985 1.44447 1.46360 1.55236 2.04957 2.38009 2.95524 3.11854 3.27470 3.59914 3.89067 4.04305 4.13411 4.25201 4.37026 4.40199 4.45699 4.55230 4.65600 4.69048 4.84139 4.88582 4.95812 5.13084 5.14348 5.35843 5.38817 5.60983 5.73165 5.98237 6.01528 6.22375 6.61428 7.12468 7.29957 7.51936 8.80426 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044481 B = 0.006088 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.328749 B = 4598.407743 C = 4675.778941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.623 5.623 3 C 0.109 3.891 4 C -0.116 4.116 5 C 0.004 3.996 6 H 0.081 0.919 7 N -0.467 5.467 8 C 0.030 3.970 9 C 0.216 3.784 10 O -0.585 6.585 11 C -0.563 4.563 12 H 0.059 0.941 13 C 0.032 3.968 14 N -0.915 5.915 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.275 1.275 19 C 0.012 3.988 20 C 0.516 3.484 21 O -0.573 6.573 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.383 0.617 32 H 0.275 0.725 33 H 0.069 0.931 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 12.314 -4.580 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.357 5.357 3 C -0.012 4.012 4 C -0.154 4.154 5 C -0.108 4.108 6 H 0.098 0.902 7 N -0.191 5.191 8 C -0.099 4.099 9 C 0.175 3.825 10 O -0.396 6.396 11 C -0.601 4.601 12 H 0.077 0.923 13 C -0.168 4.168 14 N -0.555 5.555 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.200 1.200 19 C -0.117 4.117 20 C 0.304 3.696 21 O -0.452 6.452 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.125 0.875 25 H 0.128 0.872 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.735 11.810 -3.934 16.437 hybrid contribution 1.605 -0.705 -1.084 2.061 sum -9.130 11.105 -5.018 15.227 Atomic orbital electron populations 1.21722 0.76566 1.03780 1.02728 1.48299 1.07555 1.07316 1.72526 1.22347 0.88656 0.86215 1.04030 1.22691 0.98410 0.90933 1.03405 1.23093 0.92611 0.97802 0.97312 0.90161 1.68520 1.09329 1.02146 1.39120 1.23870 0.96601 0.91768 0.97667 1.20178 0.91125 0.90126 0.81033 1.86053 1.36593 1.87452 1.29519 1.21833 0.92289 1.40362 1.05660 0.92264 1.25766 1.00367 0.93951 0.96736 1.69496 1.19046 1.44126 1.22862 0.85420 0.78004 0.78737 0.78628 1.19367 1.20380 1.19957 1.24408 0.86378 1.00781 1.00137 1.20980 0.89647 0.84506 0.74510 1.90647 1.79287 1.23281 1.51951 0.91471 0.92866 0.87519 0.87207 0.88348 0.89890 0.87012 0.91470 0.92746 0.76384 0.91509 0.91284 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 10.96 127.77 1.40 3.14 16 2 N -0.62 -15.61 3.33 -842.89 -2.81 -18.42 16 3 C 0.11 1.84 7.35 86.83 0.64 2.47 16 4 C -0.12 -2.72 6.40 31.65 0.20 -2.51 16 5 C 0.00 0.15 2.20 44.91 0.10 0.24 16 6 H 0.08 2.72 7.77 -2.39 -0.02 2.71 16 7 N -0.47 -20.43 5.97 -885.70 -5.29 -25.72 16 8 C 0.03 1.47 6.36 86.40 0.55 2.02 16 9 C 0.22 11.46 1.41 -10.90 -0.02 11.45 16 10 O -0.59 -33.43 13.50 -148.98 -2.01 -35.44 16 11 C -0.56 -30.86 8.62 25.60 0.22 -30.63 16 12 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 13 C 0.03 1.69 5.39 84.65 0.46 2.15 16 14 N -0.91 -48.87 11.19 21.45 0.24 -48.63 16 15 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.01 0.54 6.94 86.40 0.60 1.14 16 20 C 0.52 18.61 7.63 87.90 0.67 19.28 16 21 O -0.57 -25.87 16.67 -3.03 -0.05 -25.92 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 28 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.07 3.20 7.72 -2.38 -0.02 3.18 16 30 H 0.05 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.38 21.86 6.56 -74.06 -0.49 21.38 16 32 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 33 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.07 2.99 7.79 -2.39 -0.02 2.97 16 Total: -1.00 -69.25 283.76 -2.46 -71.71 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.61 Total: 30.06 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 4.82 Total: 8.76 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -7.86 Total: -92.77 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -2.06 Total: -61.36 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -69.25 -2.46 -71.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642833809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.200 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds