Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46660 * 2 1 4 4 N 1.46894 * 109.47481 * 239.99605 * 2 1 3 5 5 C 1.46910 * 110.99774 * 84.99813 * 4 2 1 6 6 C 1.53000 * 109.47107 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47088 * 59.99909 * 6 5 4 8 8 O 1.42895 * 109.47100 * 300.00288 * 6 5 4 9 9 C 1.50693 * 109.47128 * 179.97438 * 6 5 4 10 10 H 1.08005 * 120.00292 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00294 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99636 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00349 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.46993 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47223 * 119.99958 * 13 11 9 16 16 H 1.48490 * 109.47428 * 239.99956 * 13 11 9 17 17 C 1.50700 * 109.46955 * 119.99435 * 2 1 3 18 18 N 1.33251 * 125.52332 * 75.24225 * 17 2 1 19 19 C 1.30831 * 109.82578 * 180.19922 * 18 17 2 20 20 N 1.34438 * 108.07816 * 359.59820 * 19 18 17 21 21 C 1.46494 * 126.82245 * 180.20890 * 20 19 18 22 22 N 1.30712 * 125.53084 * 254.99912 * 17 2 1 23 23 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47251 * 299.99717 * 1 2 3 25 25 H 1.09000 * 109.47401 * 60.00415 * 1 2 3 26 26 H 1.00898 * 111.00544 * 321.04924 * 4 2 1 27 27 H 1.08995 * 109.47279 * 300.00050 * 5 4 2 28 28 H 1.08993 * 109.46842 * 60.00209 * 5 4 2 29 29 H 0.96706 * 114.00254 * 299.99472 * 8 6 5 30 30 H 0.97002 * 119.99454 * 179.97438 * 12 11 9 31 31 H 1.08002 * 125.96273 * 179.86887 * 19 18 17 32 32 H 1.09000 * 109.47284 * 90.02473 * 21 20 19 33 33 H 1.09003 * 109.47324 * 210.02914 * 21 20 19 34 34 H 1.09004 * 109.47280 * 330.02502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3469 6 6 2.5963 -0.5329 -3.5741 7 1 1.9204 -1.3568 -3.8029 8 8 3.9014 -1.0485 -3.3041 9 6 2.6601 0.4056 -4.7514 10 1 2.3642 1.4379 -4.6358 11 6 3.0973 -0.0531 -5.9759 12 7 3.4582 -1.3100 -6.1166 13 14 3.1771 1.1104 -7.4351 14 1 2.7207 2.4603 -7.0172 15 1 4.5757 1.1917 -7.9275 16 1 2.2989 0.6044 -8.5203 17 6 2.0323 -0.7103 1.2305 18 7 2.0299 -2.0295 1.4182 19 6 2.5308 -2.3114 2.5935 20 7 2.8776 -1.1562 3.1872 21 6 3.4815 -0.9967 4.5123 22 7 2.5450 -0.1326 2.2850 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.4497 -1.4980 -1.4100 27 1 1.0871 0.6162 -2.5526 28 1 2.7588 1.0461 -2.1182 29 1 4.5565 -0.3695 -3.0921 30 1 3.7654 -1.6328 -6.9782 31 1 2.6494 -3.3000 3.0118 32 1 4.5674 -1.0225 4.4222 33 1 3.1749 -0.0416 4.9389 34 1 3.1515 -1.8074 5.1620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658268334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = 41.247259 kcal Electronic energy + Delta-G solvation = -16924.198303 eV Core-core repulsion = 14087.225316 eV Total energy + Delta-G solvation = -2836.972986 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.93095 -37.07667 -35.14849 -33.62472 -32.01160 -31.28015 -29.99753 -27.24866 -27.14566 -24.37208 -22.92066 -21.93968 -20.51739 -19.78815 -16.97105 -16.83718 -15.94507 -15.39424 -14.89704 -14.56019 -14.33971 -13.99180 -13.66969 -13.48057 -13.27501 -12.90248 -12.46879 -12.29109 -11.77409 -11.66783 -11.18374 -11.07259 -10.89302 -10.69434 -10.67944 -10.00828 -9.80526 -9.67208 -9.38946 -8.92539 -8.51827 -8.01608 -7.66482 -5.94117 -4.12366 1.70630 2.34513 3.10447 3.30896 3.38944 3.42320 4.20600 4.38387 4.44104 4.71815 4.89432 4.94273 5.13621 5.22324 5.33694 5.40063 5.52368 5.82653 5.96907 6.21469 6.26189 6.29902 6.42371 6.52933 6.61565 6.87528 6.91728 7.63546 7.78268 7.92433 8.05408 8.27896 8.28621 8.92008 9.53742 9.70572 11.10082 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048216 B = 0.004550 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.586521 B = 6153.007692 C = 6346.670031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.174 3.826 3 H 0.094 0.906 4 N -0.666 5.666 5 C 0.035 3.965 6 C 0.235 3.765 7 H 0.053 0.947 8 O -0.554 6.554 9 C -0.572 4.572 10 H 0.055 0.945 11 C 0.079 3.921 12 N -0.858 5.858 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.254 3.746 18 N -0.522 5.522 19 C 0.246 3.754 20 N -0.393 5.393 21 C 0.100 3.900 22 N -0.325 5.325 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.347 0.653 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.343 0.657 30 H 0.259 0.741 31 H 0.215 0.785 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 0.123 19.424 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 H 0.112 0.888 4 N -0.297 5.297 5 C -0.094 4.094 6 C 0.177 3.823 7 H 0.070 0.930 8 O -0.356 6.356 9 C -0.611 4.611 10 H 0.074 0.926 11 C -0.127 4.127 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.029 4.029 18 N -0.248 5.248 19 C -0.051 4.051 20 N -0.185 5.185 21 C -0.042 4.042 22 N -0.154 5.154 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.166 0.834 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.186 0.814 30 H 0.069 0.931 31 H 0.232 0.768 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.369 0.017 19.273 19.418 hybrid contribution -0.448 1.013 -0.580 1.250 sum -2.817 1.030 18.693 18.932 Atomic orbital electron populations 1.22436 0.95779 1.02852 1.02294 1.19673 0.92395 0.96170 0.85731 0.88806 1.60282 1.56908 1.09688 1.02837 1.22969 0.99034 0.95671 0.91680 1.19301 0.82667 0.92906 0.87457 0.92956 1.86564 1.20356 1.36596 1.92040 1.21685 1.47354 0.96867 0.95163 0.92629 1.25035 0.94262 0.94844 0.98574 1.70106 1.41339 1.14108 1.23840 0.86624 0.77717 0.81282 0.82779 1.19750 1.20921 1.20943 1.24253 0.95496 0.88482 0.94711 1.70395 1.23497 1.15375 1.15579 1.26059 0.95696 0.93320 0.90067 1.50356 1.47541 1.05024 1.15558 1.21855 0.98643 1.04474 0.79266 1.77986 1.23207 1.11793 1.02383 0.91695 0.92565 0.91307 0.83371 0.95641 0.92114 0.81446 0.93105 0.76827 0.90471 0.89342 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.14 37.16 0.34 -2.10 16 2 C 0.17 2.89 3.13 -68.87 -0.22 2.67 16 3 H 0.09 1.55 7.80 -51.93 -0.40 1.15 16 4 N -0.67 -12.87 6.09 -107.95 -0.66 -13.53 16 5 C 0.04 0.74 5.09 -3.82 -0.02 0.72 16 6 C 0.23 6.10 3.03 -27.89 -0.08 6.02 16 7 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 8 O -0.55 -15.07 12.60 -35.23 -0.44 -15.52 16 9 C -0.57 -15.95 8.76 -34.44 -0.30 -16.25 16 10 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 11 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 12 N -0.86 -25.91 12.84 55.43 0.71 -25.19 16 13 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.25 4.29 6.99 -156.85 -1.10 3.20 16 18 N -0.52 -8.51 11.18 -11.97 -0.13 -8.65 16 19 C 0.25 2.95 12.66 -90.65 -1.15 1.81 16 20 N -0.39 -4.74 4.04 -69.44 -0.28 -5.02 16 21 C 0.10 0.64 11.53 59.84 0.69 1.33 16 22 N -0.33 -5.22 12.70 32.42 0.41 -4.81 16 23 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.94 7.45 -51.93 -0.39 0.55 16 26 H 0.35 6.80 8.47 -39.29 -0.33 6.46 16 27 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 28 H 0.06 1.27 8.05 -51.93 -0.42 0.86 16 29 H 0.34 8.49 9.04 45.56 0.41 8.90 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.22 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -35.19 297.23 -6.88 -42.07 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.02 Total: 10.21 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.93 Total: -0.47 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.05 Total: -57.20 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.44 Total: -15.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.19 -6.88 -42.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658268334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.318 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds