Wall clock time and date at job start Sun Mar 29 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.53001 * 109.47079 * 66.05379 * 3 2 1 5 5 N 1.46502 * 109.47251 * 179.97438 * 4 3 2 6 6 C 1.35488 * 126.98352 * 269.68087 * 5 4 3 7 7 N 1.30521 * 107.31051 * 179.83793 * 6 5 4 8 8 N 1.28592 * 109.67011 * 0.43874 * 7 6 5 9 9 C 1.30520 * 109.67658 * 359.72558 * 8 7 6 10 10 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 11 11 C 1.53000 * 109.47123 * 293.95674 * 10 2 1 12 12 H 1.09002 * 109.47398 * 59.99875 * 11 10 2 13 13 O 1.42903 * 109.46726 * 299.99631 * 11 10 2 14 14 C 1.50699 * 109.47083 * 179.97438 * 11 10 2 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47319 * 60.00570 * 18 16 14 20 20 H 1.48503 * 109.46734 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47266 * 300.00384 * 18 16 14 22 22 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 23 23 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 24 24 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 25 25 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 26 26 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 27 27 H 1.09008 * 109.46777 * 299.99774 * 4 3 2 28 28 H 1.09000 * 109.47382 * 59.99379 * 4 3 2 29 29 H 1.08000 * 126.34303 * 359.97438 * 6 5 4 30 30 H 1.07998 * 126.35135 * 179.97438 * 9 8 7 31 31 H 1.08992 * 109.47078 * 173.95361 * 10 2 1 32 32 H 1.09004 * 109.46829 * 53.95008 * 10 2 1 33 33 H 0.96700 * 114.00234 * 300.00043 * 13 11 10 34 34 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6316 2.0573 1.3184 5 7 2.1571 3.4248 1.3186 6 6 3.3704 3.8316 1.7637 7 7 3.4388 5.1220 1.5801 8 7 2.3419 5.5436 1.0580 9 6 1.5262 4.5405 0.8793 10 6 1.9954 -0.7660 -1.1377 11 6 1.6313 -2.2426 -0.9705 12 1 0.5470 -2.3475 -0.9325 13 8 2.2008 -2.7392 0.2424 14 6 2.1707 -3.0282 -2.1379 15 1 2.7181 -2.5246 -2.9210 16 6 1.9655 -4.3899 -2.2063 17 7 1.2985 -5.0031 -1.2530 18 14 2.6348 -5.3638 -3.6530 19 1 4.1119 -5.2208 -3.7051 20 1 2.2813 -6.7970 -3.4908 21 1 2.0427 -4.8480 -4.9134 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5739 0.8526 24 1 -0.3634 0.4513 -0.9232 25 1 3.0798 1.3443 -0.1083 26 1 1.5611 1.9274 -0.8308 27 1 0.5472 2.0843 1.4267 28 1 2.0659 1.5013 2.1492 29 1 4.1394 3.2040 2.1893 30 1 0.5324 4.5905 0.4595 31 1 3.0796 -0.6611 -1.1758 32 1 1.5609 -0.3872 -2.0628 33 1 3.1652 -2.6772 0.2784 34 1 1.1537 -5.9610 -1.3013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660012307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:54 Heat of formation + Delta-G solvation = 39.602617 kcal Electronic energy + Delta-G solvation = -16939.548807 eV Core-core repulsion = 14102.504503 eV Total energy + Delta-G solvation = -2837.044303 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.17720 -38.03450 -35.73272 -34.38992 -32.16019 -30.66746 -29.91187 -28.12871 -26.40878 -24.58463 -22.54842 -22.37127 -21.31406 -20.16603 -17.72463 -17.00518 -16.16474 -15.53146 -15.35143 -14.87605 -14.73782 -14.56694 -14.40143 -13.79281 -13.47863 -12.99512 -12.52103 -12.49108 -11.63248 -11.48260 -11.30628 -11.21668 -10.98462 -10.88850 -10.68665 -10.48826 -10.33348 -10.10929 -9.53280 -9.12160 -8.64431 -8.26447 -7.93333 -6.08653 -4.27758 1.71315 2.34631 2.80488 3.23303 3.29251 3.30526 4.11599 4.33814 4.35816 4.47512 4.61288 4.72120 5.08940 5.18870 5.19493 5.25867 5.46562 5.63654 5.67861 5.78323 5.96026 6.01825 6.07745 6.27621 6.39238 6.65344 6.70858 7.24881 7.29190 7.65573 7.76459 8.09756 8.60418 8.75604 9.36690 9.52640 10.95412 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.054422 B = 0.004203 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.375098 B = 6660.206811 C = 6791.552543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.040 3.960 4 C 0.106 3.894 5 N -0.471 5.471 6 C 0.154 3.846 7 N -0.305 5.305 8 N -0.304 5.304 9 C 0.149 3.851 10 C 0.031 3.969 11 C 0.238 3.762 12 H 0.056 0.944 13 O -0.554 6.554 14 C -0.578 4.578 15 H 0.054 0.946 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.890 3.110 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.276 1.276 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.021 0.979 25 H 0.078 0.922 26 H 0.034 0.966 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.218 0.782 30 H 0.215 0.785 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.343 0.657 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 11.445 4.310 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.251 5.251 3 C -0.090 4.090 4 C -0.017 4.017 5 N -0.161 5.161 6 C -0.134 4.134 7 N -0.145 5.145 8 N -0.144 5.144 9 C -0.139 4.139 10 C -0.096 4.096 11 C 0.180 3.820 12 H 0.073 0.927 13 O -0.356 6.356 14 C -0.617 4.617 15 H 0.072 0.928 16 C -0.125 4.125 17 N -0.493 5.493 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.202 1.202 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.234 0.766 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.186 0.814 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.823 12.316 4.950 13.299 hybrid contribution 0.076 -1.509 -1.870 2.405 sum -0.747 10.806 3.080 11.262 Atomic orbital electron populations 1.22492 0.87732 1.03528 0.99040 1.61996 1.07769 1.09621 1.45687 1.22396 1.01283 0.90825 0.94489 1.22094 1.00980 0.77430 1.01154 1.46587 1.14193 1.09993 1.45337 1.26576 0.89376 0.94529 1.02888 1.74239 1.16148 1.07931 1.16135 1.74229 0.98675 1.25438 1.16025 1.26508 1.01920 0.82227 1.03218 1.23158 0.99155 0.98321 0.88941 1.19317 0.94885 0.84087 0.83731 0.92662 1.86560 1.22241 1.86355 1.40440 1.21596 1.38638 0.93415 1.08026 0.92786 1.25008 0.94148 0.97825 0.95534 1.70059 1.38043 1.09633 1.31584 0.86727 0.79604 0.79060 0.82924 1.20087 1.21113 1.20189 0.89809 0.92373 0.96089 0.90325 0.94752 0.88322 0.87217 0.76561 0.76846 0.91700 0.95241 0.81383 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 60.06 0.55 0.83 16 2 N -0.53 -7.99 4.63 -242.92 -1.12 -9.12 16 3 C 0.04 0.46 5.28 -3.83 -0.02 0.44 16 4 C 0.11 0.95 6.13 -4.04 -0.02 0.93 16 5 N -0.47 -4.70 2.75 -119.97 -0.33 -5.03 16 6 C 0.15 1.67 12.74 -89.95 -1.15 0.52 16 7 N -0.30 -4.35 12.21 29.69 0.36 -3.99 16 8 N -0.30 -4.32 12.21 29.69 0.36 -3.96 16 9 C 0.15 1.59 12.74 -89.94 -1.15 0.45 16 10 C 0.03 0.59 4.56 -3.82 -0.02 0.57 16 11 C 0.24 5.62 2.69 -27.88 -0.08 5.55 16 12 H 0.06 1.44 6.55 -51.93 -0.34 1.10 16 13 O -0.55 -13.53 12.60 -35.23 -0.44 -13.97 16 14 C -0.58 -15.18 8.76 -34.44 -0.30 -15.49 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 16 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 17 N -0.86 -24.53 12.84 55.43 0.71 -23.82 16 18 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H 0.08 1.40 6.47 -51.93 -0.34 1.07 16 23 H 0.06 0.64 6.30 -51.92 -0.33 0.31 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.95 7.93 -51.92 -0.41 0.54 16 26 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.10 0.77 6.47 -51.92 -0.34 0.43 16 28 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.22 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 32 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.34 7.51 9.04 45.56 0.41 7.92 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 290.92 15.07 4.38 4.38 Total: -1.00 -32.27 290.92 -7.20 -39.47 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.83 Total: 4.64 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.28 Total: -4.09 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.02 Total: -45.91 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.44 Total: -13.97 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.27 -7.20 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660012307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.074 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds