Wall clock time and date at job start Sun Mar 29 2020 22:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 9 9 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 10 10 N 1.46898 * 109.47548 * 179.97438 * 8 7 6 11 11 C 1.46900 * 111.00190 * 275.00196 * 10 8 7 12 12 C 1.50698 * 109.47212 * 179.97438 * 11 10 8 13 13 O 1.21295 * 119.99984 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00114 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00276 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00223 * 359.97438 * 15 14 12 17 17 C 1.38956 * 120.00210 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47446 * 90.00139 * 19 17 15 21 21 H 1.48507 * 109.46779 * 209.99939 * 19 17 15 22 22 H 1.48496 * 109.47309 * 329.99399 * 19 17 15 23 23 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 25 25 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 26 26 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 27 27 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 28 28 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 29 29 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 31 31 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 34 34 H 1.00896 * 110.99675 * 38.95895 * 10 8 7 35 35 H 1.09002 * 109.47391 * 299.99994 * 11 10 8 36 36 H 1.09005 * 109.46934 * 60.00097 * 11 10 8 37 37 H 0.97004 * 119.99984 * 0.02562 * 14 12 11 38 38 H 0.96997 * 119.99755 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6758 -1.7491 1.2491 10 7 1.5498 -0.0296 2.4490 11 6 1.4864 -0.9453 3.5960 12 6 0.9815 -0.2014 4.8054 13 8 0.7015 0.9757 4.7202 14 7 0.8401 -0.8443 5.9814 15 6 0.3803 -0.1677 7.0816 16 1 0.1317 0.8806 7.0060 17 6 0.2349 -0.8304 8.2942 18 7 0.5378 -2.1058 8.3864 19 14 -0.3923 0.0913 9.7930 20 1 -1.8732 -0.0025 9.8480 21 1 0.1876 -0.5086 11.0215 22 1 0.0104 1.5177 9.7012 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -0.2075 -2.1392 27 1 1.6767 -1.7489 -1.2491 28 1 3.9337 0.3057 -1.2486 29 1 3.9334 -1.2360 -2.1386 30 1 3.7158 -2.4710 0.0002 31 1 5.1695 -1.4434 0.0009 32 1 3.9327 -1.2359 2.1397 33 1 3.9332 0.3054 1.2498 34 1 2.1201 0.7755 2.6602 35 1 0.8098 -1.7686 3.3667 36 1 2.4817 -1.3395 3.8016 37 1 1.0636 -1.7858 6.0495 38 1 0.4367 -2.5683 9.2330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020052657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:46 Heat of formation + Delta-G solvation = -66.141854 kcal Electronic energy + Delta-G solvation = -17403.295634 eV Core-core repulsion = 14665.206250 eV Total energy + Delta-G solvation = -2738.089384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27418 -37.96029 -34.56693 -33.70630 -32.46368 -31.19250 -29.55709 -26.70372 -25.47175 -23.90150 -21.91112 -21.04623 -20.03870 -19.05254 -17.83399 -16.21803 -15.24637 -15.01755 -14.68993 -14.38100 -14.34618 -14.07669 -13.73715 -13.33960 -13.17712 -12.56958 -12.15963 -12.06905 -11.88294 -11.61606 -11.48727 -11.33133 -11.13077 -11.02239 -10.87115 -10.42183 -10.37728 -10.30778 -10.20394 -10.06184 -9.48063 -8.39167 -7.95300 -7.87807 -6.39109 -3.79743 3.19818 3.28070 3.34105 3.95068 4.13221 4.36242 4.64608 4.73506 4.90936 5.12505 5.14821 5.23637 5.29326 5.41573 5.45432 5.50635 5.53564 5.70301 5.80339 5.85406 5.95494 5.97288 6.03586 6.05545 6.07216 6.17075 6.22310 6.30255 6.35520 6.50887 6.67739 7.36051 7.57715 7.77672 8.09684 8.64715 9.20899 9.57867 10.09668 10.78807 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049900 B = 0.004417 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.985429 B = 6337.513387 C = 6602.263666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.152 4.152 8 C 0.093 3.907 9 H 0.074 0.926 10 N -0.661 5.661 11 C 0.051 3.949 12 C 0.442 3.558 13 O -0.583 6.583 14 N -0.565 5.565 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.348 0.652 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.392 0.608 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -1.453 -16.092 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.191 4.191 8 C -0.018 4.018 9 H 0.092 0.908 10 N -0.292 5.292 11 C -0.082 4.082 12 C 0.227 3.773 13 O -0.467 6.467 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.649 -0.856 -16.112 16.791 hybrid contribution 0.842 -0.418 1.121 1.463 sum 5.491 -1.274 -14.991 16.016 Atomic orbital electron populations 1.21707 0.94620 1.01368 1.01913 1.21048 0.96336 0.99265 0.92950 0.91424 1.21618 0.95100 1.00747 0.97766 1.21546 0.96050 1.00624 0.97504 1.21465 0.99898 0.99366 0.94529 1.22324 0.97673 1.01048 0.98079 1.21638 0.91500 0.97933 0.90711 0.90765 1.60178 1.57497 1.09034 1.02496 1.21689 0.99725 0.95764 0.90976 1.19858 0.84998 0.88232 0.84196 1.90519 1.55263 1.16303 1.84652 1.41871 1.57904 1.12433 1.07998 1.19706 1.39905 0.96426 0.86795 0.87956 1.25255 0.97699 0.95775 0.99231 1.69614 1.48803 1.08850 1.27173 0.85861 0.78822 0.79477 0.80146 1.20401 1.20963 1.19434 0.93543 0.90676 0.93922 0.92084 0.92113 0.92114 0.92365 0.92069 0.92358 0.92044 0.91809 0.83256 0.89790 0.94053 0.77494 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.04 37.16 0.34 -1.40 16 2 C -0.08 -0.90 2.44 -90.62 -0.22 -1.12 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 5 C -0.12 -1.08 5.92 -26.73 -0.16 -1.23 16 6 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 7 C -0.15 -1.74 5.17 -26.73 -0.14 -1.88 16 8 C 0.09 1.19 1.91 -67.71 -0.13 1.06 16 9 H 0.07 0.97 7.80 -51.93 -0.40 0.57 16 10 N -0.66 -10.88 5.11 -107.99 -0.55 -11.43 16 11 C 0.05 0.93 5.96 -4.98 -0.03 0.90 16 12 C 0.44 10.62 7.82 -10.99 -0.09 10.54 16 13 O -0.58 -16.10 15.78 5.54 0.09 -16.01 16 14 N -0.57 -14.59 5.29 -10.96 -0.06 -14.64 16 15 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 16 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 19 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 1.14 7.60 -51.93 -0.39 0.74 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 33 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.35 5.99 8.17 -39.29 -0.32 5.67 16 35 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 36 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 37 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -30.18 305.96 -7.55 -37.73 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.37 Total: 11.38 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.96 Total: -3.76 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.11 Total: -50.20 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.09 Total: -16.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.18 -7.55 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.416 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds