Wall clock time and date at job start Sun Mar 29 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47038 * 2 1 4 4 N 1.46501 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99987 * 269.75326 * 4 3 2 6 6 H 1.07995 * 119.99890 * 322.09382 * 5 4 3 7 7 C 1.38809 * 120.00369 * 142.09680 * 5 4 3 8 8 N 1.31620 * 120.00397 * 156.97129 * 7 5 4 9 9 Si 1.86803 * 119.99815 * 336.96934 * 7 5 4 10 10 H 1.48500 * 109.47288 * 95.70288 * 9 7 5 11 11 H 1.48504 * 109.47201 * 215.70381 * 9 7 5 12 12 H 1.48506 * 109.47203 * 335.70221 * 9 7 5 13 13 C 1.46498 * 120.00070 * 89.74616 * 4 3 2 14 14 C 1.50702 * 109.46936 * 90.00448 * 13 4 3 15 15 O 1.21288 * 120.00218 * 359.97438 * 14 13 4 16 16 N 1.34783 * 119.99970 * 180.02562 * 14 13 4 17 17 C 1.46499 * 119.99830 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47009 * 179.97438 * 17 16 14 19 19 C 1.53006 * 117.49863 * 243.61634 * 18 17 16 20 20 C 1.53003 * 59.99947 * 252.51158 * 19 18 17 21 21 H 1.09000 * 109.46744 * 59.99924 * 1 2 3 22 22 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47056 * 300.00204 * 1 2 3 24 24 H 1.08996 * 109.46789 * 239.99835 * 2 1 3 25 25 H 1.09000 * 109.46744 * 120.00076 * 2 1 3 26 26 H 1.08996 * 109.47465 * 60.00249 * 3 2 1 27 27 H 1.09000 * 109.47415 * 299.99665 * 3 2 1 28 28 H 0.97002 * 119.99785 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47253 * 330.00528 * 13 4 3 30 30 H 1.09003 * 109.47434 * 209.99950 * 13 4 3 31 31 H 0.97001 * 119.99909 * 359.97438 * 16 14 13 32 32 H 1.09007 * 109.46965 * 299.99398 * 17 16 14 33 33 H 1.08996 * 109.47387 * 59.99079 * 17 16 14 34 34 H 1.08997 * 115.55323 * 29.32495 * 18 17 16 35 35 H 1.08995 * 117.49699 * 0.02562 * 19 18 17 36 36 H 1.09002 * 117.49559 * 145.01848 * 19 18 17 37 37 H 1.09007 * 117.49492 * 252.50861 * 20 19 18 38 38 H 1.08994 * 117.49943 * 107.49166 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4474 1.1850 6 1 3.8214 2.0255 2.0193 7 6 5.3587 0.7095 1.3145 8 7 6.2462 1.0373 2.2296 9 14 5.6719 -0.7488 0.1898 10 1 6.5086 -0.3176 -0.9587 11 1 6.3793 -1.8137 0.9454 12 1 4.3765 -1.2746 -0.3112 13 6 4.2370 1.4371 -1.2696 14 6 4.4880 2.8560 -1.7107 15 8 4.0939 3.7808 -1.0322 16 7 5.1497 3.0975 -2.8599 17 6 5.3942 4.4769 -3.2884 18 6 6.1585 4.4713 -4.6138 19 6 7.5650 5.0738 -4.6208 20 6 6.4095 5.8205 -5.2903 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 7.0626 0.5213 2.3202 29 1 3.6476 0.9201 -2.0268 30 1 5.1895 0.9238 -1.1375 31 1 5.4646 2.3579 -3.4028 32 1 4.4419 4.9907 -3.4200 33 1 5.9841 4.9934 -2.5313 34 1 5.9759 3.6114 -5.2582 35 1 7.9458 5.4737 -3.6811 36 1 8.3078 4.6101 -5.2698 37 1 6.3923 5.8481 -6.3798 38 1 6.0300 6.7120 -4.7911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:30 Heat of formation + Delta-G solvation = 4.819271 kcal Electronic energy + Delta-G solvation = -17541.033875 eV Core-core repulsion = 14806.021596 eV Total energy + Delta-G solvation = -2735.012279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.05330 -37.47000 -35.91621 -33.53409 -32.84118 -31.22254 -28.29484 -26.00863 -25.50480 -22.50958 -22.16941 -20.89802 -20.42032 -19.54213 -17.22330 -16.21992 -16.14217 -15.43190 -14.84315 -14.33554 -14.24310 -14.01534 -13.91260 -13.10121 -12.90504 -12.64539 -12.46930 -12.22607 -11.67247 -11.57405 -11.40574 -11.18326 -10.78770 -10.72723 -10.59463 -10.53487 -10.24818 -10.10588 -9.83395 -9.56745 -9.08277 -8.51427 -8.48753 -6.83561 -5.97973 -3.37861 3.22409 3.39664 3.44922 3.50909 3.58476 3.83845 4.49495 4.61217 4.80636 4.87069 5.01574 5.21465 5.31118 5.49635 5.55785 5.64000 5.71052 5.77922 5.82414 5.92060 5.97507 5.99802 6.04272 6.19451 6.20927 6.22049 6.41464 6.55543 6.58277 6.91852 6.97270 7.10918 7.96525 8.15209 8.44602 8.91917 9.10104 9.70888 10.10200 11.17886 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.007002 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.029587 B = 3997.805427 C = 4748.979461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.156 3.844 4 N -0.579 5.579 5 C -0.256 4.256 6 H 0.079 0.921 7 C 0.032 3.968 8 N -0.895 5.895 9 Si 0.867 3.133 10 H -0.287 1.287 11 H -0.298 1.298 12 H -0.263 1.263 13 C 0.119 3.881 14 C 0.485 3.515 15 O -0.521 6.521 16 N -0.746 5.746 17 C 0.151 3.849 18 C -0.166 4.166 19 C -0.178 4.178 20 C -0.174 4.174 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.393 0.607 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 2.164 -14.776 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.030 3.970 4 N -0.299 5.299 5 C -0.385 4.385 6 H 0.097 0.903 7 C -0.168 4.168 8 N -0.536 5.536 9 Si 0.696 3.304 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.187 1.187 13 C -0.012 4.012 14 C 0.270 3.730 15 O -0.394 6.394 16 N -0.402 5.402 17 C 0.027 3.973 18 C -0.184 4.184 19 C -0.215 4.215 20 C -0.211 4.211 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.601 2.816 -14.095 14.607 hybrid contribution 0.711 -1.161 -0.938 1.653 sum -1.890 1.655 -15.033 15.241 Atomic orbital electron populations 1.21722 0.97090 1.00510 1.01116 1.22144 0.93928 1.00614 1.01883 1.20909 0.83237 0.93299 0.99534 1.43743 1.00718 1.84543 1.00879 1.18782 1.06069 1.23265 0.90353 0.90315 1.25490 0.96717 0.97954 0.96630 1.69907 1.08240 1.39147 1.36321 0.87067 0.78168 0.85012 0.80114 1.21518 1.22601 1.18732 1.21336 0.98515 0.91184 0.90156 1.22900 0.76507 0.94586 0.79033 1.90613 1.49784 1.46154 1.52831 1.46375 1.60859 1.07411 1.25548 1.20750 0.98879 0.84928 0.92782 1.22499 0.99142 0.97896 0.98890 1.23082 0.91365 1.04045 1.03012 1.22936 1.03115 0.95349 0.99748 0.93501 0.93696 0.92983 0.93308 0.91584 0.92723 0.94460 0.92756 0.91334 0.90241 0.77370 0.91795 0.91853 0.87400 0.88448 0.88810 0.88717 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.15 -2.67 6.26 -26.73 -0.17 -2.84 16 3 C 0.16 3.25 5.67 -4.04 -0.02 3.23 16 4 N -0.58 -14.17 1.56 -174.62 -0.27 -14.44 16 5 C -0.26 -7.36 9.90 -15.06 -0.15 -7.50 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 7 C 0.03 0.94 5.29 -17.43 -0.09 0.85 16 8 N -0.90 -27.72 13.97 55.49 0.78 -26.95 16 9 Si 0.87 21.39 25.10 -169.99 -4.27 17.12 16 10 H -0.29 -6.72 6.68 56.52 0.38 -6.34 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.12 2.57 4.99 -5.19 -0.03 2.54 16 14 C 0.49 10.39 7.90 -10.98 -0.09 10.30 16 15 O -0.52 -13.33 16.43 5.55 0.09 -13.24 16 16 N -0.75 -12.26 5.56 -60.29 -0.33 -12.59 16 17 C 0.15 2.21 5.96 -4.05 -0.02 2.18 16 18 C -0.17 -1.81 5.85 -90.62 -0.53 -2.34 16 19 C -0.18 -1.80 10.18 -26.73 -0.27 -2.07 16 20 C -0.17 -1.63 10.25 -26.73 -0.27 -1.90 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.05 1.18 8.04 -51.93 -0.42 0.76 16 27 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.08 1.82 3.38 -51.93 -0.18 1.65 16 31 H 0.39 5.26 8.40 -40.82 -0.34 4.92 16 32 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 34 H 0.11 1.05 8.04 -51.93 -0.42 0.63 16 35 H 0.10 1.05 8.03 -51.93 -0.42 0.63 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -33.48 315.21 -6.94 -40.42 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.40 Total: 4.24 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.28 Total: 0.68 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.17 Total: -53.98 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.27 Total: 17.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.48 -6.94 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.241 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds