Wall clock time and date at job start Sun Mar 29 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47038 * 2 1 4 4 N 1.46501 * 109.47107 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99987 * 269.75326 * 4 3 2 6 6 H 1.07995 * 119.99890 * 322.09382 * 5 4 3 7 7 C 1.38809 * 120.00369 * 142.09680 * 5 4 3 8 8 N 1.31620 * 120.00397 * 156.97129 * 7 5 4 9 9 Si 1.86803 * 119.99815 * 336.96934 * 7 5 4 10 10 H 1.48500 * 109.47288 * 95.70288 * 9 7 5 11 11 H 1.48504 * 109.47201 * 215.70381 * 9 7 5 12 12 H 1.48506 * 109.47203 * 335.70221 * 9 7 5 13 13 C 1.46498 * 120.00070 * 89.74616 * 4 3 2 14 14 C 1.50702 * 109.46936 * 90.00448 * 13 4 3 15 15 O 1.21288 * 120.00218 * 359.97438 * 14 13 4 16 16 N 1.34783 * 119.99970 * 180.02562 * 14 13 4 17 17 C 1.46499 * 119.99830 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47009 * 179.97438 * 17 16 14 19 19 C 1.53006 * 117.49863 * 243.61634 * 18 17 16 20 20 C 1.53003 * 59.99947 * 252.51158 * 19 18 17 21 21 H 1.09000 * 109.46744 * 59.99924 * 1 2 3 22 22 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47056 * 300.00204 * 1 2 3 24 24 H 1.08996 * 109.46789 * 239.99835 * 2 1 3 25 25 H 1.09000 * 109.46744 * 120.00076 * 2 1 3 26 26 H 1.08996 * 109.47465 * 60.00249 * 3 2 1 27 27 H 1.09000 * 109.47415 * 299.99665 * 3 2 1 28 28 H 0.97002 * 119.99785 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47253 * 330.00528 * 13 4 3 30 30 H 1.09003 * 109.47434 * 209.99950 * 13 4 3 31 31 H 0.97001 * 119.99909 * 359.97438 * 16 14 13 32 32 H 1.09007 * 109.46965 * 299.99398 * 17 16 14 33 33 H 1.08996 * 109.47387 * 59.99079 * 17 16 14 34 34 H 1.08997 * 115.55323 * 29.32495 * 18 17 16 35 35 H 1.08995 * 117.49699 * 0.02562 * 19 18 17 36 36 H 1.09002 * 117.49559 * 145.01848 * 19 18 17 37 37 H 1.09007 * 117.49492 * 252.50861 * 20 19 18 38 38 H 1.08994 * 117.49943 * 107.49166 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4474 1.1850 6 1 3.8214 2.0255 2.0193 7 6 5.3587 0.7095 1.3145 8 7 6.2462 1.0373 2.2296 9 14 5.6719 -0.7488 0.1898 10 1 6.5086 -0.3176 -0.9587 11 1 6.3793 -1.8137 0.9454 12 1 4.3765 -1.2746 -0.3112 13 6 4.2370 1.4371 -1.2696 14 6 4.4880 2.8560 -1.7107 15 8 4.0939 3.7808 -1.0322 16 7 5.1497 3.0975 -2.8599 17 6 5.3942 4.4769 -3.2884 18 6 6.1585 4.4713 -4.6138 19 6 7.5650 5.0738 -4.6208 20 6 6.4095 5.8205 -5.2903 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 7.0626 0.5213 2.3202 29 1 3.6476 0.9201 -2.0268 30 1 5.1895 0.9238 -1.1375 31 1 5.4646 2.3579 -3.4028 32 1 4.4419 4.9907 -3.4200 33 1 5.9841 4.9934 -2.5313 34 1 5.9759 3.6114 -5.2582 35 1 7.9458 5.4737 -3.6811 36 1 8.3078 4.6101 -5.2698 37 1 6.3923 5.8481 -6.3798 38 1 6.0300 6.7120 -4.7911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:30 Heat of formation + Delta-G solvation = -18.261445 kcal Electronic energy + Delta-G solvation = -17542.034730 eV Core-core repulsion = 14806.021596 eV Total energy + Delta-G solvation = -2736.013134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65431 -38.55253 -37.61774 -35.01252 -34.59898 -33.16145 -29.85658 -27.57520 -27.16911 -23.88057 -23.25618 -22.04487 -21.91997 -21.16918 -19.09091 -17.95974 -17.35595 -17.23696 -16.37150 -15.91936 -15.67060 -15.49888 -15.03631 -14.69726 -14.47348 -14.35409 -14.08049 -13.92000 -13.27756 -12.82184 -12.47081 -12.40762 -12.35789 -12.28665 -12.16260 -12.03393 -11.59557 -11.41939 -11.36750 -11.13131 -10.85631 -10.57386 -9.96684 -8.81239 -8.20041 -5.59929 1.27345 1.43333 1.55621 1.83252 2.24761 2.41809 2.87701 3.06344 3.34632 3.71513 3.95429 4.04664 4.16039 4.23735 4.28718 4.36490 4.38923 4.50945 4.64639 4.70491 4.73543 4.76917 4.79525 4.93839 5.01514 5.18899 5.20898 5.25457 5.27149 5.42624 5.59190 5.59925 5.91682 6.17591 6.64495 6.94863 7.43670 7.60727 7.99042 9.00557 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.007002 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.029587 B = 3997.805427 C = 4748.979461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.153 3.847 4 N -0.593 5.593 5 C -0.255 4.255 6 H 0.022 0.978 7 C -0.029 4.029 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.261 1.261 11 H -0.306 1.306 12 H -0.239 1.239 13 C 0.113 3.887 14 C 0.482 3.518 15 O -0.575 6.575 16 N -0.725 5.725 17 C 0.151 3.849 18 C -0.171 4.171 19 C -0.182 4.182 20 C -0.161 4.161 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 0.598 -18.704 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.028 3.972 4 N -0.313 5.313 5 C -0.385 4.385 6 H 0.040 0.960 7 C -0.224 4.224 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.187 1.187 11 H -0.235 1.235 12 H -0.162 1.162 13 C -0.016 4.016 14 C 0.267 3.733 15 O -0.453 6.453 16 N -0.380 5.380 17 C 0.027 3.973 18 C -0.189 4.189 19 C -0.219 4.219 20 C -0.198 4.198 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.986 1.240 -18.107 18.393 hybrid contribution 0.808 -0.517 0.300 1.005 sum -2.178 0.723 -17.807 17.955 Atomic orbital electron populations 1.21661 0.94026 1.02086 1.01947 1.21996 0.96568 0.97925 1.01137 1.21019 0.81475 0.95331 0.99348 1.43810 1.02019 1.85030 1.00467 1.18519 1.06476 1.22432 0.91084 0.96043 1.26237 0.96176 1.00756 0.99273 1.70070 1.09142 1.40680 1.39618 0.85842 0.79264 0.79577 0.78349 1.18716 1.23490 1.16199 1.21492 0.98635 0.91592 0.89905 1.22811 0.76595 0.94034 0.79835 1.90601 1.52387 1.47449 1.54853 1.46112 1.58765 1.09085 1.24048 1.20798 0.98908 0.83379 0.94259 1.22408 0.99335 0.99905 0.97260 1.23151 0.91530 1.04211 1.02988 1.23047 1.01628 0.94183 1.00964 0.91715 0.91722 0.93205 0.92108 0.94146 0.94994 0.92612 0.92771 0.86643 0.91090 0.75089 0.92297 0.94307 0.85250 0.89873 0.86991 0.86369 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.14 -4.73 6.26 30.59 0.19 -4.54 16 3 C 0.15 6.32 5.67 86.38 0.49 6.81 16 4 N -0.59 -29.00 1.56 -706.36 -1.10 -30.10 16 5 C -0.25 -15.29 9.90 84.03 0.83 -14.46 16 6 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 7 C -0.03 -1.70 5.29 84.86 0.45 -1.25 16 8 N -0.95 -61.37 13.97 21.65 0.30 -61.06 16 9 Si 0.94 43.90 25.10 68.60 1.72 45.62 16 10 H -0.26 -10.95 6.68 99.48 0.66 -10.28 16 11 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.24 -10.11 7.11 99.48 0.71 -9.40 16 13 C 0.11 4.66 4.99 85.63 0.43 5.09 16 14 C 0.48 20.23 7.90 87.66 0.69 20.92 16 15 O -0.57 -30.10 16.43 -3.05 -0.05 -30.15 16 16 N -0.72 -22.36 5.56 -463.05 -2.57 -24.93 16 17 C 0.15 4.25 5.96 86.38 0.51 4.76 16 18 C -0.17 -3.26 5.85 -10.79 -0.06 -3.33 16 19 C -0.18 -3.25 10.18 30.60 0.31 -2.94 16 20 C -0.16 -2.55 10.25 30.60 0.31 -2.23 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 27 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 28 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.12 3.64 8.07 -2.39 -0.02 3.62 16 30 H 0.07 3.06 3.38 -2.39 -0.01 3.05 16 31 H 0.41 9.56 8.40 -92.71 -0.78 8.78 16 32 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.04 1.29 7.87 -2.39 -0.02 1.27 16 34 H 0.13 1.96 8.04 -2.39 -0.02 1.94 16 35 H 0.08 1.72 8.03 -2.39 -0.02 1.70 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.38 315.21 3.38 -74.00 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.21 Total: 20.74 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.87 Total: 5.89 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -3.37 Total: -116.10 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.72 Total: 45.62 kcal Total: -77.38 3.38 -74.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.735 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds