Wall clock time and date at job start Sun Mar 29 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 N 1.46494 * 109.46660 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00036 * 269.99550 * 4 3 2 6 6 H 1.07998 * 119.99758 * 334.30806 * 5 4 3 7 7 C 1.38813 * 119.99765 * 154.30358 * 5 4 3 8 8 N 1.31617 * 120.00447 * 355.74645 * 7 5 4 9 9 Si 1.86802 * 119.99716 * 175.73753 * 7 5 4 10 10 H 1.48497 * 109.47050 * 60.00330 * 9 7 5 11 11 H 1.48504 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47276 * 300.00554 * 9 7 5 13 13 C 1.46504 * 120.00251 * 90.00525 * 4 3 2 14 14 C 1.50700 * 109.46717 * 275.78415 * 13 4 3 15 15 O 1.21282 * 120.00163 * 0.02562 * 14 13 4 16 16 N 1.34772 * 120.00137 * 179.97438 * 14 13 4 17 17 C 1.46510 * 119.99817 * 0.02562 * 16 14 13 18 18 C 1.46503 * 120.00345 * 179.97438 * 16 14 13 19 19 C 1.53001 * 117.49784 * 188.62567 * 18 16 14 20 20 C 1.52997 * 117.49800 * 120.00382 * 18 16 14 21 21 H 1.08991 * 109.47154 * 299.99938 * 1 2 3 22 22 H 1.08996 * 109.46860 * 60.00123 * 1 2 3 23 23 H 1.08994 * 109.46736 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47274 * 240.00363 * 2 1 3 25 25 H 1.08996 * 109.46860 * 119.99877 * 2 1 3 26 26 H 1.08995 * 109.46736 * 60.00273 * 3 2 1 27 27 H 1.09002 * 109.46940 * 299.99872 * 3 2 1 28 28 H 0.96997 * 120.00184 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47525 * 155.78229 * 13 4 3 30 30 H 1.09005 * 109.47073 * 35.77816 * 13 4 3 31 31 H 1.08994 * 109.47055 * 89.99925 * 17 16 14 32 32 H 1.09005 * 109.46658 * 209.99474 * 17 16 14 33 33 H 1.08995 * 109.46528 * 329.99583 * 17 16 14 34 34 H 1.08993 * 115.54992 * 334.33686 * 18 16 14 35 35 H 1.08997 * 117.50458 * 359.97438 * 19 18 16 36 36 H 1.09000 * 117.49518 * 145.02328 * 19 18 16 37 37 H 1.08998 * 117.50156 * 214.98059 * 20 18 16 38 38 H 1.09003 * 117.50141 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4428 1.1868 6 1 3.7289 1.8485 2.0756 7 6 5.4743 0.9215 1.2469 8 7 6.0036 0.3515 0.1851 9 14 6.4526 1.0292 2.8346 10 1 5.7248 0.3146 3.9138 11 1 7.7855 0.4046 2.6380 12 1 6.6254 2.4545 3.2138 13 6 4.2381 1.4424 -1.2678 14 6 4.3654 0.0288 -1.7742 15 8 3.8901 -0.8882 -1.1385 16 7 5.0065 -0.2164 -2.9341 17 6 5.5801 0.8914 -3.7023 18 6 5.1307 -1.5907 -3.4261 19 6 6.0374 -1.8288 -4.6354 20 6 4.5175 -1.9106 -4.7908 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0276 -0.0005 24 1 1.8935 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 6.9018 -0.0124 0.2270 29 1 5.2313 1.8640 -1.1135 30 1 3.6981 2.0433 -1.9996 31 1 6.6077 1.0623 -3.3815 32 1 5.5674 0.6425 -4.7635 33 1 4.9920 1.7934 -3.5335 34 1 5.0941 -2.3683 -2.6632 35 1 6.5411 -0.9630 -5.0651 36 1 6.5976 -2.7633 -4.6680 37 1 4.0778 -2.8987 -4.9259 38 1 4.0212 -1.0986 -5.3224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:32 Heat of formation + Delta-G solvation = 2.419764 kcal Electronic energy + Delta-G solvation = -18490.810522 eV Core-core repulsion = 15755.694193 eV Total energy + Delta-G solvation = -2735.116329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48700 -38.34547 -36.89313 -34.69005 -34.26563 -32.37888 -28.80932 -27.59752 -27.25884 -24.25511 -23.20547 -22.59646 -21.62392 -19.92227 -18.62528 -17.79518 -17.11106 -16.91763 -16.02713 -15.88519 -15.40621 -15.03783 -14.84589 -14.40178 -13.86138 -13.60721 -13.39089 -13.12208 -13.03593 -12.88865 -12.73824 -12.52366 -12.30481 -12.25216 -12.11552 -11.94967 -11.74811 -11.59723 -11.35858 -11.16773 -10.69121 -10.08661 -8.99561 -8.65045 -7.84464 -5.26989 1.44948 1.47964 1.53031 2.34738 2.44745 2.60958 3.10820 3.36841 3.71135 3.89097 4.08431 4.19882 4.30536 4.34507 4.45119 4.53602 4.70931 4.71454 4.78513 4.80942 4.87467 4.94017 4.97594 5.02707 5.16414 5.22372 5.24464 5.28773 5.35921 5.51088 5.63739 5.81911 6.11038 6.38259 6.91859 7.20349 7.83262 8.10162 8.33114 9.21228 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.010233 C = 0.007431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.888497 B = 2735.695847 C = 3767.079922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.148 3.852 4 N -0.594 5.594 5 C -0.262 4.262 6 H 0.069 0.931 7 C -0.044 4.044 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.272 1.272 13 C 0.174 3.826 14 C 0.531 3.469 15 O -0.571 6.571 16 N -0.607 5.607 17 C 0.086 3.914 18 C 0.056 3.944 19 C -0.167 4.167 20 C -0.182 4.182 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.243 0.757 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 1.463 -10.998 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.022 3.978 4 N -0.314 5.314 5 C -0.392 4.392 6 H 0.086 0.914 7 C -0.239 4.239 8 N -0.563 5.563 9 Si 0.797 3.203 10 H -0.216 1.216 11 H -0.224 1.224 12 H -0.197 1.197 13 C 0.044 3.956 14 C 0.321 3.679 15 O -0.448 6.448 16 N -0.342 5.342 17 C -0.056 4.056 18 C -0.049 4.049 19 C -0.204 4.204 20 C -0.220 4.220 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.698 0.989 -10.608 10.991 hybrid contribution 0.965 -0.588 1.155 1.616 sum -1.733 0.401 -9.454 9.619 Atomic orbital electron populations 1.21687 0.94626 1.01198 1.01976 1.22041 0.95370 0.99468 1.00244 1.21076 0.82927 0.94310 0.99470 1.44034 1.01074 1.84491 1.01773 1.19413 0.97528 1.32907 0.89366 0.91364 1.25701 1.00050 0.98232 0.99929 1.69842 1.15063 1.42343 1.29030 0.85340 0.77212 0.77767 0.79951 1.21638 1.22384 1.19713 1.20516 0.97839 0.90827 0.86394 1.22026 0.74678 0.93771 0.77443 1.90433 1.50018 1.47882 1.56477 1.47535 1.57692 1.05620 1.23359 1.21753 0.98321 0.89120 0.96436 1.21351 1.06959 0.86101 0.90512 1.23386 0.93259 1.04356 0.99441 1.23379 0.95923 1.03509 0.99224 0.92345 0.91779 0.93350 0.93507 0.96587 0.93364 0.92445 0.94718 0.89814 0.92365 0.93770 0.89259 0.90631 0.89872 0.86963 0.87330 0.87829 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.91 71.99 0.71 -3.75 16 2 C -0.13 -5.79 5.39 30.60 0.16 -5.63 16 3 C 0.15 6.42 5.70 86.38 0.49 6.91 16 4 N -0.59 -30.45 2.16 -706.33 -1.53 -31.98 16 5 C -0.26 -14.71 9.66 84.03 0.81 -13.90 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 7 C -0.04 -2.47 5.21 84.86 0.44 -2.03 16 8 N -0.92 -53.42 8.62 21.65 0.19 -53.23 16 9 Si 0.97 46.49 29.56 68.60 2.03 48.52 16 10 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 C 0.17 8.22 3.96 85.63 0.34 8.56 16 14 C 0.53 25.84 5.62 87.66 0.49 26.33 16 15 O -0.57 -32.74 12.57 -3.03 -0.04 -32.78 16 16 N -0.61 -23.80 3.21 -822.59 -2.64 -26.44 16 17 C 0.09 2.51 9.49 127.77 1.21 3.72 16 18 C 0.06 2.01 6.21 44.99 0.28 2.29 16 19 C -0.17 -4.15 9.72 30.59 0.30 -3.85 16 20 C -0.18 -4.72 10.13 30.59 0.31 -4.41 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 2.31 5.74 -2.38 -0.01 2.29 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 27 H 0.06 2.17 7.95 -2.39 -0.02 2.15 16 28 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.08 4.27 6.48 -2.39 -0.02 4.26 16 30 H 0.06 2.33 7.24 -2.38 -0.02 2.31 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.95 6.33 -2.38 -0.02 1.93 16 33 H 0.08 2.06 6.44 -2.39 -0.02 2.04 16 34 H 0.08 3.59 7.67 -2.39 -0.02 3.57 16 35 H 0.11 2.42 6.46 -2.39 -0.02 2.41 16 36 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.10 2.43 8.13 -2.39 -0.02 2.41 16 Total: -1.00 -70.47 302.03 4.58 -65.88 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.02 Total: 15.78 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.56 Total: 14.25 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -3.98 Total: -111.66 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.04 Total: -32.78 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.47 4.58 -65.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds