Wall clock time and date at job start Sun Mar 29 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46962 * 2 1 4 4 N 1.46500 * 109.46754 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99740 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00184 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99699 * 180.02562 * 5 4 3 8 8 H 1.08997 * 109.50156 * 59.93553 * 7 5 4 9 9 C 1.53042 * 109.49725 * 179.97438 * 7 5 4 10 10 C 1.53040 * 109.54174 * 181.31779 * 9 7 5 11 11 C 1.53188 * 109.30921 * 298.63667 * 10 9 7 12 12 N 1.46926 * 108.77817 * 54.63345 * 11 10 9 13 13 C 1.36932 * 120.62923 * 126.37040 * 12 11 10 14 14 H 1.08003 * 120.00058 * 207.50814 * 13 12 11 15 15 C 1.38813 * 120.00216 * 27.51552 * 13 12 11 16 16 N 1.31614 * 120.00042 * 17.83429 * 15 13 12 17 17 Si 1.86803 * 119.99907 * 197.83738 * 15 13 12 18 18 H 1.48501 * 109.47098 * 265.35618 * 17 15 13 19 19 H 1.48493 * 109.47161 * 145.35673 * 17 15 13 20 20 H 1.48505 * 109.47060 * 25.35372 * 17 15 13 21 21 C 1.46930 * 118.73807 * 306.63893 * 12 11 10 22 22 H 1.09003 * 109.47174 * 60.00290 * 1 2 3 23 23 H 1.09002 * 109.46886 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47001 * 300.00262 * 1 2 3 25 25 H 1.09000 * 109.47001 * 239.99738 * 2 1 3 26 26 H 1.08998 * 109.46711 * 119.99816 * 2 1 3 27 27 H 1.09000 * 109.47477 * 60.00029 * 3 2 1 28 28 H 1.08998 * 109.47257 * 299.99481 * 3 2 1 29 29 H 0.96998 * 120.00649 * 0.02562 * 4 3 2 30 30 H 1.09004 * 109.45919 * 61.29371 * 9 7 5 31 31 H 1.09008 * 109.44587 * 301.33137 * 9 7 5 32 32 H 1.09002 * 109.49979 * 178.68243 * 10 9 7 33 33 H 1.08998 * 109.49588 * 58.58319 * 10 9 7 34 34 H 1.09003 * 109.58681 * 294.84505 * 11 10 9 35 35 H 1.09001 * 109.70413 * 174.49134 * 11 10 9 36 36 H 0.97004 * 120.00090 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.58323 * 173.14513 * 21 12 11 38 38 H 1.08997 * 109.58717 * 293.57457 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0011 7 6 5.6859 2.6096 0.0003 8 1 6.0498 2.0945 -0.8888 9 6 6.1968 4.0522 -0.0009 10 6 7.7268 4.0535 -0.0340 11 6 8.2611 3.3523 1.2188 12 7 7.6604 2.0142 1.3044 13 6 8.4494 0.9020 1.4289 14 1 8.1012 -0.0513 1.0594 15 6 9.6967 0.9995 2.0303 16 7 9.9847 2.0398 2.7833 17 14 10.9666 -0.3456 1.7706 18 1 10.8893 -1.3216 2.8872 19 1 12.3238 0.2557 1.7318 20 1 10.6961 -1.0405 0.4863 21 6 6.1973 1.8917 1.2479 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9900 0.6024 0.0006 30 1 5.8526 4.5601 0.9001 31 1 5.8141 4.5720 -0.8794 32 1 8.0894 5.0811 -0.0585 33 1 8.0718 3.5242 -0.9222 34 1 7.9934 3.9303 2.1033 35 1 9.3456 3.2626 1.1554 36 1 10.8564 2.1082 3.2032 37 1 5.9205 0.8385 1.2011 38 1 5.7579 2.3482 2.1347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050998658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:54 Heat of formation + Delta-G solvation = -39.986306 kcal Electronic energy + Delta-G solvation = -17660.212587 eV Core-core repulsion = 14923.257392 eV Total energy + Delta-G solvation = -2736.955194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70603 -37.05291 -35.67055 -33.09994 -32.59348 -30.48166 -30.03699 -26.29224 -25.23810 -23.03692 -22.02420 -21.65632 -20.13529 -18.96456 -17.05043 -16.18763 -15.91774 -15.76058 -14.82081 -14.61582 -13.97929 -13.66839 -13.38522 -13.09427 -12.97494 -12.53802 -12.43544 -12.31356 -12.13202 -11.64135 -11.30533 -11.10902 -11.04545 -10.84686 -10.60871 -10.30176 -10.16497 -9.96669 -9.85214 -9.46349 -9.24924 -8.90702 -8.48523 -6.72482 -5.81864 -3.24505 2.99443 3.35301 3.41685 3.43233 3.45075 4.46181 4.70003 4.80488 5.01755 5.14275 5.33215 5.40512 5.44162 5.47489 5.57289 5.63322 5.70965 5.80940 5.96026 5.96393 6.06010 6.09359 6.28595 6.38445 6.56604 6.62075 6.68734 6.74592 6.88220 6.90815 7.39888 7.66419 7.71756 7.76409 8.40390 8.52563 9.16990 9.80161 10.37036 11.26587 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.005831 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.158825 B = 4800.573805 C = 5608.755847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.736 5.736 5 C 0.523 3.477 6 O -0.550 6.550 7 C -0.125 4.125 8 H 0.092 0.908 9 C -0.087 4.087 10 C -0.143 4.143 11 C 0.167 3.833 12 N -0.589 5.589 13 C -0.257 4.257 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.899 5.899 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.161 3.839 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.402 0.598 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.088 0.912 36 H 0.254 0.746 37 H 0.055 0.945 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 -2.733 -6.123 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.389 5.389 5 C 0.310 3.690 6 O -0.427 6.427 7 C -0.148 4.148 8 H 0.111 0.889 9 C -0.125 4.125 10 C -0.182 4.182 11 C 0.042 3.958 12 N -0.311 5.311 13 C -0.386 4.386 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.543 5.543 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.033 3.967 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -12.881 -1.944 -6.015 14.349 hybrid contribution 0.869 -1.090 -0.075 1.396 sum -12.013 -3.034 -6.090 13.806 Atomic orbital electron populations 1.21676 0.94807 1.01959 1.02199 1.21744 0.96731 0.96142 1.02877 1.21330 0.80416 0.96767 1.02046 1.46109 1.06871 1.09271 1.76637 1.21047 0.90660 0.83013 0.74280 1.90631 1.70813 1.31540 1.49697 1.21897 0.89148 1.00455 1.03304 0.88946 1.21190 0.96091 0.93642 1.01561 1.22212 0.94545 0.99797 1.01668 1.20843 0.99344 0.83994 0.91632 1.44028 0.98777 1.03539 1.84765 1.19159 0.98154 0.88909 1.32412 0.91599 1.25026 0.99854 0.97742 0.96847 1.70053 1.21845 1.30647 1.31796 0.86295 0.81248 0.81306 0.77994 1.21454 1.21513 1.20393 1.20669 0.86811 0.96991 0.92213 0.92504 0.92315 0.92392 0.91339 0.91129 0.91789 0.91925 0.76341 0.92132 0.93020 0.92886 0.92707 0.96288 0.89375 0.93569 0.92641 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.17 6.05 -26.73 -0.16 -1.34 16 3 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 4 N -0.74 -9.90 5.46 -60.29 -0.33 -10.23 16 5 C 0.52 8.96 7.16 -10.98 -0.08 8.88 16 6 O -0.55 -11.07 15.98 5.56 0.09 -10.98 16 7 C -0.12 -2.25 2.66 -91.87 -0.24 -2.49 16 8 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 9 C -0.09 -1.63 4.46 -26.69 -0.12 -1.75 16 10 C -0.14 -2.81 6.08 -26.61 -0.16 -2.98 16 11 C 0.17 4.02 5.32 -3.71 -0.02 4.00 16 12 N -0.59 -14.54 3.00 -172.58 -0.52 -15.06 16 13 C -0.26 -6.87 9.58 -15.06 -0.14 -7.01 16 14 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 15 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 16 N -0.90 -25.86 11.20 55.49 0.62 -25.23 16 17 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.16 3.30 5.63 -3.93 -0.02 3.28 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.40 4.65 8.01 -40.82 -0.33 4.33 16 30 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 31 H 0.05 0.92 8.07 -51.92 -0.42 0.50 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 2.34 6.03 -51.93 -0.31 2.03 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.06 1.05 7.52 -51.93 -0.39 0.66 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -30.86 305.65 -7.75 -38.61 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.49 Total: 0.88 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.69 Total: 1.24 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.23 Total: -50.53 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.86 -7.75 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050998658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.380 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds