Wall clock time and date at job start Sun Mar 29 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46962 * 2 1 4 4 N 1.46500 * 109.46754 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99740 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00184 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99699 * 180.02562 * 5 4 3 8 8 H 1.08997 * 109.50156 * 59.93553 * 7 5 4 9 9 C 1.53042 * 109.49725 * 179.97438 * 7 5 4 10 10 C 1.53040 * 109.54174 * 181.31779 * 9 7 5 11 11 C 1.53188 * 109.30921 * 298.63667 * 10 9 7 12 12 N 1.46926 * 108.77817 * 54.63345 * 11 10 9 13 13 C 1.36932 * 120.62923 * 126.37040 * 12 11 10 14 14 H 1.08003 * 120.00058 * 207.50814 * 13 12 11 15 15 C 1.38813 * 120.00216 * 27.51552 * 13 12 11 16 16 N 1.31614 * 120.00042 * 17.83429 * 15 13 12 17 17 Si 1.86803 * 119.99907 * 197.83738 * 15 13 12 18 18 H 1.48501 * 109.47098 * 265.35618 * 17 15 13 19 19 H 1.48493 * 109.47161 * 145.35673 * 17 15 13 20 20 H 1.48505 * 109.47060 * 25.35372 * 17 15 13 21 21 C 1.46930 * 118.73807 * 306.63893 * 12 11 10 22 22 H 1.09003 * 109.47174 * 60.00290 * 1 2 3 23 23 H 1.09002 * 109.46886 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47001 * 300.00262 * 1 2 3 25 25 H 1.09000 * 109.47001 * 239.99738 * 2 1 3 26 26 H 1.08998 * 109.46711 * 119.99816 * 2 1 3 27 27 H 1.09000 * 109.47477 * 60.00029 * 3 2 1 28 28 H 1.08998 * 109.47257 * 299.99481 * 3 2 1 29 29 H 0.96998 * 120.00649 * 0.02562 * 4 3 2 30 30 H 1.09004 * 109.45919 * 61.29371 * 9 7 5 31 31 H 1.09008 * 109.44587 * 301.33137 * 9 7 5 32 32 H 1.09002 * 109.49979 * 178.68243 * 10 9 7 33 33 H 1.08998 * 109.49588 * 58.58319 * 10 9 7 34 34 H 1.09003 * 109.58681 * 294.84505 * 11 10 9 35 35 H 1.09001 * 109.70413 * 174.49134 * 11 10 9 36 36 H 0.97004 * 120.00090 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.58323 * 173.14513 * 21 12 11 38 38 H 1.08997 * 109.58717 * 293.57457 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0011 7 6 5.6859 2.6096 0.0003 8 1 6.0498 2.0945 -0.8888 9 6 6.1968 4.0522 -0.0009 10 6 7.7268 4.0535 -0.0340 11 6 8.2611 3.3523 1.2188 12 7 7.6604 2.0142 1.3044 13 6 8.4494 0.9020 1.4289 14 1 8.1012 -0.0513 1.0594 15 6 9.6967 0.9995 2.0303 16 7 9.9847 2.0398 2.7833 17 14 10.9666 -0.3456 1.7706 18 1 10.8893 -1.3216 2.8872 19 1 12.3238 0.2557 1.7318 20 1 10.6961 -1.0405 0.4863 21 6 6.1973 1.8917 1.2479 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9900 0.6024 0.0006 30 1 5.8526 4.5601 0.9001 31 1 5.8141 4.5720 -0.8794 32 1 8.0894 5.0811 -0.0585 33 1 8.0718 3.5242 -0.9222 34 1 7.9934 3.9303 2.1033 35 1 9.3456 3.2626 1.1554 36 1 10.8564 2.1082 3.2032 37 1 5.9205 0.8385 1.2011 38 1 5.7579 2.3482 2.1347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050998658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:54 Heat of formation + Delta-G solvation = -59.733684 kcal Electronic energy + Delta-G solvation = -17661.068898 eV Core-core repulsion = 14923.257392 eV Total energy + Delta-G solvation = -2737.811505 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10195 -38.69824 -36.75347 -34.94746 -33.64245 -32.28199 -31.69731 -27.32452 -27.14927 -24.52415 -23.76187 -22.53458 -21.64129 -20.51436 -18.80388 -17.73610 -17.15088 -16.81221 -16.66557 -15.94157 -15.59600 -15.20105 -14.96595 -14.48678 -14.26093 -14.14886 -13.82589 -13.39418 -13.27609 -13.00038 -12.89598 -12.68959 -12.35273 -12.08406 -12.02270 -11.97166 -11.74144 -11.71846 -11.56159 -11.16936 -10.75974 -10.51218 -10.08054 -8.72348 -7.86603 -5.32530 1.49618 1.52107 1.61135 1.62834 2.24886 2.53658 3.29534 3.57139 3.85990 3.91231 4.00317 4.07557 4.12294 4.37093 4.39324 4.49487 4.63175 4.68944 4.74807 4.78866 4.90365 4.92632 5.05415 5.16359 5.16979 5.20189 5.25979 5.27545 5.36179 5.50683 5.55635 5.66636 5.75175 6.37972 6.53907 7.13573 7.24371 7.82978 8.36562 9.20681 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.005831 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.158825 B = 4800.573805 C = 5608.755847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.116 3.884 4 N -0.721 5.721 5 C 0.525 3.475 6 O -0.582 6.582 7 C -0.114 4.114 8 H 0.107 0.893 9 C -0.083 4.083 10 C -0.129 4.129 11 C 0.172 3.828 12 N -0.606 5.606 13 C -0.264 4.264 14 H 0.077 0.923 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.296 1.296 20 H -0.265 1.265 21 C 0.162 3.838 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.413 0.587 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.061 0.939 34 H -0.009 1.009 35 H 0.058 0.942 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.605 -4.282 -7.567 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.373 5.373 5 C 0.312 3.688 6 O -0.462 6.462 7 C -0.137 4.137 8 H 0.125 0.875 9 C -0.121 4.121 10 C -0.168 4.168 11 C 0.047 3.953 12 N -0.329 5.329 13 C -0.394 4.394 14 H 0.095 0.905 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.190 1.190 21 C 0.036 3.964 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.250 0.750 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.010 0.990 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -13.916 -3.540 -7.477 16.190 hybrid contribution 1.105 -0.614 0.407 1.328 sum -12.811 -4.153 -7.071 15.211 Atomic orbital electron populations 1.21682 0.93810 1.02839 1.02257 1.21707 0.97481 0.93875 1.03587 1.21487 0.78939 0.98899 1.01415 1.46033 1.07874 1.08658 1.74718 1.20797 0.90175 0.83525 0.74333 1.90624 1.71156 1.32869 1.51583 1.21707 0.90043 0.99648 1.02314 0.87509 1.21132 0.95196 0.94313 1.01458 1.22036 0.95140 1.00322 0.99303 1.20664 0.97801 0.84210 0.92673 1.44280 1.00428 1.03219 1.84933 1.19584 0.98526 0.89827 1.31450 0.90524 1.25820 1.01815 0.99985 0.96958 1.70216 1.21941 1.32809 1.33258 0.85248 0.78253 0.78609 0.78230 1.21367 1.22213 1.18952 1.20732 0.84524 0.98376 0.92775 0.92262 0.91010 0.92618 0.90234 0.90774 0.92868 0.92164 0.75005 0.93751 0.91449 0.91083 0.92033 0.99045 0.92312 0.94133 0.90802 0.97813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.13 -1.87 6.05 30.59 0.19 -1.68 16 3 C 0.12 2.47 5.67 86.38 0.49 2.96 16 4 N -0.72 -17.85 5.46 -463.06 -2.53 -20.38 16 5 C 0.52 17.16 7.16 87.66 0.63 17.79 16 6 O -0.58 -22.87 15.98 -3.02 -0.05 -22.92 16 7 C -0.11 -3.93 2.66 -11.60 -0.03 -3.96 16 8 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 9 C -0.08 -3.02 4.46 30.62 0.14 -2.89 16 10 C -0.13 -4.97 6.08 30.67 0.19 -4.78 16 11 C 0.17 8.42 5.32 86.36 0.46 8.87 16 12 N -0.61 -29.84 3.00 -699.92 -2.10 -31.95 16 13 C -0.26 -13.97 9.58 84.03 0.81 -13.16 16 14 H 0.08 3.81 7.89 -2.91 -0.02 3.79 16 15 C -0.05 -2.75 4.90 84.86 0.42 -2.34 16 16 N -0.94 -55.05 11.20 21.65 0.24 -54.80 16 17 Si 0.97 43.54 29.59 68.60 2.03 45.57 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C 0.16 6.53 5.63 86.22 0.49 7.02 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.41 8.41 8.01 -92.71 -0.74 7.66 16 30 H 0.04 1.75 8.13 -2.38 -0.02 1.73 16 31 H 0.07 2.27 8.07 -2.38 -0.02 2.25 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.06 3.21 6.03 -2.39 -0.01 3.20 16 36 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.07 2.65 7.52 -2.39 -0.02 2.63 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -66.25 305.65 2.35 -63.90 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.28 Total: 13.85 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.47 Total: 6.73 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.39 Total: -107.13 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.25 2.35 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050998658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.163 kcal (2) G-P(sol) polarization free energy of solvation -66.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds