Wall clock time and date at job start Sun Mar 29 2020 22:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.45359 * 2 1 4 4 C 1.53041 * 109.46271 * 240.02397 * 2 1 3 5 5 C 1.53113 * 109.27567 * 299.16370 * 4 2 1 6 6 C 1.53122 * 109.16304 * 302.34378 * 5 4 2 7 7 C 1.53041 * 109.27498 * 57.65718 * 6 5 4 8 8 H 1.08994 * 109.46157 * 60.83781 * 7 6 5 9 9 C 1.53000 * 109.45981 * 180.80444 * 7 6 5 10 10 N 1.46839 * 109.52240 * 300.82033 * 7 6 5 11 11 C 1.46900 * 110.99960 * 185.83857 * 10 7 6 12 12 C 1.50703 * 109.47395 * 164.11931 * 11 10 7 13 13 O 1.21293 * 119.99871 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00184 * 179.97438 * 12 11 10 15 15 C 1.37091 * 119.99967 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00119 * 180.28070 * 15 14 12 18 18 N 1.31419 * 120.00119 * 359.71396 * 17 15 14 19 19 Si 1.86804 * 120.00334 * 179.72249 * 17 15 14 20 20 H 1.48500 * 109.47044 * 89.99892 * 19 17 15 21 21 H 1.48497 * 109.46877 * 209.99431 * 19 17 15 22 22 H 1.48496 * 109.47046 * 329.99941 * 19 17 15 23 23 H 1.08997 * 109.46626 * 300.03006 * 1 2 3 24 24 H 1.08997 * 109.46909 * 60.02878 * 1 2 3 25 25 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.49919 * 179.22253 * 4 2 1 27 27 H 1.08993 * 109.50113 * 59.10323 * 4 2 1 28 28 H 1.09001 * 109.52182 * 182.44338 * 5 4 2 29 29 H 1.09001 * 109.52868 * 62.25033 * 5 4 2 30 30 H 1.09004 * 109.50335 * 297.71761 * 6 5 4 31 31 H 1.09000 * 109.50198 * 177.59722 * 6 5 4 32 32 H 1.08998 * 109.46876 * 187.47387 * 9 7 6 33 33 H 1.09002 * 109.47131 * 307.47406 * 9 7 6 34 34 H 1.09007 * 109.47034 * 67.47318 * 9 7 6 35 35 H 1.09008 * 109.46754 * 44.12563 * 11 10 7 36 36 H 1.08997 * 109.47603 * 284.12281 * 11 10 7 37 37 H 0.96996 * 119.99706 * 0.02562 * 14 12 11 38 38 H 0.96989 * 120.00312 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 1.5444 -2.1696 -1.2355 6 6 2.0270 -2.8532 0.0469 7 6 1.5174 -2.0703 1.2592 8 1 0.4276 -2.0607 1.2533 9 6 2.0141 -2.7385 2.5429 10 7 2.0193 -0.6917 1.1994 11 6 1.6651 0.0507 2.4165 12 6 2.5033 1.3001 2.5047 13 8 3.3155 1.5478 1.6387 14 7 2.3497 2.1425 3.5455 15 6 3.1119 3.2793 3.6254 16 1 3.8351 3.4999 2.8542 17 6 2.9577 4.1449 4.7013 18 7 2.0772 3.8768 5.6395 19 14 4.0016 5.6899 4.8143 20 1 3.3038 6.8097 4.1330 21 1 4.2186 6.0372 6.2417 22 1 5.3121 5.4508 4.1581 23 1 -0.3632 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 -0.7092 -1.2575 27 1 1.6638 -0.2165 -2.1399 28 1 1.9410 -2.6989 -2.1018 29 1 0.4549 -2.1822 -1.2671 30 1 3.1168 -2.8750 0.0596 31 1 1.6415 -3.8721 0.0833 32 1 1.5455 -2.2632 3.4046 33 1 1.7541 -3.7969 2.5256 34 1 3.0967 -2.6314 2.6128 35 1 1.8511 -0.5740 3.2902 36 1 0.6102 0.3227 2.3822 37 1 1.6999 1.9445 4.2379 38 1 1.9693 4.4812 6.3903 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066531210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:44 Heat of formation + Delta-G solvation = -40.740658 kcal Electronic energy + Delta-G solvation = -18156.592684 eV Core-core repulsion = 15419.604778 eV Total energy + Delta-G solvation = -2736.987906 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80806 -37.63613 -33.94562 -33.36892 -32.77074 -31.12897 -28.49502 -26.69090 -26.38815 -24.36861 -22.33988 -21.14673 -19.18041 -18.30355 -17.69858 -15.99305 -15.51805 -15.46525 -14.70062 -14.52746 -14.03786 -13.79659 -13.35404 -13.20827 -12.77702 -12.55178 -12.22619 -12.00603 -11.91614 -11.52977 -11.41229 -11.35331 -11.32405 -10.99187 -10.61858 -10.40734 -10.35816 -10.16980 -9.99039 -9.86787 -9.39867 -8.33341 -7.89492 -7.66467 -6.35826 -3.76224 3.21376 3.29433 3.35682 3.99463 4.06001 4.29639 4.90559 4.92808 5.03063 5.16500 5.29856 5.33331 5.45523 5.56259 5.57578 5.61785 5.69087 5.73960 5.84903 5.89097 6.00053 6.02310 6.09467 6.16893 6.22899 6.30072 6.34065 6.39068 6.41520 6.55086 6.74039 7.48488 7.60063 7.62147 8.13646 8.69639 9.25041 9.62502 10.15321 10.82248 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040744 B = 0.005726 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.050642 B = 4888.782537 C = 5141.646250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.081 3.919 3 H 0.101 0.899 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.108 4.108 7 C 0.076 3.924 8 H 0.040 0.960 9 C -0.150 4.150 10 N -0.501 5.501 11 C 0.035 3.965 12 C 0.447 3.553 13 O -0.576 6.576 14 N -0.569 5.569 15 C -0.296 4.296 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.904 5.904 19 Si 0.929 3.071 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.391 0.609 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -11.697 -7.744 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.027 4.027 3 H 0.119 0.881 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.146 4.146 7 C -0.032 4.032 8 H 0.057 0.943 9 C -0.208 4.208 10 N -0.226 5.226 11 C -0.096 4.096 12 C 0.233 3.767 13 O -0.460 6.460 14 N -0.206 5.206 15 C -0.426 4.426 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.546 5.546 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.195 1.195 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.224 0.776 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.571 -11.446 -8.182 14.516 hybrid contribution -0.899 0.759 0.730 1.384 sum -4.470 -10.688 -7.452 13.775 Atomic orbital electron populations 1.22544 0.98745 1.01522 1.02036 1.21740 0.91440 0.99943 0.89614 0.88119 1.21540 1.01713 0.94690 0.96578 1.21618 1.00349 0.96473 0.97468 1.21593 1.01804 0.97515 0.93710 1.21629 0.96794 0.89319 0.95463 0.94266 1.21956 1.02651 0.99474 0.96696 1.61734 1.59233 1.00378 1.01214 1.22010 0.97743 0.95835 0.93975 1.19815 0.87094 0.85455 0.84371 1.90496 1.38731 1.76043 1.40690 1.41870 1.36518 1.20567 1.21633 1.19685 1.17426 0.97782 1.07671 0.88012 1.25235 0.97605 0.99696 0.95491 1.69613 1.34872 1.38470 1.11658 0.85878 0.80085 0.81204 0.77240 1.20507 1.20992 1.19459 0.92591 0.92400 0.92496 0.91012 0.92129 0.92368 0.92362 0.91091 0.92154 0.92473 0.92546 0.91476 0.89046 0.93251 0.77617 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 8.21 37.16 0.31 -2.36 16 2 C 0.08 1.33 2.63 -67.72 -0.18 1.15 16 3 H 0.10 2.04 6.33 -51.93 -0.33 1.71 16 4 C -0.11 -1.49 5.61 -26.65 -0.15 -1.64 16 5 C -0.12 -1.41 5.69 -26.61 -0.15 -1.56 16 6 C -0.11 -1.30 5.37 -26.65 -0.14 -1.44 16 7 C 0.08 1.04 2.15 -67.72 -0.15 0.90 16 8 H 0.04 0.52 6.19 -51.93 -0.32 0.20 16 9 C -0.15 -1.89 8.57 37.16 0.32 -1.57 16 10 N -0.50 -8.57 4.07 -220.18 -0.90 -9.47 16 11 C 0.04 0.66 5.14 -4.97 -0.03 0.63 16 12 C 0.45 10.78 7.47 -10.98 -0.08 10.70 16 13 O -0.58 -15.80 14.40 5.55 0.08 -15.72 16 14 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 15 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 16 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 19 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H 0.06 0.84 6.33 -51.93 -0.33 0.51 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.72 4.80 -51.93 -0.25 0.47 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 33 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.56 5.56 -51.92 -0.29 1.27 16 36 H 0.05 0.86 6.02 -51.93 -0.31 0.55 16 37 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -30.46 290.42 -7.01 -37.47 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.72 Total: 9.22 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.49 Total: -3.24 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.23 Total: -48.45 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.46 -7.01 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066531210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.267 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds