Wall clock time and date at job start Sun Mar 29 2020 22:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.45359 * 2 1 4 4 C 1.53041 * 109.46271 * 240.02397 * 2 1 3 5 5 C 1.53113 * 109.27567 * 299.16370 * 4 2 1 6 6 C 1.53122 * 109.16304 * 302.34378 * 5 4 2 7 7 C 1.53041 * 109.27498 * 57.65718 * 6 5 4 8 8 H 1.08994 * 109.46157 * 60.83781 * 7 6 5 9 9 C 1.53000 * 109.45981 * 180.80444 * 7 6 5 10 10 N 1.46839 * 109.52240 * 300.82033 * 7 6 5 11 11 C 1.46900 * 110.99960 * 185.83857 * 10 7 6 12 12 C 1.50703 * 109.47395 * 164.11931 * 11 10 7 13 13 O 1.21293 * 119.99871 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00184 * 179.97438 * 12 11 10 15 15 C 1.37091 * 119.99967 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00119 * 180.28070 * 15 14 12 18 18 N 1.31419 * 120.00119 * 359.71396 * 17 15 14 19 19 Si 1.86804 * 120.00334 * 179.72249 * 17 15 14 20 20 H 1.48500 * 109.47044 * 89.99892 * 19 17 15 21 21 H 1.48497 * 109.46877 * 209.99431 * 19 17 15 22 22 H 1.48496 * 109.47046 * 329.99941 * 19 17 15 23 23 H 1.08997 * 109.46626 * 300.03006 * 1 2 3 24 24 H 1.08997 * 109.46909 * 60.02878 * 1 2 3 25 25 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.49919 * 179.22253 * 4 2 1 27 27 H 1.08993 * 109.50113 * 59.10323 * 4 2 1 28 28 H 1.09001 * 109.52182 * 182.44338 * 5 4 2 29 29 H 1.09001 * 109.52868 * 62.25033 * 5 4 2 30 30 H 1.09004 * 109.50335 * 297.71761 * 6 5 4 31 31 H 1.09000 * 109.50198 * 177.59722 * 6 5 4 32 32 H 1.08998 * 109.46876 * 187.47387 * 9 7 6 33 33 H 1.09002 * 109.47131 * 307.47406 * 9 7 6 34 34 H 1.09007 * 109.47034 * 67.47318 * 9 7 6 35 35 H 1.09008 * 109.46754 * 44.12563 * 11 10 7 36 36 H 1.08997 * 109.47603 * 284.12281 * 11 10 7 37 37 H 0.96996 * 119.99706 * 0.02562 * 14 12 11 38 38 H 0.96989 * 120.00312 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 1.5444 -2.1696 -1.2355 6 6 2.0270 -2.8532 0.0469 7 6 1.5174 -2.0703 1.2592 8 1 0.4276 -2.0607 1.2533 9 6 2.0141 -2.7385 2.5429 10 7 2.0193 -0.6917 1.1994 11 6 1.6651 0.0507 2.4165 12 6 2.5033 1.3001 2.5047 13 8 3.3155 1.5478 1.6387 14 7 2.3497 2.1425 3.5455 15 6 3.1119 3.2793 3.6254 16 1 3.8351 3.4999 2.8542 17 6 2.9577 4.1449 4.7013 18 7 2.0772 3.8768 5.6395 19 14 4.0016 5.6899 4.8143 20 1 3.3038 6.8097 4.1330 21 1 4.2186 6.0372 6.2417 22 1 5.3121 5.4508 4.1581 23 1 -0.3632 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 -0.7092 -1.2575 27 1 1.6638 -0.2165 -2.1399 28 1 1.9410 -2.6989 -2.1018 29 1 0.4549 -2.1822 -1.2671 30 1 3.1168 -2.8750 0.0596 31 1 1.6415 -3.8721 0.0833 32 1 1.5455 -2.2632 3.4046 33 1 1.7541 -3.7969 2.5256 34 1 3.0967 -2.6314 2.6128 35 1 1.8511 -0.5740 3.2902 36 1 0.6102 0.3227 2.3822 37 1 1.6999 1.9445 4.2379 38 1 1.9693 4.4812 6.3903 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066531210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:44 Heat of formation + Delta-G solvation = -61.822171 kcal Electronic energy + Delta-G solvation = -18157.506847 eV Core-core repulsion = 15419.604778 eV Total energy + Delta-G solvation = -2737.902069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13685 -39.45613 -35.95580 -34.60013 -33.93578 -33.20930 -29.76778 -28.20705 -27.44642 -26.23100 -23.54125 -22.28259 -20.98215 -19.93857 -19.33632 -17.72935 -16.88842 -16.76281 -16.49855 -15.90784 -15.60439 -15.30982 -14.92296 -14.61801 -13.94959 -13.91202 -13.51282 -13.39022 -13.24251 -13.05669 -12.93585 -12.64471 -12.47624 -12.42160 -12.41311 -12.12185 -11.73474 -11.51416 -11.42308 -11.07277 -10.97650 -10.23575 -9.98405 -9.01233 -8.45249 -5.93887 1.37788 1.40766 1.53930 2.08657 2.29150 2.80554 3.21183 3.43630 3.85271 3.96490 3.98657 4.17178 4.28498 4.32985 4.46857 4.48910 4.54617 4.56357 4.59793 4.69287 4.83256 4.93927 5.03024 5.09247 5.12223 5.16240 5.17761 5.30539 5.36140 5.41291 5.42001 5.63754 5.96150 6.21819 6.42304 6.63325 7.14964 7.58992 8.15841 8.72392 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040744 B = 0.005726 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.050642 B = 4888.782537 C = 5141.646250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.050 0.950 4 C -0.105 4.105 5 C -0.115 4.115 6 C -0.107 4.107 7 C 0.074 3.926 8 H 0.053 0.947 9 C -0.149 4.149 10 N -0.522 5.522 11 C 0.049 3.951 12 C 0.444 3.556 13 O -0.615 6.615 14 N -0.578 5.578 15 C -0.331 4.331 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.274 1.274 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.394 0.606 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -13.103 -7.965 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 H 0.069 0.931 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.145 4.145 7 C -0.034 4.034 8 H 0.071 0.929 9 C -0.206 4.206 10 N -0.247 5.247 11 C -0.082 4.082 12 C 0.231 3.769 13 O -0.500 6.500 14 N -0.215 5.215 15 C -0.461 4.461 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.564 5.564 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.194 1.194 22 H -0.199 1.199 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.228 0.772 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.769 -12.875 -8.396 16.093 hybrid contribution -0.519 1.170 0.768 1.493 sum -5.288 -11.705 -7.628 14.938 Atomic orbital electron populations 1.22442 0.96557 1.02866 1.01982 1.21659 0.93169 0.97687 0.90631 0.93133 1.21513 1.00255 0.96721 0.95776 1.21600 1.01195 0.94357 0.98072 1.21624 1.00978 0.98824 0.93027 1.21807 0.97543 0.87149 0.96893 0.92920 1.21959 1.01352 1.01223 0.96093 1.61699 1.60496 1.02000 1.00534 1.21847 0.97088 0.93463 0.95788 1.20852 0.86689 0.86458 0.82911 1.90466 1.40515 1.77214 1.41830 1.41939 1.36645 1.20582 1.22371 1.19638 1.18523 0.99759 1.08181 0.90534 1.26022 0.98481 1.02183 0.94610 1.69675 1.35363 1.39460 1.11853 0.84935 0.78150 0.77462 0.77816 1.19626 1.19449 1.19902 0.93901 0.91244 0.90272 0.93405 0.90834 0.90468 0.90847 0.92631 0.89131 0.92648 0.89645 0.93320 0.87345 0.91740 0.77198 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 8.21 71.99 0.59 -4.17 16 2 C 0.08 2.54 2.63 44.94 0.12 2.66 16 3 H 0.05 2.16 6.33 -2.39 -0.02 2.14 16 4 C -0.10 -2.84 5.61 30.65 0.17 -2.67 16 5 C -0.11 -2.31 5.69 30.67 0.17 -2.14 16 6 C -0.11 -2.25 5.37 30.65 0.16 -2.09 16 7 C 0.07 1.83 2.15 44.94 0.10 1.93 16 8 H 0.05 1.20 6.19 -2.39 -0.01 1.19 16 9 C -0.15 -3.40 8.57 71.98 0.62 -2.79 16 10 N -0.52 -17.70 4.07 -850.51 -3.46 -21.16 16 11 C 0.05 1.82 5.14 85.56 0.44 2.26 16 12 C 0.44 22.17 7.47 87.66 0.65 22.82 16 13 O -0.61 -35.46 14.40 -3.07 -0.04 -35.50 16 14 N -0.58 -30.81 5.29 -306.98 -1.62 -32.44 16 15 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 18 N -0.92 -50.84 13.05 21.66 0.28 -50.55 16 19 Si 0.99 43.94 29.55 68.60 2.03 45.97 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H 0.04 1.23 6.33 -2.39 -0.02 1.22 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.73 4.80 -2.39 -0.01 1.72 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.29 6.56 -2.39 -0.02 1.28 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.27 6.44 -2.39 -0.02 1.25 16 33 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 34 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.11 3.64 5.56 -2.38 -0.01 3.63 16 36 H 0.06 2.21 6.02 -2.39 -0.01 2.19 16 37 H 0.39 20.03 7.90 -92.71 -0.73 19.30 16 38 H 0.28 14.26 8.31 -92.72 -0.77 13.49 16 Total: -1.00 -67.78 290.42 1.82 -65.96 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.33 Total: 30.76 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 4.31 Total: -3.03 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.80 Total: -104.15 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.04 Total: -35.50 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.78 1.82 -65.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066531210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.142 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds