Wall clock time and date at job start Sun Mar 29 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50184 * 2 1 4 4 C 1.53046 * 109.49648 * 239.93883 * 2 1 3 5 5 C 1.53106 * 109.50428 * 178.68720 * 4 2 1 6 6 C 1.53192 * 109.33142 * 61.33585 * 5 4 2 7 7 N 1.46922 * 108.77713 * 305.36801 * 6 5 4 8 8 C 1.34784 * 120.63145 * 233.58583 * 7 6 5 9 9 O 1.21273 * 120.00162 * 180.02562 * 8 7 6 10 10 C 1.50705 * 119.99622 * 0.02562 * 8 7 6 11 11 N 1.46502 * 109.46607 * 179.97438 * 10 8 7 12 12 C 1.46494 * 120.00069 * 270.00064 * 11 10 8 13 13 C 1.36934 * 119.99549 * 90.00720 * 11 10 8 14 14 H 1.08003 * 120.00440 * 22.35200 * 13 11 10 15 15 C 1.38811 * 119.99887 * 202.35227 * 13 11 10 16 16 N 1.31623 * 120.00098 * 11.42515 * 15 13 11 17 17 Si 1.86799 * 120.00277 * 191.42600 * 15 13 11 18 18 H 1.48502 * 109.47193 * 89.99404 * 17 15 13 19 19 H 1.48503 * 109.47374 * 209.99947 * 17 15 13 20 20 H 1.48504 * 109.47089 * 329.99864 * 17 15 13 21 21 C 1.46928 * 118.73964 * 53.61129 * 7 6 5 22 22 H 1.09000 * 109.46988 * 299.99705 * 1 2 3 23 23 H 1.08998 * 109.47418 * 60.00073 * 1 2 3 24 24 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.45883 * 298.66976 * 4 2 1 26 26 H 1.09001 * 109.46257 * 58.62975 * 4 2 1 27 27 H 1.08999 * 109.48271 * 301.38119 * 5 4 2 28 28 H 1.08996 * 109.51839 * 181.31633 * 5 4 2 29 29 H 1.09007 * 109.58407 * 185.57819 * 6 5 4 30 30 H 1.08997 * 109.58355 * 65.15781 * 6 5 4 31 31 H 1.08993 * 109.47267 * 300.00256 * 10 8 7 32 32 H 1.09002 * 109.46653 * 60.00615 * 10 8 7 33 33 H 1.09003 * 109.47126 * 94.13128 * 12 11 10 34 34 H 1.09007 * 109.47149 * 214.12384 * 12 11 10 35 35 H 1.08994 * 109.47775 * 334.12510 * 12 11 10 36 36 H 0.96997 * 119.99839 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.58323 * 186.60263 * 21 7 6 38 38 H 1.08996 * 109.70493 * 66.24543 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2487 5 6 3.5715 -0.6942 -1.2655 6 6 4.1059 -1.4255 -0.0300 7 7 3.5046 -0.8281 1.1701 8 6 4.2807 -0.3849 2.1790 9 8 3.7723 0.1058 3.1646 10 6 5.7803 -0.4993 2.0823 11 7 6.3910 0.0491 3.2957 12 6 6.7486 1.4684 3.3586 13 6 6.6277 -0.7650 4.3711 14 1 6.7140 -1.8325 4.2316 15 6 6.7568 -0.2182 5.6404 16 7 6.4326 1.0400 5.8511 17 14 7.3906 -1.2679 7.0496 18 1 8.8698 -1.1580 7.1224 19 1 6.7957 -0.7953 8.3255 20 1 7.0103 -2.6851 6.8211 21 6 2.0413 -0.7235 1.2497 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6971 -1.7571 -1.2356 26 1 1.6576 -0.2242 -2.1391 27 1 3.9160 0.3398 -1.2536 28 1 3.9350 -1.1884 -2.1664 29 1 5.1902 -1.3229 0.0147 30 1 3.8386 -2.4808 -0.0860 31 1 6.0587 -1.5478 1.9769 32 1 6.1320 0.0590 1.2147 33 1 5.9318 2.0291 3.8131 34 1 7.6505 1.5896 3.9588 35 1 6.9298 1.8425 2.3511 36 1 6.5232 1.4221 6.7380 37 1 1.7633 -0.1577 2.1389 38 1 1.6037 -1.7205 1.2995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068555006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:00 Heat of formation + Delta-G solvation = -17.008752 kcal Electronic energy + Delta-G solvation = -18046.171078 eV Core-core repulsion = 15310.212265 eV Total energy + Delta-G solvation = -2735.958813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.57978 -37.18105 -34.94330 -33.50604 -31.59790 -31.13880 -27.82494 -26.29436 -25.73078 -24.67316 -22.14511 -21.52446 -20.02845 -18.42210 -16.71399 -16.39636 -15.52830 -14.89472 -14.60413 -14.43786 -14.30343 -13.62570 -13.34723 -13.14097 -12.89465 -12.54786 -12.37974 -11.95784 -11.81015 -11.56517 -11.11962 -11.06262 -10.80398 -10.76541 -10.64219 -10.54899 -10.33050 -10.27725 -9.94995 -9.81899 -8.91665 -8.41311 -8.06442 -6.68936 -5.62433 -3.09238 3.42642 3.49452 3.51887 3.58237 3.62200 4.56835 4.69563 4.83561 4.86415 5.06647 5.30904 5.40170 5.46241 5.55818 5.59118 5.63388 5.67294 5.73372 5.83490 5.88801 5.91270 6.03450 6.09643 6.12203 6.20673 6.30626 6.35085 6.42444 6.78954 7.08065 7.44861 7.82036 7.91256 8.09254 8.46157 9.17128 9.30975 9.91906 10.39601 11.42397 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039506 B = 0.005854 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.589190 B = 4781.663443 C = 4945.354427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.136 4.136 6 C 0.113 3.887 7 N -0.631 5.631 8 C 0.473 3.527 9 O -0.508 6.508 10 C 0.135 3.865 11 N -0.574 5.574 12 C 0.164 3.836 13 C -0.258 4.258 14 H 0.069 0.931 15 C 0.008 3.992 16 N -0.897 5.897 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.115 3.885 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.049 0.951 35 H -0.005 1.005 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -3.753 -15.759 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.174 4.174 6 C -0.011 4.011 7 N -0.369 5.369 8 C 0.259 3.741 9 O -0.380 6.380 10 C 0.002 3.998 11 N -0.294 5.294 12 C 0.020 3.980 13 C -0.388 4.388 14 H 0.087 0.913 15 C -0.191 4.191 16 N -0.541 5.541 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.009 4.009 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.014 0.986 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.204 -3.334 -14.960 16.935 hybrid contribution -0.021 -0.534 0.741 0.913 sum -7.225 -3.868 -14.219 16.412 Atomic orbital electron populations 1.21760 0.94941 1.01732 1.01744 1.21505 0.95466 1.00247 0.95434 0.91005 1.21566 0.95441 1.00518 0.97385 1.21946 0.96030 1.01551 0.97903 1.21574 0.98626 0.96410 0.84508 1.48718 1.05720 1.63497 1.19010 1.23655 0.92119 0.76646 0.81673 1.90683 1.75007 1.42159 1.30144 1.21026 0.87282 0.99400 0.92077 1.43886 1.65989 1.07244 1.12269 1.20845 0.99901 0.83263 0.93993 1.19155 1.43320 0.90529 0.85748 0.91327 1.25085 1.00271 0.96530 0.97230 1.70104 1.50151 1.12771 1.21078 0.86236 0.78361 0.79693 0.82069 1.21435 1.21723 1.20525 1.21461 0.81556 0.99650 0.98194 0.92460 0.92718 0.92704 0.92032 0.92169 0.91548 0.91144 0.89637 0.92245 0.91065 0.91687 0.94873 0.93275 0.98648 0.93806 0.89526 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 37.16 0.34 -1.09 16 2 C -0.11 -1.28 2.87 -90.50 -0.26 -1.54 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.11 5.17 -26.65 -0.14 -1.25 16 5 C -0.14 -1.38 6.08 -26.58 -0.16 -1.54 16 6 C 0.11 1.38 6.34 -3.71 -0.02 1.36 16 7 N -0.63 -10.54 2.97 -172.77 -0.51 -11.05 16 8 C 0.47 10.38 7.77 -10.98 -0.09 10.29 16 9 O -0.51 -14.00 15.84 5.56 0.09 -13.91 16 10 C 0.13 2.85 4.54 -5.19 -0.02 2.82 16 11 N -0.57 -15.28 2.41 -182.50 -0.44 -15.72 16 12 C 0.16 4.32 9.01 59.84 0.54 4.85 16 13 C -0.26 -7.45 9.67 -15.06 -0.15 -7.60 16 14 H 0.07 1.92 7.85 -52.48 -0.41 1.50 16 15 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 16 N -0.90 -27.81 10.59 55.49 0.59 -27.22 16 17 Si 0.91 22.79 29.57 -169.99 -5.03 17.76 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.11 1.75 5.72 -3.71 -0.02 1.73 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.00 5.93 -51.92 -0.31 0.69 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.38 7.83 -51.93 -0.41 0.98 16 32 H 0.07 1.18 7.41 -51.93 -0.38 0.79 16 33 H 0.03 0.97 7.42 -51.93 -0.39 0.59 16 34 H 0.05 1.35 7.18 -51.93 -0.37 0.97 16 35 H 0.00 -0.11 7.84 -51.93 -0.41 -0.52 16 36 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 37 H 0.09 1.57 7.01 -51.93 -0.36 1.20 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -34.80 302.41 -7.22 -42.02 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.40 Total: -4.62 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.07 Total: 8.19 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.37 Total: -53.99 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.80 -7.22 -42.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068555006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.012 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds