Wall clock time and date at job start Sun Mar 29 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50184 * 2 1 4 4 C 1.53046 * 109.49648 * 239.93883 * 2 1 3 5 5 C 1.53106 * 109.50428 * 178.68720 * 4 2 1 6 6 C 1.53192 * 109.33142 * 61.33585 * 5 4 2 7 7 N 1.46922 * 108.77713 * 305.36801 * 6 5 4 8 8 C 1.34784 * 120.63145 * 233.58583 * 7 6 5 9 9 O 1.21273 * 120.00162 * 180.02562 * 8 7 6 10 10 C 1.50705 * 119.99622 * 0.02562 * 8 7 6 11 11 N 1.46502 * 109.46607 * 179.97438 * 10 8 7 12 12 C 1.46494 * 120.00069 * 270.00064 * 11 10 8 13 13 C 1.36934 * 119.99549 * 90.00720 * 11 10 8 14 14 H 1.08003 * 120.00440 * 22.35200 * 13 11 10 15 15 C 1.38811 * 119.99887 * 202.35227 * 13 11 10 16 16 N 1.31623 * 120.00098 * 11.42515 * 15 13 11 17 17 Si 1.86799 * 120.00277 * 191.42600 * 15 13 11 18 18 H 1.48502 * 109.47193 * 89.99404 * 17 15 13 19 19 H 1.48503 * 109.47374 * 209.99947 * 17 15 13 20 20 H 1.48504 * 109.47089 * 329.99864 * 17 15 13 21 21 C 1.46928 * 118.73964 * 53.61129 * 7 6 5 22 22 H 1.09000 * 109.46988 * 299.99705 * 1 2 3 23 23 H 1.08998 * 109.47418 * 60.00073 * 1 2 3 24 24 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.45883 * 298.66976 * 4 2 1 26 26 H 1.09001 * 109.46257 * 58.62975 * 4 2 1 27 27 H 1.08999 * 109.48271 * 301.38119 * 5 4 2 28 28 H 1.08996 * 109.51839 * 181.31633 * 5 4 2 29 29 H 1.09007 * 109.58407 * 185.57819 * 6 5 4 30 30 H 1.08997 * 109.58355 * 65.15781 * 6 5 4 31 31 H 1.08993 * 109.47267 * 300.00256 * 10 8 7 32 32 H 1.09002 * 109.46653 * 60.00615 * 10 8 7 33 33 H 1.09003 * 109.47126 * 94.13128 * 12 11 10 34 34 H 1.09007 * 109.47149 * 214.12384 * 12 11 10 35 35 H 1.08994 * 109.47775 * 334.12510 * 12 11 10 36 36 H 0.96997 * 119.99839 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.58323 * 186.60263 * 21 7 6 38 38 H 1.08996 * 109.70493 * 66.24543 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2487 5 6 3.5715 -0.6942 -1.2655 6 6 4.1059 -1.4255 -0.0300 7 7 3.5046 -0.8281 1.1701 8 6 4.2807 -0.3849 2.1790 9 8 3.7723 0.1058 3.1646 10 6 5.7803 -0.4993 2.0823 11 7 6.3910 0.0491 3.2957 12 6 6.7486 1.4684 3.3586 13 6 6.6277 -0.7650 4.3711 14 1 6.7140 -1.8325 4.2316 15 6 6.7568 -0.2182 5.6404 16 7 6.4326 1.0400 5.8511 17 14 7.3906 -1.2679 7.0496 18 1 8.8698 -1.1580 7.1224 19 1 6.7957 -0.7953 8.3255 20 1 7.0103 -2.6851 6.8211 21 6 2.0413 -0.7235 1.2497 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6971 -1.7571 -1.2356 26 1 1.6576 -0.2242 -2.1391 27 1 3.9160 0.3398 -1.2536 28 1 3.9350 -1.1884 -2.1664 29 1 5.1902 -1.3229 0.0147 30 1 3.8386 -2.4808 -0.0860 31 1 6.0587 -1.5478 1.9769 32 1 6.1320 0.0590 1.2147 33 1 5.9318 2.0291 3.8131 34 1 7.6505 1.5896 3.9588 35 1 6.9298 1.8425 2.3511 36 1 6.5232 1.4221 6.7380 37 1 1.7633 -0.1577 2.1389 38 1 1.6037 -1.7205 1.2995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068555006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:00 Heat of formation + Delta-G solvation = -40.032889 kcal Electronic energy + Delta-G solvation = -18047.169480 eV Core-core repulsion = 15310.212265 eV Total energy + Delta-G solvation = -2736.957214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99924 -38.60955 -36.94240 -34.74164 -33.24981 -32.62087 -29.46538 -27.94069 -27.32644 -26.04099 -23.45109 -23.11657 -21.16520 -19.84845 -18.78566 -17.94399 -17.14787 -16.46223 -16.22653 -15.67445 -15.35909 -15.25449 -14.91488 -14.68704 -14.25184 -13.89732 -13.73949 -13.42786 -13.06987 -12.98934 -12.80235 -12.62686 -12.52180 -12.23919 -12.06107 -11.96474 -11.88253 -11.72660 -11.54536 -11.25788 -10.83190 -10.48251 -9.44334 -8.80974 -7.81733 -5.31670 1.44024 1.46965 1.55427 1.93388 2.21145 2.51474 3.33859 3.67523 3.74360 3.90074 3.96029 4.13672 4.17630 4.37809 4.51298 4.56021 4.61909 4.66920 4.69571 4.78699 4.86053 4.91247 4.93416 4.97544 5.15877 5.24018 5.28368 5.28491 5.34321 5.52896 5.59276 5.72447 5.79661 6.28338 6.62559 7.12496 7.52495 7.84678 8.25857 9.22466 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039506 B = 0.005854 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.589190 B = 4781.663443 C = 4945.354427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.101 3.899 7 N -0.621 5.621 8 C 0.470 3.530 9 O -0.580 6.580 10 C 0.133 3.867 11 N -0.594 5.594 12 C 0.180 3.820 13 C -0.265 4.265 14 H 0.077 0.923 15 C -0.056 4.056 16 N -0.937 5.937 17 Si 0.974 3.026 18 H -0.276 1.276 19 H -0.300 1.300 20 H -0.268 1.268 21 C 0.111 3.889 22 H 0.043 0.957 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.101 0.899 33 H -0.011 1.011 34 H 0.026 0.974 35 H 0.035 0.965 36 H 0.245 0.755 37 H 0.046 0.954 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -5.795 -18.689 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.070 0.930 4 C -0.145 4.145 5 C -0.169 4.169 6 C -0.020 4.020 7 N -0.357 5.357 8 C 0.257 3.743 9 O -0.458 6.458 10 C 0.002 3.998 11 N -0.315 5.315 12 C 0.035 3.965 13 C -0.395 4.395 14 H 0.094 0.906 15 C -0.251 4.251 16 N -0.583 5.583 17 Si 0.802 3.198 18 H -0.203 1.203 19 H -0.227 1.227 20 H -0.192 1.192 21 C -0.012 4.012 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.008 0.992 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.257 -5.434 -18.000 20.155 hybrid contribution -0.086 0.046 1.475 1.478 sum -7.343 -5.388 -16.525 18.869 Atomic orbital electron populations 1.21739 0.93300 1.02686 1.02079 1.21451 0.96820 0.98894 0.94905 0.93039 1.21578 0.95260 1.01147 0.96537 1.21940 0.96135 1.00968 0.97864 1.21997 0.99173 0.97624 0.83253 1.48610 1.06296 1.61720 1.19101 1.23477 0.92818 0.76265 0.81738 1.90667 1.76132 1.45769 1.33248 1.21247 0.86612 1.00954 0.90992 1.44065 1.67273 1.06940 1.13186 1.20541 0.97161 0.83428 0.95358 1.19567 1.42094 0.91166 0.86650 0.90555 1.25961 1.01295 0.97811 1.00034 1.70322 1.52234 1.14675 1.21083 0.85167 0.78027 0.78398 0.78208 1.20263 1.22677 1.19217 1.21585 0.80682 1.00415 0.98492 0.93740 0.90841 0.91412 0.90642 0.90158 0.92638 0.87804 0.88753 0.90035 0.88789 0.88089 0.99240 0.95482 0.94626 0.94570 0.93546 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.20 71.98 0.66 -1.85 16 2 C -0.10 -2.25 2.87 -10.72 -0.03 -2.28 16 3 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.11 -1.70 5.17 30.65 0.16 -1.54 16 5 C -0.13 -2.11 6.08 30.69 0.19 -1.92 16 6 C 0.10 2.12 6.34 86.36 0.55 2.67 16 7 N -0.62 -19.98 2.97 -818.91 -2.43 -22.42 16 8 C 0.47 20.66 7.77 87.66 0.68 21.34 16 9 O -0.58 -33.41 15.84 -3.01 -0.05 -33.45 16 10 C 0.13 5.42 4.54 85.63 0.39 5.81 16 11 N -0.59 -31.76 2.41 -731.31 -1.76 -33.53 16 12 C 0.18 9.67 9.01 127.77 1.15 10.82 16 13 C -0.26 -15.40 9.67 84.03 0.81 -14.59 16 14 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 15 C -0.06 -3.37 5.13 84.86 0.44 -2.94 16 16 N -0.94 -60.50 10.59 21.65 0.23 -60.27 16 17 Si 0.97 47.70 29.57 68.60 2.03 49.72 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C 0.11 3.34 5.72 86.36 0.49 3.83 16 22 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.82 5.93 -2.38 -0.01 1.81 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 3.40 7.83 -2.39 -0.02 3.38 16 32 H 0.10 3.36 7.41 -2.39 -0.02 3.34 16 33 H -0.01 -0.67 7.42 -2.39 -0.02 -0.69 16 34 H 0.03 1.52 7.18 -2.38 -0.02 1.50 16 35 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 36 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.05 1.77 7.01 -2.39 -0.02 1.75 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -80.19 302.41 4.51 -75.68 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.01 Total: 4.92 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 5.49 Total: 19.34 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -3.97 Total: -116.21 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.45 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal Total: -80.19 4.51 -75.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068555006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.647 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds