Wall clock time and date at job start Sun Mar 29 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.01619 * 2 1 4 4 C 1.54268 * 110.06990 * 238.58439 * 2 1 3 5 5 C 1.54894 * 104.18953 * 217.08006 * 4 2 1 6 6 C 1.54889 * 102.74901 * 37.94491 * 5 4 2 7 7 C 1.53872 * 110.03096 * 121.39108 * 2 1 3 8 8 H 1.08998 * 110.03227 * 238.66450 * 7 2 1 9 9 N 1.46898 * 110.03492 * 0.04787 * 7 2 1 10 10 C 1.46894 * 111.00062 * 204.99954 * 9 7 2 11 11 C 1.50703 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99573 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99983 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99737 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46825 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 H 1.09006 * 109.47136 * 298.60829 * 1 2 3 24 24 H 1.08997 * 109.47290 * 58.60738 * 1 2 3 25 25 H 1.09000 * 109.47178 * 178.60796 * 1 2 3 26 26 H 1.08996 * 110.48954 * 335.75997 * 4 2 1 27 27 H 1.09008 * 110.48467 * 98.27759 * 4 2 1 28 28 H 1.09003 * 110.75125 * 156.26233 * 5 4 2 29 29 H 1.09000 * 110.75898 * 279.44050 * 5 4 2 30 30 H 1.09000 * 110.48201 * 203.37350 * 6 5 4 31 31 H 1.09007 * 110.48555 * 80.73414 * 6 5 4 32 32 H 1.00902 * 110.99361 * 81.04404 * 9 7 2 33 33 H 1.08996 * 109.47712 * 59.99947 * 10 9 7 34 34 H 1.09008 * 109.47075 * 299.99801 * 10 9 7 35 35 H 0.96997 * 120.00373 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.46958 * 60.00450 * 14 13 11 37 37 H 1.08997 * 109.47731 * 300.00126 * 14 13 11 38 38 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0594 -0.7553 -1.2366 5 6 3.3150 -1.4996 -0.7182 6 6 2.8884 -1.9396 0.7044 7 6 2.0570 -0.7530 1.2340 8 1 2.6853 -0.0941 1.8334 9 7 0.9328 -1.2465 2.0406 10 6 1.3295 -1.4239 3.4438 11 6 0.1533 -1.9305 4.2381 12 8 -0.9107 -2.1243 3.6894 13 7 0.2839 -2.1683 5.5583 14 6 -0.8597 -2.6603 6.3305 15 6 -0.4527 -2.8424 7.7701 16 1 0.5567 -2.6140 8.0790 17 6 -1.3690 -3.3005 8.6929 18 7 -1.0140 -3.4590 9.9493 19 14 -3.1147 -3.6962 8.1586 20 1 -3.1945 -5.1196 7.7426 21 1 -3.4925 -2.8249 7.0170 22 1 -4.0450 -3.4588 9.2915 23 1 -0.3634 0.4921 0.9022 24 1 -0.3634 0.5353 -0.8772 25 1 -0.3633 -1.0274 -0.0250 26 1 1.3159 -1.4663 -1.5966 27 1 2.3284 -0.0534 -2.0260 28 1 3.5347 -2.3666 -1.3412 29 1 4.1726 -0.8281 -0.6770 30 1 3.7646 -2.1020 1.3321 31 1 2.2788 -2.8420 0.6578 32 1 0.5625 -2.1037 1.6583 33 1 1.6594 -0.4685 3.8517 34 1 2.1448 -2.1450 3.5025 35 1 1.1348 -2.0130 5.9972 36 1 -1.1898 -3.6156 5.9223 37 1 -1.6749 -1.9391 6.2723 38 1 -1.6585 -3.7816 10.5984 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070831000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:02 Heat of formation + Delta-G solvation = -74.243926 kcal Electronic energy + Delta-G solvation = -17139.910711 eV Core-core repulsion = 14401.469994 eV Total energy + Delta-G solvation = -2738.440716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70650 -39.64744 -36.18922 -35.06459 -34.39076 -32.02290 -30.55608 -28.77321 -26.31750 -25.47703 -23.77734 -21.70078 -21.49796 -20.12806 -19.11820 -17.87322 -17.28342 -16.80001 -16.67614 -16.05231 -15.77622 -15.21249 -14.78042 -14.60332 -14.47831 -14.32510 -13.90531 -13.81072 -13.14355 -13.08011 -12.94293 -12.71631 -12.49663 -11.94183 -11.88914 -11.67414 -11.64914 -11.54202 -11.42284 -11.27891 -10.92559 -10.73931 -9.91838 -9.25195 -8.40861 -6.47780 1.31946 1.34427 1.47240 1.76496 2.27340 2.38056 2.94531 3.32441 3.70097 3.77713 3.95341 4.06900 4.36508 4.41318 4.47820 4.55165 4.59485 4.71200 4.78184 4.78988 4.83677 4.98988 5.02747 5.08594 5.11633 5.25237 5.26069 5.32277 5.43043 5.52757 5.53474 5.66761 6.03872 6.14692 6.38735 6.53565 6.88280 7.15587 7.44694 8.73882 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052099 B = 0.004155 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.307488 B = 6736.468477 C = 7033.502178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.153 4.153 7 C 0.085 3.915 8 H 0.089 0.911 9 N -0.674 5.674 10 C 0.053 3.947 11 C 0.497 3.503 12 O -0.587 6.587 13 N -0.708 5.708 14 C 0.233 3.767 15 C -0.547 4.547 16 H 0.060 0.940 17 C 0.026 3.974 18 N -0.931 5.931 19 Si 0.938 3.062 20 H -0.265 1.265 21 H -0.262 1.262 22 H -0.273 1.273 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.344 0.656 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 5.594 -20.944 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.155 4.155 6 C -0.193 4.193 7 C -0.025 4.025 8 H 0.107 0.893 9 N -0.306 5.306 10 C -0.079 4.079 11 C 0.284 3.716 12 O -0.467 6.467 13 N -0.359 5.359 14 C 0.109 3.891 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.174 4.174 18 N -0.570 5.570 19 Si 0.762 3.238 20 H -0.189 1.189 21 H -0.187 1.187 22 H -0.198 1.198 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.593 6.027 -21.009 23.485 hybrid contribution -0.051 -1.104 0.638 1.276 sum 8.542 4.923 -20.371 22.632 Atomic orbital electron populations 1.21460 0.95101 1.00885 1.00243 1.21781 0.95934 0.99212 0.93630 0.90350 1.22468 0.97207 0.99041 0.97041 1.22399 0.97819 1.00201 0.95128 1.23118 1.00275 0.97891 0.97981 1.22380 0.89765 0.96073 0.94240 0.89326 1.60383 1.32768 1.37250 1.00213 1.21797 0.93226 1.03043 0.89803 1.21394 0.90715 0.77175 0.82313 1.90630 1.30938 1.54199 1.70962 1.46029 1.15408 1.65901 1.08522 1.19057 0.86379 0.93570 0.90109 1.21307 0.99292 1.45832 0.92038 0.92200 1.25607 1.02869 0.94317 0.94634 1.69981 1.37187 1.46615 1.03217 0.85850 0.79726 0.79680 0.78579 1.18948 1.18665 1.19755 0.93644 0.93387 0.94032 0.92186 0.90692 0.91210 0.90475 0.90901 0.92325 0.83616 0.86443 0.90196 0.75592 0.97200 0.97236 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.06 71.98 0.58 -1.97 16 2 C -0.09 -1.49 3.50 -10.07 -0.04 -1.53 16 3 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.12 -1.71 6.36 31.67 0.20 -1.51 16 5 C -0.12 -1.52 6.91 31.89 0.22 -1.30 16 6 C -0.15 -2.38 6.45 31.67 0.20 -2.18 16 7 C 0.09 1.53 3.21 45.64 0.15 1.68 16 8 H 0.09 1.45 7.81 -2.39 -0.02 1.43 16 9 N -0.67 -16.43 4.06 -491.85 -2.00 -18.42 16 10 C 0.05 1.32 6.00 85.56 0.51 1.83 16 11 C 0.50 18.31 7.87 87.66 0.69 19.00 16 12 O -0.59 -26.65 16.20 -3.02 -0.05 -26.70 16 13 N -0.71 -28.17 5.55 -466.79 -2.59 -30.76 16 14 C 0.23 11.55 4.50 85.63 0.38 11.93 16 15 C -0.55 -30.38 9.83 25.60 0.25 -30.13 16 16 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 17 C 0.03 1.48 5.47 84.65 0.46 1.94 16 18 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 19 Si 0.94 44.52 27.47 68.60 1.88 46.40 16 20 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H 0.04 1.17 7.81 -2.38 -0.02 1.15 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.04 0.98 7.49 -2.39 -0.02 0.96 16 26 H 0.06 0.94 7.84 -2.39 -0.02 0.92 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.03 7.56 -2.38 -0.02 1.01 16 32 H 0.34 9.16 7.37 -89.69 -0.66 8.50 16 33 H 0.12 2.48 8.07 -2.39 -0.02 2.46 16 34 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.41 14.04 8.32 -92.71 -0.77 13.27 16 36 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 37 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -67.02 306.32 0.72 -66.30 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.44 Total: 20.95 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 3.62 Total: -2.22 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -4.29 Total: -104.72 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -67.02 0.72 -66.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070831000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.947 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds