Wall clock time and date at job start Sun Mar 29 2020 22:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.02275 * 2 1 4 4 C 1.54264 * 110.03028 * 121.45044 * 2 1 3 5 5 C 1.54892 * 104.19830 * 142.89158 * 4 2 1 6 6 C 1.54890 * 102.74625 * 322.05480 * 5 4 2 7 7 C 1.53880 * 110.02824 * 238.61050 * 2 1 3 8 8 H 1.09001 * 110.03619 * 0.05289 * 7 2 1 9 9 N 1.46901 * 110.02937 * 121.43533 * 7 2 1 10 10 C 1.46896 * 110.99831 * 204.99758 * 9 7 2 11 11 C 1.50709 * 109.47179 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99753 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99700 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47128 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 1.08994 * 109.47258 * 181.38442 * 1 2 3 24 24 H 1.08996 * 109.46900 * 301.39059 * 1 2 3 25 25 H 1.09008 * 109.46823 * 61.38413 * 1 2 3 26 26 H 1.09007 * 110.48206 * 261.57150 * 4 2 1 27 27 H 1.08997 * 110.48818 * 24.07645 * 4 2 1 28 28 H 1.08999 * 110.75635 * 80.36663 * 5 4 2 29 29 H 1.08996 * 110.75470 * 203.74050 * 5 4 2 30 30 H 1.08999 * 110.48709 * 279.26502 * 6 5 4 31 31 H 1.08998 * 110.48281 * 156.61778 * 6 5 4 32 32 H 1.00897 * 111.00079 * 328.95143 * 9 7 2 33 33 H 1.09000 * 109.47274 * 60.00200 * 10 9 7 34 34 H 1.08997 * 109.47798 * 299.99999 * 10 9 7 35 35 H 0.96998 * 120.00160 * 359.97438 * 13 11 10 36 36 H 1.09001 * 109.47786 * 60.00101 * 14 13 11 37 37 H 1.09006 * 109.47401 * 299.99686 * 14 13 11 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0240 0.0000 4 6 2.0584 -0.7562 1.2364 5 6 3.3136 -1.5013 0.7183 6 6 2.8873 -1.9404 -0.7046 7 6 2.0570 -0.7530 -1.2342 8 1 1.2228 -1.1176 -1.8335 9 7 2.9056 0.1344 -2.0406 10 6 2.9365 -0.2989 -3.4438 11 6 3.8142 0.6336 -4.2384 12 8 4.3607 1.5669 -3.6895 13 7 3.9920 0.4303 -5.5589 14 6 4.8456 1.3364 -6.3310 15 6 4.8772 0.8920 -7.7707 16 1 4.3177 0.0213 -8.0794 17 6 5.6204 1.5968 -8.6936 18 7 6.3022 2.6567 -8.3175 19 14 5.6601 1.0454 -10.4779 20 1 6.5244 1.9647 -11.2610 21 1 6.2038 -0.3342 -10.5578 22 1 4.2832 1.0679 -11.0337 23 1 -0.3633 -1.0273 0.0248 24 1 -0.3633 0.5353 0.8772 25 1 -0.3633 0.4922 -0.9022 26 1 2.3297 -0.0547 2.0254 27 1 1.3132 -1.4652 1.5972 28 1 4.1709 -0.8296 0.6746 29 1 3.5324 -2.3687 1.3410 30 1 2.2769 -2.8423 -0.6586 31 1 3.7636 -2.1032 -1.3321 32 1 2.6008 1.0933 -1.9649 33 1 1.9258 -0.2817 -3.8518 34 1 3.3348 -1.3118 -3.5028 35 1 3.5552 -0.3164 -5.9977 36 1 5.8565 1.3189 -5.9235 37 1 4.4475 2.3495 -6.2718 38 1 6.2819 2.9428 -7.3909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070831004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:04 Heat of formation + Delta-G solvation = -64.012085 kcal Electronic energy + Delta-G solvation = -17012.656365 eV Core-core repulsion = 14274.659334 eV Total energy + Delta-G solvation = -2737.997030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.39508 -38.46729 -34.57396 -33.97539 -32.40504 -31.39242 -28.59416 -27.00040 -25.66825 -23.93707 -22.46401 -20.68897 -19.86633 -19.52615 -17.49074 -16.66527 -15.87531 -15.35585 -15.23572 -14.79656 -14.04317 -13.95275 -13.75136 -13.54372 -13.17537 -12.85219 -12.52261 -12.27420 -12.16247 -11.71938 -11.29366 -11.24308 -11.07028 -11.01461 -10.85520 -10.77758 -10.72964 -10.68669 -10.16301 -9.17605 -8.78328 -8.68461 -8.36082 -7.98659 -6.51774 -4.25357 3.30097 3.37284 3.39375 3.58324 3.76081 4.36291 4.39399 4.45325 4.52010 4.77714 5.11400 5.20755 5.27017 5.28591 5.31668 5.36529 5.39703 5.45635 5.56283 5.58736 5.68939 5.75011 5.82634 5.92120 5.95502 6.05686 6.14764 6.30053 6.93754 7.06858 7.22554 7.32986 7.41683 7.66598 8.26525 8.47450 8.71576 9.00254 9.48674 10.88412 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.055327 B = 0.003742 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.956728 B = 7480.921755 C = 7488.815352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.115 4.115 7 C 0.085 3.915 8 H 0.046 0.954 9 N -0.665 5.665 10 C 0.041 3.959 11 C 0.497 3.503 12 O -0.545 6.545 13 N -0.710 5.710 14 C 0.241 3.759 15 C -0.624 4.624 16 H 0.057 0.943 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 1.076 2.924 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.287 1.287 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.350 0.650 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.392 0.608 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 -9.598 15.269 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.025 4.025 8 H 0.064 0.936 9 N -0.298 5.298 10 C -0.092 4.092 11 C 0.281 3.719 12 O -0.423 6.423 13 N -0.359 5.359 14 C 0.119 3.881 15 C -0.662 4.662 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.536 5.536 19 Si 0.903 3.097 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.213 1.213 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.225 0.775 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.871 -8.848 14.312 19.508 hybrid contribution -1.764 -0.497 0.936 2.058 sum -11.635 -9.344 15.248 21.336 Atomic orbital electron populations 1.21896 0.94967 1.01728 1.01689 1.21979 0.95293 1.00118 0.94538 0.90187 1.22389 0.97477 0.98792 0.96759 1.22430 0.97922 0.99620 0.95730 1.22404 0.99896 0.96273 0.96796 1.22287 0.93105 0.93538 0.93530 0.93579 1.60248 1.55844 1.06460 1.07263 1.21869 0.98445 0.99697 0.89177 1.20447 0.82584 0.86015 0.82865 1.90655 1.49505 1.31994 1.70143 1.46265 1.49835 1.31985 1.07840 1.19149 0.89292 0.89058 0.90592 1.22070 1.34773 1.16164 0.93190 0.92502 1.25889 0.92674 0.94017 1.05799 1.70760 1.38854 1.23386 1.20626 0.83444 0.76431 0.75732 0.74063 1.20547 1.21267 1.21308 0.92593 0.92520 0.92836 0.91829 0.91787 0.90918 0.92092 0.91976 0.90856 0.82984 0.92918 0.88641 0.77534 0.96543 0.96638 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.85 37.16 0.33 -0.85 16 2 C -0.10 -0.96 3.18 -89.50 -0.28 -1.25 16 3 H 0.08 0.85 7.47 -51.93 -0.39 0.46 16 4 C -0.12 -1.02 6.36 -25.07 -0.16 -1.18 16 5 C -0.12 -1.16 6.91 -24.74 -0.17 -1.33 16 6 C -0.12 -1.20 6.50 -25.07 -0.16 -1.36 16 7 C 0.09 0.93 2.90 -66.59 -0.19 0.74 16 8 H 0.05 0.48 7.34 -51.93 -0.38 0.10 16 9 N -0.66 -9.29 5.88 -106.80 -0.63 -9.92 16 10 C 0.04 0.59 5.99 -4.97 -0.03 0.56 16 11 C 0.50 10.02 7.87 -10.98 -0.09 9.94 16 12 O -0.54 -13.25 16.20 5.56 0.09 -13.16 16 13 N -0.71 -15.22 5.55 -61.47 -0.34 -15.56 16 14 C 0.24 6.45 4.74 -5.19 -0.02 6.42 16 15 C -0.62 -17.32 9.28 -34.44 -0.32 -17.64 16 16 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 18 N -0.90 -27.55 13.65 55.43 0.76 -26.80 16 19 Si 1.08 24.51 29.90 -169.99 -5.08 19.42 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 32 H 0.35 5.10 7.71 -39.29 -0.30 4.80 16 33 H 0.05 0.66 8.07 -51.93 -0.42 0.25 16 34 H 0.10 1.25 7.95 -51.93 -0.41 0.84 16 35 H 0.39 7.24 8.32 -40.82 -0.34 6.90 16 36 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 37 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 38 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -32.30 310.89 -8.06 -40.36 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.34 Total: 6.40 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.20 Total: -5.43 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.21 Total: -52.28 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.30 -8.06 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070831004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.649 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds