Wall clock time and date at job start Sun Mar 29 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46860 * 2 1 4 4 N 1.46895 * 109.47156 * 120.00391 * 2 1 3 5 5 C 1.46895 * 111.00350 * 56.04843 * 4 2 1 6 6 C 1.46907 * 110.99881 * 180.02562 * 4 2 1 7 7 C 1.50695 * 109.47223 * 169.99731 * 6 4 2 8 8 O 1.21295 * 119.99779 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00350 * 179.97438 * 7 6 4 10 10 C 1.37095 * 120.00457 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99768 * 222.72603 * 10 9 7 12 12 C 1.38947 * 119.99929 * 42.71579 * 10 9 7 13 13 N 1.31412 * 119.99747 * 23.18497 * 12 10 9 14 14 Si 1.86795 * 120.00007 * 203.17997 * 12 10 9 15 15 H 1.48496 * 109.47347 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.47208 * 300.00593 * 14 12 10 17 17 H 1.48504 * 109.47108 * 60.00600 * 14 12 10 18 18 C 1.46508 * 119.99381 * 0.02562 * 9 7 6 19 19 C 1.53002 * 117.49453 * 189.35101 * 18 9 7 20 20 C 1.53004 * 60.00148 * 252.51359 * 19 18 9 21 21 H 1.08999 * 109.46769 * 299.99616 * 1 2 3 22 22 H 1.09004 * 109.47230 * 60.00008 * 1 2 3 23 23 H 1.09000 * 109.46835 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47032 * 240.00753 * 2 1 3 25 25 H 1.09006 * 109.46791 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46954 * 300.00430 * 3 2 1 27 27 H 1.09004 * 109.46683 * 60.00540 * 3 2 1 28 28 H 1.08996 * 109.47346 * 183.95350 * 5 4 2 29 29 H 1.09005 * 109.46819 * 303.95026 * 5 4 2 30 30 H 1.09002 * 109.47343 * 63.95020 * 5 4 2 31 31 H 1.09001 * 109.47259 * 49.99599 * 6 4 2 32 32 H 1.08998 * 109.46801 * 290.00031 * 6 4 2 33 33 H 0.96997 * 120.00544 * 6.06304 * 13 12 10 34 34 H 1.08999 * 115.55190 * 335.06064 * 18 9 7 35 35 H 1.08996 * 117.49764 * 0.02562 * 19 18 9 36 36 H 1.08999 * 117.49659 * 145.02224 * 19 18 9 37 37 H 1.08998 * 117.50051 * 252.51877 * 20 19 18 38 38 H 1.09000 * 117.51908 * 107.48332 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4731 -2.0536 1.2815 6 6 3.4882 -0.7116 1.2336 7 6 3.9530 -1.2040 2.5798 8 8 3.1408 -1.5096 3.4273 9 7 5.2711 -1.3060 2.8419 10 6 5.6940 -1.7544 4.0664 11 1 6.5170 -1.2651 4.5660 12 6 5.0635 -2.8384 4.6649 13 7 4.4064 -3.7054 3.9277 14 14 5.1502 -3.0633 6.5172 15 1 4.4027 -4.2871 6.9028 16 1 6.5692 -3.1988 6.9336 17 1 4.5480 -1.8831 7.1879 18 6 6.2521 -0.9374 1.8180 19 6 7.7187 -1.2783 2.0897 20 6 7.2455 0.1751 2.1594 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5137 -0.8901 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.7950 -2.5188 2.2131 29 1 0.3843 -2.0100 1.2544 30 1 1.8343 -2.6417 0.4378 31 1 3.8687 0.2957 1.0639 32 1 3.8612 -1.3768 0.4547 33 1 4.4343 -3.6393 2.9604 34 1 5.9027 -1.0014 0.7875 35 1 7.9536 -1.7771 3.0299 36 1 8.3345 -1.5668 1.2378 37 1 7.5499 0.8427 1.3534 38 1 7.1689 0.6330 3.1456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070944370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:10 Heat of formation + Delta-G solvation = 12.617087 kcal Electronic energy + Delta-G solvation = -18413.544285 eV Core-core repulsion = 15678.870144 eV Total energy + Delta-G solvation = -2734.674140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.10534 -37.51801 -35.95559 -32.96428 -31.63307 -30.81113 -28.59770 -26.30451 -24.68473 -23.45904 -21.76239 -21.28096 -19.94098 -19.04661 -16.75011 -16.42311 -15.78749 -14.93143 -14.60878 -14.05440 -13.92709 -13.69694 -13.61200 -13.12152 -12.57403 -12.33970 -12.06102 -11.89411 -11.66457 -11.43433 -11.23996 -10.97763 -10.89270 -10.70543 -10.60362 -10.31468 -10.16526 -10.06111 -9.84376 -9.65708 -8.62299 -8.13207 -7.63720 -7.27361 -6.32934 -3.83898 3.44284 3.55853 3.69695 3.97288 4.10093 4.47073 4.69694 4.85897 5.11104 5.12898 5.35080 5.46332 5.48645 5.54167 5.69027 5.70589 5.72902 5.81083 5.91297 5.95365 5.97937 6.06006 6.09918 6.16528 6.19494 6.31585 6.36198 6.43803 6.67065 6.82578 6.88586 7.44351 7.60184 7.93964 8.43322 8.88665 9.24822 9.60951 10.17271 10.94361 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.008803 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.527207 B = 3179.942804 C = 4049.099726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.146 4.146 4 N -0.515 5.515 5 C 0.019 3.981 6 C 0.041 3.959 7 C 0.464 3.536 8 O -0.517 6.517 9 N -0.435 5.435 10 C -0.428 4.428 11 H 0.069 0.931 12 C 0.041 3.959 13 N -0.845 5.845 14 Si 1.075 2.925 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.286 1.286 18 C 0.068 3.932 19 C -0.175 4.175 20 C -0.202 4.202 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.010 0.990 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.268 0.732 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 6.347 -8.937 10.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.204 4.204 4 N -0.240 5.240 5 C -0.129 4.129 6 C -0.090 4.090 7 C 0.251 3.749 8 O -0.394 6.394 9 N -0.158 5.158 10 C -0.554 4.554 11 H 0.086 0.914 12 C -0.172 4.172 13 N -0.476 5.476 14 Si 0.902 3.098 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.038 4.038 19 C -0.213 4.213 20 C -0.241 4.241 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.026 5.486 -6.844 9.002 hybrid contribution 1.066 0.595 -2.267 2.575 sum -0.960 6.081 -9.111 10.996 Atomic orbital electron populations 1.21884 0.94544 1.01977 1.01774 1.21638 0.95630 0.95047 0.91191 1.21903 1.01064 0.95554 1.01840 1.61685 1.06787 1.18250 1.37255 1.22611 0.99481 0.88162 1.02631 1.22067 0.88549 1.01321 0.97102 1.19948 0.83010 0.83014 0.88881 1.90574 1.51793 1.49433 1.47564 1.43008 1.02213 1.58972 1.11579 1.19721 1.23435 1.16936 0.95281 0.91361 1.26117 0.93723 0.90650 1.06716 1.70570 1.37286 1.32298 1.07461 0.83441 0.75733 0.76499 0.74105 1.20760 1.21703 1.21194 1.21759 0.87512 1.01857 0.92700 1.23084 0.96725 0.97831 1.03628 1.23251 1.06353 0.91882 1.02637 0.91707 0.92695 0.92470 0.95015 0.92587 0.92640 0.91655 0.88169 0.91928 0.97166 0.89240 0.94316 0.92138 0.88140 0.87370 0.89866 0.89813 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.84 37.16 0.33 -1.52 16 2 C 0.07 1.08 2.68 -67.71 -0.18 0.90 16 3 C -0.15 -1.91 8.99 37.16 0.33 -1.58 16 4 N -0.51 -9.77 4.37 -236.33 -1.03 -10.81 16 5 C 0.02 0.36 8.84 60.06 0.53 0.89 16 6 C 0.04 0.82 3.80 -4.97 -0.02 0.80 16 7 C 0.46 11.77 6.15 -10.99 -0.07 11.71 16 8 O -0.52 -15.18 12.10 5.54 0.07 -15.11 16 9 N -0.44 -10.94 2.62 -107.72 -0.28 -11.22 16 10 C -0.43 -11.85 7.72 -14.94 -0.12 -11.96 16 11 H 0.07 1.87 7.50 -52.49 -0.39 1.47 16 12 C 0.04 1.16 4.21 -17.47 -0.07 1.09 16 13 N -0.85 -25.62 12.31 55.50 0.68 -24.94 16 14 Si 1.07 25.97 29.98 -169.99 -5.10 20.87 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.07 1.36 6.01 -67.92 -0.41 0.96 16 19 C -0.17 -3.20 9.81 -26.73 -0.26 -3.47 16 20 C -0.20 -3.53 10.26 -26.73 -0.27 -3.81 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.73 6.26 -51.93 -0.33 0.41 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.74 6.20 -51.93 -0.32 0.41 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 2.40 5.88 -51.93 -0.31 2.10 16 29 H 0.06 1.06 6.01 -51.93 -0.31 0.75 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 1.62 5.79 -51.93 -0.30 1.32 16 32 H 0.04 0.74 7.55 -51.93 -0.39 0.35 16 33 H 0.27 8.22 7.40 -40.82 -0.30 7.92 16 34 H 0.10 1.79 6.77 -51.93 -0.35 1.44 16 35 H 0.11 2.23 6.88 -51.93 -0.36 1.88 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -32.32 299.54 -7.32 -39.64 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.96 Total: 3.04 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.21 Total: -5.98 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.63 Total: -46.97 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.07 Total: -15.11 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.10 Total: 20.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.32 -7.32 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070944370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.254 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds