Wall clock time and date at job start Sun Mar 29 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 N 1.46500 * 109.47322 * 239.99910 * 2 1 3 5 5 C 1.33375 * 117.70418 * 58.80612 * 4 2 1 6 6 O 1.21277 * 118.49048 * 4.32053 * 5 4 2 7 7 C 1.50438 * 123.01764 * 184.29818 * 5 4 2 8 8 N 1.47043 * 108.89410 * 347.28958 * 7 5 4 9 9 C 1.36937 * 121.35454 * 222.71425 * 8 7 5 10 10 H 1.08003 * 119.99867 * 152.75816 * 9 8 7 11 11 C 1.38803 * 120.00067 * 332.75658 * 9 8 7 12 12 N 1.31623 * 120.00077 * 162.36276 * 11 9 8 13 13 Si 1.86800 * 120.00274 * 342.36134 * 11 9 8 14 14 H 1.48497 * 109.47089 * 88.42109 * 13 11 9 15 15 H 1.48500 * 109.47189 * 208.42314 * 13 11 9 16 16 H 1.48504 * 109.46906 * 328.41872 * 13 11 9 17 17 C 1.47271 * 117.29113 * 42.73839 * 8 7 5 18 18 C 1.45646 * 117.70136 * 238.54277 * 4 2 1 19 19 C 1.53008 * 109.21881 * 278.45315 * 18 4 2 20 20 C 1.53001 * 109.21911 * 37.78589 * 18 4 2 21 21 H 1.08990 * 109.47071 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46723 * 60.00193 * 1 2 3 23 23 H 1.08998 * 109.47346 * 300.00302 * 1 2 3 24 24 H 1.09006 * 109.46723 * 119.99807 * 2 1 3 25 25 H 1.08994 * 109.46955 * 299.99965 * 3 2 1 26 26 H 1.08998 * 109.47227 * 59.99626 * 3 2 1 27 27 H 1.09003 * 109.47176 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.56544 * 107.11767 * 7 5 4 29 29 H 1.09000 * 109.56838 * 227.34790 * 7 5 4 30 30 H 0.97002 * 120.00389 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.71919 * 58.17232 * 17 8 7 32 32 H 1.09004 * 109.71964 * 178.82174 * 17 8 7 33 33 H 1.09002 * 109.46745 * 59.99941 * 19 18 4 34 34 H 1.08998 * 109.46918 * 180.02562 * 19 18 4 35 35 H 1.09001 * 109.46661 * 300.00366 * 19 18 4 36 36 H 1.09003 * 109.46975 * 52.96798 * 20 18 4 37 37 H 1.09004 * 109.47197 * 172.96131 * 20 18 4 38 38 H 1.08998 * 109.47287 * 292.96102 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6485 -0.2101 -2.3841 6 8 0.9978 0.8128 -2.4172 7 6 2.0017 -0.8784 -3.6847 8 7 3.0276 -1.9009 -3.4315 9 6 4.1011 -2.0556 -4.2676 10 1 5.0292 -2.4553 -3.8864 11 6 3.9963 -1.6989 -5.6049 12 7 5.0832 -1.5131 -6.3236 13 14 2.3127 -1.4824 -6.3847 14 1 1.8569 -0.0816 -6.1975 15 1 2.3967 -1.7859 -7.8359 16 1 1.3462 -2.4078 -5.7406 17 6 2.8535 -2.7522 -2.2424 18 6 2.8786 -1.8502 -1.0046 19 6 4.3113 -1.3779 -0.7489 20 6 2.3882 -2.6465 0.2063 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.1135 -1.3489 -4.1064 29 1 2.3881 -0.1363 -4.3833 30 1 5.0100 -1.2634 -7.2580 31 1 1.8990 -3.2753 -2.3012 32 1 3.6670 -3.4754 -2.1855 33 1 4.3340 -0.7542 0.1448 34 1 4.9588 -2.2428 -0.6054 35 1 4.6614 -0.8001 -1.6042 36 1 1.3275 -2.8688 0.0897 37 1 2.9488 -3.5786 0.2795 38 1 2.5392 -2.0598 1.1124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075924794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:37 Heat of formation + Delta-G solvation = -21.003620 kcal Electronic energy + Delta-G solvation = -19128.360061 eV Core-core repulsion = 16392.228018 eV Total energy + Delta-G solvation = -2736.132043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93505 -38.49701 -37.33943 -34.78735 -33.40801 -31.87730 -28.89421 -28.49187 -27.92477 -27.70401 -24.03879 -23.08087 -21.96577 -19.79988 -18.60039 -17.90942 -17.12659 -16.66626 -16.51200 -15.84835 -15.39379 -14.93339 -14.77654 -14.63472 -14.43656 -14.11572 -13.88355 -13.56325 -13.31575 -13.09762 -12.78030 -12.70332 -12.52342 -12.44140 -12.30140 -12.07786 -12.02159 -11.85453 -11.74542 -11.63749 -10.95304 -10.43090 -9.66006 -9.03655 -8.21324 -5.57715 1.28667 1.35376 1.41423 1.58888 2.03507 2.35682 2.90834 3.21790 3.56173 3.81000 4.05459 4.10495 4.15416 4.25183 4.33084 4.38203 4.41815 4.59840 4.74697 4.79341 4.81649 4.89149 4.95977 4.97473 5.01333 5.06634 5.10221 5.25016 5.40035 5.42144 5.49175 5.72643 5.81052 6.08045 6.53832 6.73424 7.18933 7.49684 7.89782 8.97583 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028880 B = 0.009970 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.283716 B = 2807.735014 C = 3234.100333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 C -0.166 4.166 4 N -0.576 5.576 5 C 0.512 3.488 6 O -0.583 6.583 7 C 0.105 3.895 8 N -0.612 5.612 9 C -0.239 4.239 10 H 0.072 0.928 11 C -0.028 4.028 12 N -0.951 5.951 13 Si 0.930 3.070 14 H -0.286 1.286 15 H -0.304 1.304 16 H -0.257 1.257 17 C 0.136 3.864 18 C 0.143 3.857 19 C -0.142 4.142 20 C -0.146 4.146 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -2.026 16.950 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.224 4.224 4 N -0.307 5.307 5 C 0.299 3.701 6 O -0.465 6.465 7 C -0.023 4.023 8 N -0.338 5.338 9 C -0.368 4.368 10 H 0.089 0.911 11 C -0.223 4.223 12 N -0.596 5.596 13 Si 0.760 3.240 14 H -0.213 1.213 15 H -0.232 1.232 16 H -0.182 1.182 17 C 0.011 3.989 18 C 0.057 3.943 19 C -0.200 4.200 20 C -0.204 4.204 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.103 0.897 24 H 0.138 0.862 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.327 -1.523 16.776 18.369 hybrid contribution -0.357 0.423 -1.417 1.522 sum -7.684 -1.100 15.359 17.209 Atomic orbital electron populations 1.22130 0.94686 1.02170 1.02946 1.21400 0.94955 0.93220 0.88065 1.22193 1.00368 0.96903 1.02958 1.47544 1.48182 1.29815 1.05177 1.20653 0.78565 0.84232 0.86619 1.90540 1.42585 1.25372 1.88019 1.21543 0.93723 0.92508 0.94565 1.44475 1.24933 1.35603 1.28741 1.18817 0.90115 1.38887 0.89009 0.91079 1.25813 0.99138 1.00391 0.96984 1.69900 1.28939 1.51831 1.08980 0.86222 0.82635 0.78094 0.77075 1.21304 1.23234 1.18165 1.21708 1.01430 0.92078 0.83667 1.21194 0.90083 0.85387 0.97649 1.22068 0.95303 1.01935 1.00719 1.22167 1.02172 1.00649 0.95391 0.92253 0.93506 0.89742 0.86188 0.93288 0.89806 0.93591 0.92233 0.90798 0.92848 0.93100 0.88959 0.91525 0.90317 0.95459 0.91631 0.89091 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.06 71.98 0.65 -3.30 16 2 C 0.13 3.20 2.64 44.99 0.12 3.32 16 3 C -0.17 -4.57 9.09 71.98 0.65 -3.91 16 4 N -0.58 -18.49 2.29 -755.07 -1.73 -20.22 16 5 C 0.51 21.01 6.98 87.79 0.61 21.62 16 6 O -0.58 -25.98 12.49 -3.02 -0.04 -26.02 16 7 C 0.10 4.79 4.29 85.45 0.37 5.16 16 8 N -0.61 -27.72 2.55 -703.10 -1.80 -29.51 16 9 C -0.24 -12.93 10.13 84.03 0.85 -12.08 16 10 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 11 C -0.03 -1.60 5.29 84.86 0.45 -1.15 16 12 N -0.95 -58.90 13.97 21.65 0.30 -58.60 16 13 Si 0.93 46.71 24.16 68.60 1.66 48.37 16 14 H -0.29 -14.37 6.54 99.48 0.65 -13.72 16 15 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 16 H -0.26 -12.15 6.49 99.48 0.65 -11.51 16 17 C 0.14 4.61 5.27 86.29 0.45 5.07 16 18 C 0.14 3.97 0.90 3.83 0.00 3.98 16 19 C -0.14 -4.04 8.56 71.98 0.62 -3.43 16 20 C -0.15 -2.60 7.67 71.98 0.55 -2.04 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.49 5.98 -2.38 -0.01 1.48 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.12 2.25 5.51 -2.38 -0.01 2.24 16 25 H 0.05 1.72 5.85 -2.39 -0.01 1.70 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 2.70 6.23 -2.38 -0.01 2.68 16 29 H 0.07 3.82 5.26 -2.39 -0.01 3.80 16 30 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.05 1.61 8.09 -2.38 -0.02 1.59 16 32 H 0.09 2.96 7.89 -2.38 -0.02 2.94 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.03 1.02 7.99 -2.39 -0.02 1.00 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.31 8.13 -2.38 -0.02 1.30 16 38 H 0.08 1.14 6.33 -2.39 -0.02 1.13 16 Total: -1.00 -68.03 286.13 4.64 -63.39 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.91 Total: 9.38 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.33 Total: 13.22 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.23 Total: -108.33 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.04 Total: -26.02 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.66 Total: 48.37 kcal Total: -68.03 4.64 -63.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075924794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.385 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds