Wall clock time and date at job start Sun Mar 29 2020 22:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.50065 * 2 1 4 4 C 1.53125 * 109.50429 * 120.07602 * 2 1 3 5 5 C 1.53117 * 109.16116 * 177.63739 * 4 2 1 6 6 H 1.08998 * 109.50355 * 182.40358 * 5 4 2 7 7 C 1.52999 * 109.50252 * 62.32509 * 5 4 2 8 8 C 1.53041 * 109.27701 * 302.34769 * 5 4 2 9 9 N 1.46844 * 109.52428 * 59.17939 * 8 5 4 10 10 C 1.46899 * 111.00032 * 174.16416 * 9 8 5 11 11 C 1.50708 * 109.46949 * 293.64076 * 10 9 8 12 12 O 1.21294 * 119.99916 * 353.78292 * 11 10 9 13 13 N 1.34772 * 120.00116 * 173.77974 * 11 10 9 14 14 C 1.37094 * 120.00032 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00333 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99913 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00273 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47398 * 90.00176 * 18 16 14 20 20 H 1.48503 * 109.47387 * 209.99872 * 18 16 14 21 21 H 1.48504 * 109.47400 * 330.00014 * 18 16 14 22 22 C 1.46849 * 111.19789 * 298.25500 * 9 8 5 23 23 H 1.09006 * 109.47125 * 299.99921 * 1 2 3 24 24 H 1.08998 * 109.47413 * 60.00023 * 1 2 3 25 25 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.51972 * 297.54071 * 4 2 1 27 27 H 1.09001 * 109.51962 * 57.66937 * 4 2 1 28 28 H 1.08999 * 109.47102 * 60.00470 * 7 5 4 29 29 H 1.09003 * 109.47098 * 180.02562 * 7 5 4 30 30 H 1.09002 * 109.47128 * 299.99982 * 7 5 4 31 31 H 1.08998 * 109.46497 * 179.19814 * 8 5 4 32 32 H 1.08999 * 109.46047 * 299.16652 * 8 5 4 33 33 H 1.08998 * 109.47640 * 53.63833 * 10 9 8 34 34 H 1.09003 * 109.47212 * 173.64133 * 10 9 8 35 35 H 0.97003 * 120.00134 * 0.02562 * 13 11 10 36 36 H 0.97005 * 120.00436 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46684 * 301.73238 * 22 9 8 38 38 H 1.09004 * 109.46249 * 181.75728 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7706 1.2116 6 1 3.9396 -1.3217 2.0768 7 6 4.1270 0.6546 1.2393 8 6 4.0238 -1.4715 -0.0714 9 7 3.5101 -0.7411 -1.2371 10 6 4.0387 -1.3047 -2.4864 11 6 5.5262 -1.0718 -2.5527 12 8 6.0727 -0.3967 -1.7060 13 7 6.2493 -1.6137 -3.5526 14 6 7.6023 -1.4014 -3.6132 15 1 8.0889 -0.8002 -2.8594 16 6 8.3477 -1.9597 -4.6445 17 7 7.7556 -2.6907 -5.5620 18 14 10.1914 -1.6710 -4.7266 19 1 10.8940 -2.7406 -3.9733 20 1 10.6332 -1.6921 -6.1442 21 1 10.5130 -0.3507 -4.1276 22 6 2.0417 -0.7233 -1.2478 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7151 -0.1866 2.1399 27 1 1.6449 -1.7386 1.2698 28 1 3.8015 1.1539 2.1519 29 1 5.2162 0.6204 1.2121 30 1 3.7595 1.2049 0.3731 31 1 5.1129 -1.4942 -0.1080 32 1 3.6389 -2.4912 -0.0832 33 1 3.8370 -2.3755 -2.5160 34 1 3.5570 -0.8206 -3.3359 35 1 5.8122 -2.1534 -4.2299 36 1 8.2759 -3.0802 -6.2821 37 1 1.6661 -1.7465 -1.2540 38 1 1.6913 -0.2024 -2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076667754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:02 Heat of formation + Delta-G solvation = -69.963363 kcal Electronic energy + Delta-G solvation = -17874.231398 eV Core-core repulsion = 15135.976301 eV Total energy + Delta-G solvation = -2738.255097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85278 -39.48560 -36.04657 -35.08659 -33.97198 -33.22378 -29.16996 -27.69991 -27.34502 -26.49124 -23.66353 -22.45906 -20.90013 -19.83908 -19.60726 -17.74726 -16.84260 -16.51912 -16.26400 -15.83470 -15.64976 -15.26491 -15.05105 -14.72252 -14.33730 -13.90658 -13.63024 -13.49014 -13.10974 -12.86410 -12.79803 -12.64166 -12.41804 -12.39309 -12.22184 -12.11935 -11.79109 -11.49803 -11.35782 -11.19353 -10.94878 -10.21892 -9.98165 -9.11526 -8.45537 -5.93977 1.37857 1.41143 1.54132 2.07848 2.29027 2.80102 3.21341 3.41185 3.80234 3.94128 3.99568 4.17641 4.30379 4.36128 4.43737 4.54221 4.57945 4.65345 4.74000 4.83199 4.85278 4.91383 4.96375 5.01027 5.10186 5.21865 5.24816 5.36841 5.41665 5.48896 5.49426 5.69928 5.93778 6.14043 6.31940 6.62766 7.14670 7.58543 8.14969 8.72158 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046875 B = 0.005205 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.185487 B = 5378.246614 C = 5756.938318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.103 4.103 5 C -0.084 4.084 6 H 0.076 0.924 7 C -0.126 4.126 8 C 0.062 3.938 9 N -0.528 5.528 10 C 0.057 3.943 11 C 0.442 3.558 12 O -0.609 6.609 13 N -0.577 5.577 14 C -0.331 4.331 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.923 5.923 18 Si 0.992 3.008 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.273 1.273 22 C 0.059 3.941 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.395 0.605 36 H 0.277 0.723 37 H 0.037 0.963 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 1.410 8.991 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.141 4.141 5 C -0.103 4.103 6 H 0.094 0.906 7 C -0.183 4.183 8 C -0.066 4.066 9 N -0.253 5.253 10 C -0.074 4.074 11 C 0.229 3.771 12 O -0.494 6.494 13 N -0.215 5.215 14 C -0.460 4.460 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.564 5.564 18 Si 0.816 3.184 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.068 4.068 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.577 2.246 9.419 16.677 hybrid contribution 0.820 -1.116 -0.822 1.611 sum -12.757 1.130 8.597 15.425 Atomic orbital electron populations 1.21736 0.93110 1.02249 1.02464 1.21186 0.96238 0.99762 0.93539 0.91205 1.21654 0.93347 1.00821 0.98248 1.21139 0.96724 0.96789 0.95665 0.90584 1.21594 0.99184 0.96286 1.01263 1.22109 0.99628 0.93982 0.90913 1.61430 1.08476 1.54685 1.00678 1.21728 0.91760 0.99203 0.94735 1.20775 0.89958 0.83300 0.83058 1.90480 1.73523 1.43628 1.41810 1.41954 1.07730 1.46712 1.25128 1.19643 0.84068 1.31351 1.10965 0.90418 1.26018 1.04687 0.95842 0.94735 1.69674 1.38423 1.34016 1.14273 0.84938 0.76981 0.78642 0.77827 1.19670 1.19509 1.19830 1.22281 0.85370 0.99437 0.99698 0.91492 0.92196 0.92291 0.90297 0.91656 0.91876 0.95638 0.92774 0.93086 0.95450 0.92157 0.87373 0.77165 0.91363 0.94439 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.20 71.98 0.66 -1.45 16 2 C -0.09 -1.87 2.53 -10.74 -0.03 -1.90 16 3 H 0.07 1.67 6.58 -2.39 -0.02 1.66 16 4 C -0.10 -2.14 4.79 30.68 0.15 -2.00 16 5 C -0.08 -2.30 3.21 -10.74 -0.03 -2.33 16 6 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.13 -3.76 8.75 71.98 0.63 -3.13 16 8 C 0.06 2.09 4.55 86.33 0.39 2.48 16 9 N -0.53 -17.78 3.63 -900.91 -3.27 -21.06 16 10 C 0.06 2.08 5.45 85.56 0.47 2.55 16 11 C 0.44 21.69 7.31 87.66 0.64 22.33 16 12 O -0.61 -34.33 14.28 -3.07 -0.04 -34.37 16 13 N -0.58 -30.44 5.29 -306.98 -1.62 -32.06 16 14 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 15 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 16 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 17 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 18 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.06 1.49 4.74 86.33 0.41 1.89 16 23 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 1.77 6.01 -2.39 -0.01 1.76 16 31 H 0.05 2.19 6.05 -2.39 -0.01 2.17 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 34 H 0.11 3.50 7.98 -2.39 -0.02 3.48 16 35 H 0.39 19.82 7.90 -92.71 -0.73 19.09 16 36 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.84 8.01 -2.38 -0.02 1.83 16 Total: -1.00 -66.09 300.38 2.24 -63.85 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.30 Total: 28.46 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.57 Total: -0.16 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -4.61 Total: -103.48 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.04 Total: -34.37 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.09 2.24 -63.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.117 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds