Wall clock time and date at job start Sun Mar 29 2020 22:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.50195 * 2 1 4 4 C 1.53117 * 109.50269 * 239.88538 * 2 1 3 5 5 C 1.53124 * 109.14974 * 182.39831 * 4 2 1 6 6 H 1.09005 * 109.49137 * 177.60200 * 5 4 2 7 7 C 1.52997 * 109.51128 * 297.71843 * 5 4 2 8 8 C 1.53032 * 109.27814 * 57.67406 * 5 4 2 9 9 N 1.46852 * 109.51144 * 300.79681 * 8 5 4 10 10 C 1.46896 * 110.99982 * 185.84766 * 9 8 5 11 11 C 1.50699 * 109.47287 * 66.39260 * 10 9 8 12 12 O 1.21293 * 119.99839 * 6.27307 * 11 10 9 13 13 N 1.34778 * 120.00404 * 186.26876 * 11 10 9 14 14 C 1.37100 * 120.00110 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99543 * 359.97438 * 14 13 11 16 16 C 1.38945 * 119.99938 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00206 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46916 * 60.00062 * 18 16 14 20 20 H 1.48496 * 109.47718 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47220 * 300.00211 * 18 16 14 22 22 C 1.46846 * 111.19674 * 61.75315 * 9 8 5 23 23 H 1.09001 * 109.47112 * 299.92115 * 1 2 3 24 24 H 1.08994 * 109.47036 * 59.91657 * 1 2 3 25 25 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.52078 * 302.30599 * 4 2 1 27 27 H 1.09002 * 109.52507 * 62.50263 * 4 2 1 28 28 H 1.08998 * 109.46754 * 179.80708 * 7 5 4 29 29 H 1.08994 * 109.47263 * 299.81316 * 7 5 4 30 30 H 1.08999 * 109.46679 * 59.81679 * 7 5 4 31 31 H 1.09008 * 109.46141 * 180.79786 * 8 5 4 32 32 H 1.08997 * 109.47119 * 60.81359 * 8 5 4 33 33 H 1.08999 * 109.47351 * 186.39634 * 10 9 8 34 34 H 1.08998 * 109.47289 * 306.39495 * 10 9 8 35 35 H 0.96996 * 119.99918 * 0.02562 * 13 11 10 36 36 H 0.97007 * 120.00507 * 180.02562 * 17 16 14 37 37 H 1.09008 * 109.46254 * 58.27066 * 22 9 8 38 38 H 1.08998 * 109.46724 * 178.24692 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7242 -1.2485 5 6 3.5712 -0.7720 -1.2103 6 1 3.9395 -1.3237 -2.0753 7 6 4.1278 0.6529 -1.2374 8 6 4.0229 -1.4730 0.0728 9 7 3.5093 -0.7416 1.2381 10 6 4.0373 -1.3050 2.4878 11 6 5.5247 -1.0723 2.5548 12 8 6.0715 -0.3966 1.7089 13 7 6.2474 -1.6148 3.5548 14 6 7.6005 -1.4026 3.6160 15 1 8.0873 -0.8010 2.8626 16 6 8.3455 -1.9624 4.6465 17 7 7.7532 -2.6948 5.5628 18 14 10.1892 -1.6739 4.7296 19 1 10.4578 -0.2177 4.8427 20 1 10.7468 -2.3731 5.9151 21 1 10.8287 -2.2010 3.4973 22 6 2.0410 -0.7230 1.2483 23 1 -0.3633 0.5126 0.8907 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6452 -1.7395 -1.2684 27 1 1.7157 -0.1876 -2.1398 28 1 5.2168 0.6181 -1.2067 29 1 3.8057 1.1515 -2.1515 30 1 3.7575 1.2040 -0.3729 31 1 5.1121 -1.4961 0.1099 32 1 3.6374 -2.4924 0.0849 33 1 3.5551 -0.8207 3.3369 34 1 3.8354 -2.3757 2.5175 35 1 5.8101 -2.1554 4.2311 36 1 8.2733 -3.0853 6.2826 37 1 1.6648 -1.7460 1.2550 38 1 1.6905 -0.2014 2.1389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076667756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:04 Heat of formation + Delta-G solvation = -69.860368 kcal Electronic energy + Delta-G solvation = -17874.447513 eV Core-core repulsion = 15136.196882 eV Total energy + Delta-G solvation = -2738.250631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85297 -39.48518 -36.04487 -35.08621 -33.97288 -33.22217 -29.16903 -27.69995 -27.34528 -26.48936 -23.66283 -22.45957 -20.89870 -19.83732 -19.60667 -17.74612 -16.84147 -16.51784 -16.26374 -15.83469 -15.65328 -15.26309 -15.05050 -14.72255 -14.33574 -13.90532 -13.63019 -13.48309 -13.10783 -12.86294 -12.79481 -12.64176 -12.42768 -12.39616 -12.22235 -12.12105 -11.79113 -11.49281 -11.35831 -11.19219 -10.94885 -10.21862 -9.98175 -9.11536 -8.45238 -5.93813 1.39817 1.41115 1.52197 2.08010 2.29117 2.80121 3.21538 3.41261 3.80243 3.94094 3.99581 4.17660 4.30378 4.36122 4.43738 4.54264 4.57941 4.65304 4.73991 4.83220 4.85222 4.91374 4.96457 5.01002 5.10115 5.21848 5.24876 5.36836 5.41506 5.48909 5.49430 5.69979 5.93768 6.14007 6.31908 6.62906 7.14651 7.58609 8.15051 8.72198 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046878 B = 0.005205 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.146154 B = 5378.034018 C = 5756.376616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.103 4.103 5 C -0.085 4.085 6 H 0.076 0.924 7 C -0.126 4.126 8 C 0.062 3.938 9 N -0.528 5.528 10 C 0.057 3.943 11 C 0.442 3.558 12 O -0.609 6.609 13 N -0.577 5.577 14 C -0.332 4.332 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.923 5.923 18 Si 0.992 3.008 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.272 1.272 22 C 0.059 3.941 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.277 0.723 37 H 0.037 0.963 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 1.417 -8.992 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.141 4.141 5 C -0.103 4.103 6 H 0.094 0.906 7 C -0.183 4.183 8 C -0.066 4.066 9 N -0.253 5.253 10 C -0.074 4.074 11 C 0.229 3.771 12 O -0.494 6.494 13 N -0.215 5.215 14 C -0.461 4.461 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.564 5.564 18 Si 0.816 3.184 19 H -0.198 1.198 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.068 4.068 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.565 2.247 -9.418 16.666 hybrid contribution 0.819 -1.107 0.821 1.603 sum -12.746 1.141 -8.597 15.416 Atomic orbital electron populations 1.21735 0.93113 1.02248 1.02464 1.21187 0.96241 0.99762 0.93537 0.91196 1.21655 0.93346 1.00811 0.98252 1.21142 0.96734 0.96791 0.95661 0.90584 1.21591 0.99186 0.96286 1.01258 1.22111 0.99620 0.93978 0.90923 1.61430 1.08500 1.54660 1.00679 1.21724 0.91770 0.99202 0.94728 1.20773 0.89959 0.83318 0.83054 1.90479 1.73500 1.43620 1.41846 1.41951 1.07733 1.46653 1.25170 1.19611 0.84079 1.31368 1.11057 0.90403 1.26016 1.04690 0.95807 0.94748 1.69670 1.38516 1.33881 1.14303 0.85000 0.76894 0.78535 0.77966 1.19752 1.19451 1.19758 1.22283 0.85371 0.99439 0.99698 0.92209 0.91482 0.92292 0.91655 0.90284 0.95641 0.91883 0.92764 0.93097 0.95446 0.87377 0.92165 0.77169 0.91356 0.94442 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.20 71.98 0.66 -1.46 16 2 C -0.09 -1.87 2.53 -10.74 -0.03 -1.90 16 3 H 0.07 1.67 6.58 -2.39 -0.02 1.66 16 4 C -0.10 -2.14 4.79 30.67 0.15 -2.00 16 5 C -0.08 -2.30 3.21 -10.74 -0.03 -2.34 16 6 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 7 C -0.13 -3.76 8.75 71.98 0.63 -3.13 16 8 C 0.06 2.09 4.56 86.32 0.39 2.48 16 9 N -0.53 -17.79 3.63 -900.93 -3.27 -21.06 16 10 C 0.06 2.08 5.45 85.56 0.47 2.55 16 11 C 0.44 21.69 7.31 87.66 0.64 22.33 16 12 O -0.61 -34.32 14.29 -3.07 -0.04 -34.36 16 13 N -0.58 -30.44 5.29 -306.98 -1.62 -32.06 16 14 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 15 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 16 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 17 N -0.92 -50.66 13.05 21.66 0.28 -50.37 16 18 Si 0.99 43.67 29.55 68.60 2.03 45.69 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.06 1.48 4.74 86.33 0.41 1.89 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.77 6.01 -2.39 -0.01 1.76 16 31 H 0.05 2.18 6.06 -2.38 -0.01 2.17 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.11 3.50 7.98 -2.39 -0.02 3.48 16 34 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 35 H 0.39 19.83 7.90 -92.71 -0.73 19.10 16 36 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 37 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.08 1.85 8.01 -2.39 -0.02 1.83 16 Total: -1.00 -66.02 300.38 2.24 -63.77 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.30 Total: 28.58 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.57 Total: -0.20 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -4.61 Total: -103.49 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.04 Total: -34.36 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.02 2.24 -63.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076667756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.087 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds