Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 N 1.46498 * 109.46661 * 119.99733 * 2 1 3 5 5 C 1.46769 * 124.34778 * 120.00303 * 4 2 1 6 6 C 1.54478 * 105.47364 * 162.98333 * 5 4 2 7 7 C 1.54631 * 101.76507 * 25.41386 * 6 5 4 8 8 H 1.09001 * 110.48624 * 94.01470 * 7 6 5 9 9 N 1.46904 * 110.48608 * 216.52252 * 7 6 5 10 10 C 1.46902 * 111.00203 * 303.95666 * 9 7 6 11 11 C 1.46895 * 110.99781 * 180.02562 * 9 7 6 12 12 C 1.50706 * 109.47182 * 190.00182 * 11 9 7 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.34417 * 124.35092 * 300.00350 * 4 2 1 21 21 O 1.21277 * 124.94437 * 0.44026 * 20 4 2 22 22 H 1.09000 * 109.46689 * 60.00512 * 1 2 3 23 23 H 1.09002 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47615 * 300.00393 * 1 2 3 25 25 H 1.09004 * 109.47229 * 239.99469 * 2 1 3 26 26 H 1.09000 * 109.47485 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47316 * 299.99992 * 3 2 1 28 28 H 1.09004 * 109.47433 * 59.99593 * 3 2 1 29 29 H 1.09000 * 110.24662 * 43.98118 * 5 4 2 30 30 H 1.08999 * 110.31509 * 282.01931 * 5 4 2 31 31 H 1.08996 * 110.97129 * 267.29636 * 6 5 4 32 32 H 1.09000 * 111.00676 * 143.54409 * 6 5 4 33 33 H 1.09002 * 109.46967 * 296.04616 * 10 9 7 34 34 H 1.08996 * 109.46867 * 56.04646 * 10 9 7 35 35 H 1.08993 * 109.46727 * 176.04565 * 10 9 7 36 36 H 1.09001 * 109.47613 * 70.00528 * 11 9 7 37 37 H 1.09006 * 109.47521 * 310.00146 * 11 9 7 38 38 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1729 6 6 3.4722 -1.9922 2.5897 7 6 2.4202 -1.2416 3.4388 8 1 1.6979 -1.9421 3.8580 9 7 3.0740 -0.4771 4.5093 10 6 3.9094 -1.3499 5.3449 11 6 2.0841 0.2404 5.3237 12 6 2.7924 1.1985 6.2466 13 1 3.8701 1.2678 6.2294 14 6 2.0646 1.9866 7.1127 15 7 0.7524 1.9019 7.1340 16 14 2.9426 3.1736 8.2571 17 1 1.9420 3.8991 9.0803 18 1 3.8606 2.4169 9.1458 19 1 3.7232 4.1491 7.4543 20 6 1.7478 -0.3082 2.4562 21 8 1.0638 0.6457 2.7610 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.6564 -1.7771 0.4311 30 1 2.2657 -2.7722 0.9539 31 1 4.4399 -1.4930 2.6371 32 1 3.5564 -3.0326 2.9037 33 1 3.2784 -2.0798 5.8521 34 1 4.6333 -1.8693 4.7171 35 1 4.4362 -0.7481 6.0854 36 1 1.5111 -0.4752 5.9133 37 1 1.4103 0.7957 4.6711 38 1 0.2965 1.2852 6.5400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -27.158153 kcal Electronic energy + Delta-G solvation = -18287.786610 eV Core-core repulsion = 15551.387686 eV Total energy + Delta-G solvation = -2736.398924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38254 -36.58743 -36.07681 -34.07957 -32.39673 -29.19090 -27.24203 -27.10118 -26.70518 -24.19939 -22.32143 -21.57004 -20.47282 -18.45835 -16.84633 -16.49417 -16.20167 -15.12186 -14.52417 -14.30278 -13.64418 -13.63196 -13.45775 -13.35848 -13.00883 -12.80553 -12.41560 -11.93719 -11.90135 -11.75219 -11.58113 -11.19130 -11.16490 -10.97870 -10.91926 -10.82780 -10.58490 -10.35289 -9.98524 -8.98902 -8.50085 -8.45673 -8.14208 -7.34412 -6.21317 -3.87655 3.00153 3.19494 3.50971 3.55345 3.73123 4.54602 4.59089 4.69161 4.82615 5.00049 5.07741 5.21233 5.26617 5.38172 5.47525 5.55761 5.66650 5.67544 5.74894 5.84354 5.89927 5.96169 6.01417 6.15504 6.25058 6.30148 6.40308 6.67157 6.85923 7.16728 7.31840 7.39346 7.89582 8.10815 8.44309 8.67308 8.72872 9.03196 9.82174 11.18538 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.007061 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.145081 B = 3964.274876 C = 4527.561163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.157 3.843 3 C -0.168 4.168 4 N -0.625 5.625 5 C 0.109 3.891 6 C -0.126 4.126 7 C 0.046 3.954 8 H 0.064 0.936 9 N -0.515 5.515 10 C 0.038 3.962 11 C 0.161 3.839 12 C -0.585 4.585 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.915 5.915 16 Si 1.072 2.928 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.532 3.468 21 O -0.499 6.499 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.012 0.988 34 H 0.049 0.951 35 H 0.078 0.922 36 H -0.027 1.027 37 H 0.064 0.936 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -9.209 -14.786 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.054 3.946 3 C -0.226 4.226 4 N -0.362 5.362 5 C -0.015 4.015 6 C -0.164 4.164 7 C -0.066 4.066 8 H 0.082 0.918 9 N -0.241 5.241 10 C -0.111 4.111 11 C 0.037 3.963 12 C -0.624 4.624 13 H 0.071 0.929 14 C -0.191 4.191 15 N -0.552 5.552 16 Si 0.901 3.099 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.215 1.215 20 C 0.319 3.681 21 O -0.372 6.372 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.096 0.904 36 H -0.009 1.009 37 H 0.082 0.918 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.998 -7.151 -13.708 15.970 hybrid contribution -0.207 -1.933 -0.880 2.134 sum 3.791 -9.084 -14.588 17.599 Atomic orbital electron populations 1.22193 0.95044 1.02040 1.03338 1.20841 0.94245 0.93164 0.86315 1.22183 1.01279 0.95890 1.03274 1.48385 1.52526 1.29304 1.05989 1.21995 0.93673 0.87515 0.98327 1.22718 0.99714 1.00943 0.93045 1.22283 0.95948 0.94456 0.93953 0.91836 1.62171 1.24073 1.24996 1.12840 1.22266 0.96617 0.95481 0.96718 1.20303 0.90936 0.92916 0.92191 1.21918 0.94758 1.23902 1.21774 0.92861 1.25790 0.96103 0.98768 0.98456 1.70745 1.08113 1.37357 1.38957 0.83507 0.74815 0.75859 0.75748 1.20898 1.21633 1.21516 1.20633 0.79880 0.84552 0.83086 1.90675 1.38232 1.27879 1.80387 0.91773 0.92803 0.90731 0.90020 0.92545 0.91902 0.90582 0.90800 0.91723 0.89008 0.89902 0.96959 0.93269 0.90351 1.00908 0.91834 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.20 37.16 0.34 -1.79 16 2 C 0.16 1.98 3.47 -67.93 -0.24 1.75 16 3 C -0.17 -2.29 9.20 37.16 0.34 -1.95 16 4 N -0.62 -9.24 2.83 -164.84 -0.47 -9.71 16 5 C 0.11 1.20 7.30 -3.12 -0.02 1.18 16 6 C -0.13 -1.62 5.43 -25.10 -0.14 -1.76 16 7 C 0.05 0.86 2.66 -67.72 -0.18 0.68 16 8 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 9 N -0.52 -11.69 4.60 -236.34 -1.09 -12.78 16 10 C 0.04 0.73 9.10 60.07 0.55 1.28 16 11 C 0.16 4.52 3.91 -4.98 -0.02 4.50 16 12 C -0.58 -17.64 8.51 -34.44 -0.29 -17.93 16 13 H 0.05 1.59 7.10 -52.48 -0.37 1.21 16 14 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 15 N -0.92 -29.69 13.65 55.43 0.76 -28.94 16 16 Si 1.07 26.66 29.90 -169.99 -5.08 21.58 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.53 10.47 6.99 -10.86 -0.08 10.40 16 21 O -0.50 -12.07 12.34 5.56 0.07 -12.00 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 1.21 6.77 -51.93 -0.35 0.86 16 25 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.33 6.80 -51.93 -0.35 0.98 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.23 7.63 -51.93 -0.40 0.83 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.77 6.61 -51.93 -0.34 0.42 16 35 H 0.08 1.67 6.86 -51.93 -0.36 1.31 16 36 H -0.03 -0.79 7.99 -51.93 -0.41 -1.20 16 37 H 0.06 1.95 5.01 -51.93 -0.26 1.69 16 38 H 0.27 8.82 7.22 -40.82 -0.29 8.53 16 LS Contribution 299.20 15.07 4.51 4.51 Total: -1.00 -35.47 299.20 -7.30 -42.77 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.16 Total: -2.06 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.17 Total: -3.36 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.80 Total: -51.43 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.08 Total: 21.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.47 -7.30 -42.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.611 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds