Wall clock time and date at job start Sun Mar 29 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46911 * 2 1 4 4 C 1.50699 * 109.46879 * 119.99917 * 2 1 3 5 5 H 1.08007 * 119.99717 * 120.00197 * 4 2 1 6 6 C 1.37872 * 120.00103 * 299.99587 * 4 2 1 7 7 N 1.31512 * 120.00426 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99754 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47374 * 270.00133 * 8 6 4 10 10 H 1.48501 * 109.47130 * 30.00755 * 8 6 4 11 11 H 1.48509 * 109.46634 * 150.00561 * 8 6 4 12 12 N 1.46495 * 109.47138 * 239.99923 * 2 1 3 13 13 C 1.46499 * 120.00087 * 300.00278 * 12 2 1 14 14 C 1.34780 * 119.99960 * 119.99888 * 12 2 1 15 15 O 1.21272 * 120.00227 * 355.02175 * 14 12 2 16 16 C 1.50698 * 119.99770 * 175.01989 * 14 12 2 17 17 H 1.08996 * 110.27785 * 32.65499 * 16 14 12 18 18 C 1.54605 * 110.30911 * 270.45895 * 16 14 12 19 19 C 1.54931 * 102.92320 * 219.12797 * 18 16 14 20 20 N 1.48541 * 103.22688 * 37.41685 * 19 18 16 21 21 C 1.47903 * 105.81721 * 320.78979 * 20 19 18 22 22 H 1.08999 * 110.07875 * 144.77570 * 21 20 19 23 23 C 1.53004 * 109.91730 * 265.97787 * 21 20 19 24 24 H 1.08995 * 109.47326 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46980 * 300.00049 * 1 2 3 26 26 H 1.09006 * 109.47124 * 59.99839 * 1 2 3 27 27 H 0.96999 * 120.00668 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47164 * 95.29747 * 13 12 2 29 29 H 1.09003 * 109.46929 * 215.29485 * 13 12 2 30 30 H 1.08997 * 109.47293 * 335.29570 * 13 12 2 31 31 H 1.09004 * 110.72210 * 337.48894 * 18 16 14 32 32 H 1.09000 * 110.72373 * 100.76765 * 18 16 14 33 33 H 1.09000 * 110.67078 * 278.98182 * 19 18 16 34 34 H 1.09001 * 110.81333 * 155.91360 * 19 18 16 35 35 H 1.00903 * 110.99860 * 200.28055 * 20 19 18 36 36 H 1.09006 * 109.46991 * 177.59151 * 23 21 20 37 37 H 1.08999 * 109.47251 * 297.59263 * 23 21 20 38 38 H 1.09005 * 109.46973 * 57.59447 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.3427 -2.1616 4.4119 10 1 3.6293 -1.7584 3.7122 11 1 2.4865 -0.1413 5.1123 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0120 1.1485 -1.9393 16 6 3.3877 -0.7747 -3.2543 17 1 2.7152 -1.5676 -3.5815 18 6 4.7671 -1.3608 -2.8746 19 6 5.6039 -1.1375 -4.1592 20 7 5.1300 0.1826 -4.6484 21 6 3.6699 0.1990 -4.4135 22 1 3.3459 1.2037 -4.1417 23 6 2.9340 -0.2628 -5.6730 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1610 3.4844 28 1 0.7909 -2.1448 -2.0779 29 1 2.5013 -2.6053 -1.9028 30 1 1.4377 -2.5729 -0.4759 31 1 5.1987 -0.8177 -2.0338 32 1 4.6853 -2.4237 -2.6475 33 1 5.3975 -1.9165 -4.8932 34 1 6.6683 -1.1020 -3.9268 35 1 5.3400 0.3017 -5.6281 36 1 1.8618 -0.2888 -5.4784 37 1 3.1386 0.4311 -6.4883 38 1 3.2774 -1.2597 -5.9494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086271945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:34 Heat of formation + Delta-G solvation = -37.053430 kcal Electronic energy + Delta-G solvation = -18204.303481 eV Core-core repulsion = 15467.475465 eV Total energy + Delta-G solvation = -2736.828015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87244 -37.61140 -35.21582 -32.88150 -31.10355 -30.66816 -28.95340 -26.17941 -25.81649 -25.19042 -22.14499 -21.10394 -19.91129 -18.19233 -16.83946 -16.32012 -16.15858 -15.34435 -14.73735 -14.37648 -14.07855 -13.40068 -13.13235 -12.86218 -12.62324 -12.45156 -12.31047 -12.11223 -11.64462 -11.50782 -11.41937 -11.28967 -11.04037 -10.86579 -10.77371 -10.60460 -10.56968 -10.23380 -10.15524 -9.15972 -8.82508 -8.43659 -8.39191 -7.54138 -6.05796 -4.13999 3.26697 3.33618 3.35787 3.41036 3.97094 4.27520 4.40583 4.72987 4.91052 4.99917 5.20570 5.24991 5.33915 5.39055 5.46688 5.60068 5.64017 5.75819 5.89871 5.98656 6.01848 6.03095 6.26004 6.37872 6.39790 6.78189 6.86172 6.89323 7.09874 7.38292 7.47742 7.56902 7.74000 8.04652 8.22402 8.58038 8.85462 9.11877 9.52706 10.99475 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035198 B = 0.006466 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.316763 B = 4329.582997 C = 4597.872466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.512 3.488 15 O -0.546 6.546 16 C -0.117 4.117 17 H 0.090 0.910 18 C -0.107 4.107 19 C 0.039 3.961 20 N -0.661 5.661 21 C 0.076 3.924 22 H 0.105 0.895 23 C -0.175 4.175 24 H 0.028 0.972 25 H 0.092 0.908 26 H 0.010 0.990 27 H 0.263 0.737 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.333 0.667 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -7.101 -13.280 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.325 5.325 13 C -0.060 4.060 14 C 0.299 3.701 15 O -0.424 6.424 16 C -0.140 4.140 17 H 0.108 0.892 18 C -0.146 4.146 19 C -0.090 4.090 20 N -0.290 5.290 21 C -0.034 4.034 22 H 0.123 0.877 23 C -0.234 4.234 24 H 0.047 0.953 25 H 0.111 0.889 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.886 -5.946 -12.440 14.326 hybrid contribution -0.167 -1.314 0.174 1.336 sum 3.719 -7.260 -12.266 14.731 Atomic orbital electron populations 1.22077 0.98281 0.99290 1.00746 1.18929 0.90884 0.94521 0.79939 0.91966 1.21331 1.31805 1.12985 0.90337 0.92280 1.24897 0.94974 0.94968 0.98961 1.69880 1.36354 1.22584 1.23739 0.86500 0.79164 0.79299 0.82452 1.20635 1.19942 1.21085 1.48212 1.49008 1.11577 1.23656 1.21586 0.98569 0.83528 1.02268 1.20137 0.79049 0.87403 0.83555 1.90638 1.60689 1.15543 1.75515 1.22238 0.98271 0.98313 0.95150 0.89161 1.22385 0.93057 1.00639 0.98475 1.23026 0.99929 0.90247 0.95803 1.63240 1.11860 1.30867 1.23051 1.22297 0.87589 1.00878 0.92592 0.87684 1.22494 1.01715 1.00936 0.98280 0.95255 0.88903 0.97058 0.92686 0.94153 0.93049 0.89967 0.89976 0.90672 0.94318 0.90063 0.85085 0.91740 0.92229 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 2 C 0.26 6.69 2.63 -69.08 -0.18 6.50 16 3 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -14.30 7.95 -34.44 -0.27 -14.58 16 5 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.36 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.59 -12.84 2.75 -175.27 -0.48 -13.33 16 13 C 0.08 1.43 8.77 59.85 0.52 1.96 16 14 C 0.51 10.85 6.67 -10.98 -0.07 10.78 16 15 O -0.55 -13.88 14.95 5.56 0.08 -13.80 16 16 C -0.12 -1.83 2.10 -90.41 -0.19 -2.02 16 17 H 0.09 1.21 6.26 -51.93 -0.33 0.89 16 18 C -0.11 -1.52 6.37 -24.87 -0.16 -1.68 16 19 C 0.04 0.46 7.54 -1.90 -0.01 0.45 16 20 N -0.66 -8.83 7.38 -103.13 -0.76 -9.60 16 21 C 0.08 1.11 3.55 -66.64 -0.24 0.87 16 22 H 0.11 1.87 6.76 -51.93 -0.35 1.52 16 23 C -0.18 -1.93 8.93 37.16 0.33 -1.60 16 24 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.72 6.24 -51.93 -0.32 0.39 16 30 H 0.08 1.48 7.10 -51.93 -0.37 1.11 16 31 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 32 H 0.07 0.90 7.90 -51.93 -0.41 0.49 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.33 3.58 8.43 -39.29 -0.33 3.25 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -31.38 299.98 -7.14 -38.52 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.07 Total: 3.17 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.03 Total: -0.85 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.62 Total: -47.66 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.38 -7.14 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086271945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.462 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds