Wall clock time and date at job start Sun Mar 29 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47578 * 2 1 4 4 N 1.46904 * 109.47073 * 120.00443 * 2 1 3 5 5 C 1.46898 * 111.00398 * 140.51339 * 4 2 1 6 6 C 1.50704 * 109.47038 * 286.53505 * 5 4 2 7 7 N 1.34769 * 120.00104 * 172.05354 * 6 5 4 8 8 O 1.21287 * 120.00148 * 352.05011 * 6 5 4 9 9 C 1.46902 * 110.99952 * 264.46809 * 4 2 1 10 10 C 1.53006 * 109.47237 * 84.16528 * 9 4 2 11 11 C 1.50701 * 115.54699 * 66.02457 * 10 9 4 12 12 H 1.08002 * 119.99707 * 157.89000 * 11 10 9 13 13 C 1.37878 * 120.00039 * 337.89078 * 11 10 9 14 14 N 1.31511 * 120.00014 * 41.81773 * 13 11 10 15 15 Si 1.86806 * 119.99729 * 221.81306 * 13 11 10 16 16 H 1.48498 * 109.47043 * 60.00685 * 15 13 11 17 17 H 1.48498 * 109.46574 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47080 * 300.00352 * 15 13 11 19 19 C 1.52998 * 117.49847 * 280.35995 * 10 9 4 20 20 C 1.52999 * 117.50035 * 211.69633 * 10 9 4 21 21 H 1.09002 * 109.46788 * 298.12721 * 1 2 3 22 22 H 1.09006 * 109.46696 * 58.12007 * 1 2 3 23 23 H 1.08995 * 109.47448 * 178.12236 * 1 2 3 24 24 H 1.09006 * 109.46743 * 239.99282 * 2 1 3 25 25 H 1.08998 * 109.47017 * 179.80443 * 3 2 1 26 26 H 1.08998 * 109.47060 * 299.80035 * 3 2 1 27 27 H 1.08994 * 109.46842 * 59.80454 * 3 2 1 28 28 H 1.08994 * 109.47390 * 166.53660 * 5 4 2 29 29 H 1.08994 * 109.47258 * 46.53080 * 5 4 2 30 30 H 0.97007 * 120.00221 * 0.02562 * 7 6 5 31 31 H 0.96997 * 120.00287 * 179.97438 * 7 6 5 32 32 H 1.08991 * 109.47445 * 204.17083 * 9 4 2 33 33 H 1.08999 * 109.46774 * 324.16858 * 9 4 2 34 34 H 0.97001 * 120.00006 * 184.64276 * 14 13 11 35 35 H 1.09002 * 117.50260 * 359.97438 * 19 10 9 36 36 H 1.08995 * 117.50026 * 145.02131 * 19 10 9 37 37 H 1.08997 * 117.49982 * 214.98070 * 20 10 9 38 38 H 1.09002 * 117.49513 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.1930 -1.5196 0.8877 6 6 2.7573 -2.7403 0.1189 7 7 3.6797 -3.5651 -0.4152 8 8 1.5765 -2.9805 -0.0193 9 6 2.3198 0.2634 2.2737 10 6 1.0364 0.5877 3.0411 11 6 0.4336 -0.5578 3.8128 12 1 -0.2312 -0.3605 4.6408 13 6 0.7307 -1.8576 3.4618 14 7 1.9631 -2.1871 3.1421 15 14 -0.6172 -3.1507 3.4405 16 1 -1.6718 -2.7506 2.4747 17 1 -0.0425 -4.4580 3.0332 18 1 -1.2086 -3.2716 4.7973 19 6 0.0760 1.6009 2.4152 20 6 0.9069 1.9893 3.6407 21 1 -0.3633 0.4845 0.9063 22 1 -0.3633 0.5428 -0.8727 23 1 -0.3634 -1.0270 -0.0337 24 1 1.8933 -0.5140 -0.8900 25 1 3.1301 1.4423 0.0035 26 1 1.6797 1.9552 -0.8918 27 1 1.6740 1.9572 0.8882 28 1 3.6771 -1.8276 1.8144 29 1 3.8948 -0.9425 0.2857 30 1 4.6241 -3.3733 -0.3044 31 1 3.3992 -4.3510 -0.9097 32 1 3.0501 -0.1731 2.9550 33 1 2.7264 1.1782 1.8427 34 1 2.1600 -3.0843 2.8305 35 1 0.3585 2.0368 1.4569 36 1 -0.9919 1.4393 2.5620 37 1 0.3854 2.0830 4.5932 38 1 1.7362 2.6802 3.4889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:34 Heat of formation + Delta-G solvation = 43.262077 kcal Electronic energy + Delta-G solvation = -19363.122511 eV Core-core repulsion = 16629.777237 eV Total energy + Delta-G solvation = -2733.345274 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.22768 -37.82348 -34.84455 -33.04697 -32.38344 -30.80537 -27.48767 -26.38257 -25.07600 -23.64580 -21.48664 -20.28334 -19.32370 -18.10080 -16.83193 -16.27617 -15.66245 -15.05337 -14.76653 -14.38066 -13.75901 -13.54061 -13.25254 -12.65747 -12.46839 -12.23994 -11.75491 -11.62683 -11.32831 -10.73779 -10.69891 -10.48005 -10.33449 -10.27452 -10.18709 -9.90741 -9.64417 -9.19491 -9.15776 -9.13215 -8.52372 -8.40382 -7.74932 -6.75034 -6.07648 -3.64502 3.40814 3.55887 3.66521 3.74356 4.03163 4.71871 4.85379 5.32354 5.59959 5.64704 5.74592 5.78425 5.90764 5.98936 6.21691 6.24388 6.35991 6.49663 6.53559 6.63156 6.64737 6.75760 6.80096 6.86983 6.97791 7.14672 7.23689 7.25296 7.41825 7.50356 7.73275 7.81669 8.07422 8.33489 8.42743 8.74319 8.98818 9.20995 9.83904 11.01976 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.015178 C = 0.010416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.710949 B = 1844.376410 C = 2687.428162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 C -0.194 4.194 4 N -0.462 5.462 5 C 0.053 3.947 6 C 0.514 3.486 7 N -0.873 5.873 8 O -0.517 6.517 9 C 0.109 3.891 10 C 0.077 3.923 11 C -0.535 4.535 12 H 0.054 0.946 13 C 0.141 3.859 14 N -0.805 5.805 15 Si 0.855 3.145 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.289 1.289 19 C -0.234 4.234 20 C -0.223 4.223 21 H 0.094 0.906 22 H 0.028 0.972 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.027 0.973 30 H 0.394 0.606 31 H 0.391 0.609 32 H 0.082 0.918 33 H 0.014 0.986 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 1.710 -6.837 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 C -0.252 4.252 4 N -0.185 5.185 5 C -0.078 4.078 6 C 0.299 3.701 7 N -0.438 5.438 8 O -0.390 6.390 9 C -0.017 4.017 10 C 0.076 3.924 11 C -0.568 4.568 12 H 0.072 0.928 13 C -0.070 4.070 14 N -0.435 5.435 15 Si 0.682 3.318 16 H -0.203 1.203 17 H -0.221 1.221 18 H -0.216 1.216 19 C -0.271 4.271 20 C -0.261 4.261 21 H 0.112 0.888 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.045 0.955 30 H 0.221 0.779 31 H 0.220 0.780 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.772 1.252 -6.639 8.886 hybrid contribution 0.170 -0.508 -0.760 0.930 sum 5.942 0.744 -7.399 9.519 Atomic orbital electron populations 1.22148 0.94804 1.02360 1.01748 1.21600 0.96893 0.91135 0.92685 1.22826 0.99931 0.99829 1.02618 1.61567 1.29659 1.22356 1.04879 1.21940 0.93349 0.92449 1.00104 1.21068 0.86010 0.84975 0.78033 1.44006 1.09897 1.29856 1.60081 1.90710 1.17238 1.73659 1.57367 1.21691 0.97459 0.90967 0.91621 1.18914 0.91890 0.86790 0.94801 1.19956 1.30111 0.88944 1.17830 0.92827 1.24311 0.93329 0.97019 0.92327 1.70243 1.18068 1.18969 1.36218 0.87319 0.85901 0.81315 0.77309 1.20266 1.22109 1.21554 1.23479 0.97957 1.10952 0.94716 1.22983 1.02677 1.03640 0.96849 0.88810 0.95345 0.92478 0.93582 0.93918 0.93695 0.89332 0.85886 0.95530 0.77933 0.77954 0.89966 0.96827 0.93535 0.90181 0.90891 0.90957 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.06 37.16 0.34 -2.90 16 2 C 0.09 1.70 2.25 -67.71 -0.15 1.55 16 3 C -0.19 -3.34 7.44 37.16 0.28 -3.07 16 4 N -0.46 -9.92 1.97 -228.08 -0.45 -10.36 16 5 C 0.05 1.00 4.13 -4.98 -0.02 0.98 16 6 C 0.51 9.68 7.04 -10.99 -0.08 9.60 16 7 N -0.87 -11.57 8.87 31.22 0.28 -11.29 16 8 O -0.52 -12.21 16.76 5.55 0.09 -12.11 16 9 C 0.11 2.40 3.79 -3.82 -0.01 2.39 16 10 C 0.08 1.86 1.96 -155.66 -0.30 1.55 16 11 C -0.54 -14.69 8.92 -34.44 -0.31 -15.00 16 12 H 0.05 1.53 8.06 -52.49 -0.42 1.11 16 13 C 0.14 3.84 4.64 -17.82 -0.08 3.76 16 14 N -0.80 -20.76 7.53 55.43 0.42 -20.34 16 15 Si 0.85 22.46 29.69 -169.99 -5.05 17.42 16 16 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 17 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 18 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 19 C -0.23 -5.12 6.24 -26.69 -0.17 -5.28 16 20 C -0.22 -4.87 9.92 -26.69 -0.26 -5.13 16 21 H 0.09 2.09 3.50 -51.93 -0.18 1.91 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 24 H 0.05 0.91 7.07 -51.93 -0.37 0.54 16 25 H 0.04 0.68 7.74 -51.93 -0.40 0.28 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.63 3.14 -51.93 -0.16 1.46 16 28 H 0.12 2.38 6.17 -51.93 -0.32 2.06 16 29 H 0.03 0.43 8.03 -51.93 -0.42 0.01 16 30 H 0.39 3.86 8.83 -40.82 -0.36 3.50 16 31 H 0.39 4.71 8.93 -40.82 -0.36 4.35 16 32 H 0.08 1.93 6.57 -51.93 -0.34 1.58 16 33 H 0.01 0.28 4.63 -51.93 -0.24 0.04 16 34 H 0.25 6.55 7.76 -40.82 -0.32 6.24 16 35 H 0.08 1.62 4.19 -51.93 -0.22 1.40 16 36 H 0.07 1.66 8.06 -51.93 -0.42 1.24 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -30.10 284.91 -6.63 -36.73 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.44 Total: 7.22 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.78 Total: -11.54 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.25 Total: -42.00 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.05 Total: 17.42 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.10 -6.63 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.993 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds