Wall clock time and date at job start Sun Mar 29 2020 22:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.52027 * 2 1 4 4 C 1.53031 * 109.50139 * 120.07842 * 2 1 3 5 5 C 1.53036 * 109.54003 * 181.32062 * 4 2 1 6 6 C 1.53192 * 109.34136 * 298.61838 * 5 4 2 7 7 N 1.46999 * 108.73471 * 54.61821 * 6 5 4 8 8 C 1.34782 * 120.60791 * 126.38793 * 7 6 5 9 9 O 1.21593 * 119.99499 * 174.98824 * 8 7 6 10 10 N 1.34771 * 120.00512 * 354.99168 * 8 7 6 11 11 C 1.46496 * 120.00025 * 185.07036 * 10 8 7 12 12 C 1.53005 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46890 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00182 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99604 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00140 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46963 * 60.00004 * 17 15 13 19 19 H 1.48494 * 109.47638 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47108 * 300.00476 * 17 15 13 21 21 C 1.46924 * 118.75916 * 306.41337 * 7 6 5 22 22 H 1.08996 * 109.47125 * 299.91571 * 1 2 3 23 23 H 1.08998 * 109.47367 * 59.91989 * 1 2 3 24 24 H 1.09009 * 109.46800 * 179.91710 * 1 2 3 25 25 H 1.09002 * 109.46221 * 61.29491 * 4 2 1 26 26 H 1.09003 * 109.44887 * 301.33632 * 4 2 1 27 27 H 1.09000 * 109.49981 * 58.58677 * 5 4 2 28 28 H 1.09007 * 109.49796 * 178.65116 * 5 4 2 29 29 H 1.08997 * 109.59113 * 174.43384 * 6 5 4 30 30 H 1.09004 * 109.58439 * 294.87047 * 6 5 4 31 31 H 0.97001 * 119.99789 * 5.07347 * 10 8 7 32 32 H 1.08996 * 109.47404 * 299.99764 * 11 10 8 33 33 H 1.09006 * 109.47359 * 60.00430 * 11 10 8 34 34 H 1.09004 * 109.47179 * 300.00367 * 12 11 10 35 35 H 1.08997 * 109.46967 * 60.00118 * 12 11 10 36 36 H 0.97008 * 119.99562 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.58467 * 293.81802 * 21 7 6 38 38 H 1.08998 * 109.70299 * 173.46625 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7230 1.2483 5 6 3.5709 -0.6948 1.2659 6 6 4.1061 -1.4267 0.0312 7 7 3.5046 -0.8289 -1.1696 8 6 4.2812 -0.3853 -2.1779 9 8 3.7714 0.0230 -3.2035 10 7 5.6228 -0.3945 -2.0496 11 6 6.4629 0.1893 -3.0981 12 6 7.9358 0.0499 -2.7080 13 6 8.8001 0.6511 -3.7864 14 1 8.3444 1.0891 -4.6621 15 6 10.1725 0.6418 -3.6550 16 7 10.7274 0.1088 -2.5883 17 14 11.2439 1.3862 -4.9919 18 1 10.9085 2.8241 -5.1517 19 1 12.6735 1.2500 -4.6139 20 1 11.0014 0.6761 -6.2733 21 6 2.0414 -0.7237 -1.2496 22 1 -0.3633 0.5125 0.8907 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3633 -1.0278 -0.0015 25 1 1.6968 -1.7572 1.2353 26 1 1.6582 -0.2242 2.1387 27 1 3.9159 0.3391 1.2540 28 1 3.9335 -1.1889 2.1674 29 1 5.1904 -1.3244 -0.0129 30 1 3.8383 -2.4818 0.0872 31 1 6.0320 -0.7877 -1.2629 32 1 6.2849 -0.3319 -4.0386 33 1 6.2169 1.2448 -3.2153 34 1 8.1136 0.5715 -1.7675 35 1 8.1822 -1.0053 -2.5905 36 1 11.6930 0.1027 -2.4958 37 1 1.6054 -1.7216 -1.2981 38 1 1.7616 -0.1592 -2.1391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091973391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:26 Heat of formation + Delta-G solvation = -70.623356 kcal Electronic energy + Delta-G solvation = -17359.167592 eV Core-core repulsion = 14620.883875 eV Total energy + Delta-G solvation = -2738.283717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45571 -38.86096 -36.63432 -35.14116 -34.42129 -32.73449 -31.41033 -27.80027 -27.00575 -25.74135 -23.23698 -22.97866 -21.58186 -20.50312 -19.10845 -18.49840 -17.24113 -16.74655 -16.51362 -15.90862 -15.41815 -15.40736 -15.28447 -14.91223 -14.29459 -14.27553 -14.01594 -13.50924 -13.24261 -12.94642 -12.89372 -12.68544 -12.52728 -12.24595 -12.01929 -11.82846 -11.67476 -11.64461 -11.44550 -11.27584 -11.10972 -10.60191 -10.17908 -9.45078 -8.23993 -6.34605 1.41989 1.44737 1.52395 1.67255 2.10746 2.41070 2.99235 3.10657 3.78195 3.87287 3.90899 4.07858 4.31903 4.41066 4.44352 4.49278 4.56995 4.68590 4.82213 4.83682 4.84227 4.91219 4.94083 5.10199 5.19768 5.26771 5.30311 5.34519 5.47880 5.50737 5.57347 5.61654 5.78332 5.94745 6.16570 6.77779 6.97150 7.34628 7.53807 8.87822 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050079 B = 0.004272 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.987396 B = 6553.304956 C = 6922.704531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.054 0.946 4 C -0.108 4.108 5 C -0.132 4.132 6 C 0.103 3.897 7 N -0.628 5.628 8 C 0.697 3.303 9 O -0.641 6.641 10 N -0.735 5.735 11 C 0.159 3.841 12 C 0.026 3.974 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.269 1.269 21 C 0.130 3.870 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.404 0.596 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.080 0.920 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -3.933 11.012 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.072 0.928 4 C -0.145 4.145 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.365 5.365 8 C 0.398 3.602 9 O -0.523 6.523 10 N -0.392 5.392 11 C 0.035 3.965 12 C -0.012 4.012 13 C -0.587 4.587 14 H 0.077 0.923 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.194 1.194 21 C 0.008 3.992 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.242 0.758 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.601 -3.669 10.363 20.753 hybrid contribution 1.098 0.286 -0.438 1.217 sum -16.503 -3.383 9.925 19.553 Atomic orbital electron populations 1.21726 0.92782 1.02878 1.02322 1.21499 0.97114 0.99028 0.94738 0.92784 1.21565 0.94400 1.01510 0.97068 1.21925 0.96875 1.00702 0.97545 1.21931 0.97921 0.98236 0.83850 1.47391 1.06887 1.64274 1.17949 1.16144 0.81878 0.78649 0.83524 1.90831 1.74194 1.56751 1.30568 1.45421 1.04214 1.64192 1.25374 1.21091 0.90220 0.96098 0.89096 1.19112 0.89209 0.96386 0.96466 1.21428 0.92137 1.39192 1.05964 0.92320 1.25866 0.99440 0.95556 0.98182 1.70054 1.11456 1.45701 1.29327 0.85488 0.77276 0.79143 0.79078 1.19335 1.20454 1.19365 1.21636 0.77358 1.01250 0.98972 0.91179 0.93017 0.91252 0.90277 0.90269 0.92938 0.88226 0.90573 0.89239 0.75792 0.93928 0.93967 0.97331 0.97344 0.92489 0.90185 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.20 71.98 0.66 -1.20 16 2 C -0.10 -1.87 2.87 -10.72 -0.03 -1.90 16 3 H 0.05 1.18 8.14 -2.38 -0.02 1.17 16 4 C -0.11 -1.47 5.17 30.62 0.16 -1.31 16 5 C -0.13 -2.09 6.08 30.67 0.19 -1.91 16 6 C 0.10 2.06 6.44 86.35 0.56 2.62 16 7 N -0.63 -17.58 2.97 -836.71 -2.49 -20.07 16 8 C 0.70 26.62 8.30 179.05 1.49 28.10 16 9 O -0.64 -29.80 15.79 -4.01 -0.06 -29.86 16 10 N -0.74 -28.13 5.47 -478.53 -2.62 -30.75 16 11 C 0.16 7.29 5.62 86.38 0.49 7.78 16 12 C 0.03 1.34 5.09 29.85 0.15 1.49 16 13 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 17 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.13 3.09 5.70 86.36 0.49 3.59 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.60 5.57 -2.39 -0.01 1.58 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.40 13.36 5.93 -92.71 -0.55 12.81 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.90 7.04 -2.39 -0.02 1.88 16 Total: -1.00 -69.58 305.98 2.46 -67.12 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.48 Total: 14.70 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.84 Total: 7.16 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.82 Total: -105.16 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.86 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.58 2.46 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091973391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.500 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds