Wall clock time and date at job start Sun Mar 29 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.50134 * 2 1 4 4 C 1.53033 * 109.50378 * 120.07565 * 2 1 3 5 5 N 1.46847 * 109.52502 * 179.12092 * 4 2 1 6 6 C 1.46894 * 111.00274 * 174.16202 * 5 4 2 7 7 C 1.50692 * 109.47105 * 293.60885 * 6 5 4 8 8 O 1.21292 * 120.00075 * 353.73311 * 7 6 5 9 9 N 1.34783 * 120.00088 * 173.73086 * 7 6 5 10 10 C 1.37102 * 120.00190 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99894 * 0.02562 * 10 9 7 12 12 C 1.38939 * 119.99904 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00357 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46661 * 269.99909 * 14 12 10 16 16 H 1.48495 * 109.47104 * 29.99520 * 14 12 10 17 17 H 1.48497 * 109.47066 * 149.99959 * 14 12 10 18 18 C 1.46855 * 111.19603 * 298.26338 * 5 4 2 19 19 C 1.53033 * 109.52725 * 61.73424 * 18 5 4 20 20 C 1.53116 * 109.28044 * 300.82651 * 19 18 5 21 21 H 1.09004 * 109.52145 * 297.74483 * 20 19 18 22 22 C 1.53000 * 109.57672 * 177.58865 * 20 19 18 23 23 H 1.09001 * 109.46769 * 299.92098 * 1 2 3 24 24 H 1.08995 * 109.47648 * 59.92428 * 1 2 3 25 25 H 1.09003 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46293 * 59.10527 * 4 2 1 27 27 H 1.08997 * 109.46883 * 299.13941 * 4 2 1 28 28 H 1.09002 * 109.47311 * 173.60611 * 6 5 4 29 29 H 1.09002 * 109.47361 * 53.61352 * 6 5 4 30 30 H 0.97000 * 119.99883 * 0.02562 * 9 7 6 31 31 H 0.97000 * 120.00396 * 180.02562 * 13 12 10 32 32 H 1.08995 * 109.46324 * 181.76054 * 18 5 4 33 33 H 1.09005 * 109.45725 * 301.72047 * 18 5 4 34 34 H 1.09002 * 109.50422 * 180.87790 * 19 18 5 35 35 H 1.09001 * 109.53358 * 60.78494 * 19 18 5 36 36 H 1.09007 * 109.46975 * 300.28481 * 22 20 19 37 37 H 1.09004 * 109.47122 * 60.27978 * 22 20 19 38 38 H 1.08996 * 109.47340 * 180.28270 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7229 1.2483 5 7 3.5093 -0.7416 1.2382 6 6 4.0373 -1.3048 2.4879 7 6 3.7057 -0.3838 3.6335 8 8 3.1917 0.6932 3.4166 9 7 3.9803 -0.7567 4.8993 10 6 3.6791 0.0815 5.9416 11 1 3.2214 1.0404 5.7484 12 6 3.9627 -0.3028 7.2463 13 7 4.5191 -1.4698 7.4814 14 14 3.5517 0.8389 8.6666 15 1 4.7106 1.7263 8.9395 16 1 2.3691 1.6642 8.3120 17 1 3.2486 0.0340 9.8771 18 6 4.0230 -1.4729 0.0729 19 6 3.5711 -0.7724 -1.2105 20 6 2.0412 -0.7243 -1.2485 21 1 1.6452 -1.7396 -1.2683 22 6 1.5828 0.0278 -2.4995 23 1 -0.3633 0.5126 0.8907 24 1 -0.3634 0.5150 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6648 -1.7459 1.2551 27 1 1.6906 -0.2015 2.1390 28 1 5.1192 -1.4123 2.4095 29 1 3.5871 -2.2817 2.6649 30 1 4.3917 -1.6179 5.0727 31 1 4.7168 -1.7383 8.3923 32 1 5.1121 -1.4962 0.1099 33 1 3.6375 -2.4924 0.0852 34 1 3.9395 -1.3242 -2.0754 35 1 3.9677 0.2427 -1.2307 36 1 1.9811 1.0423 -2.4799 37 1 1.9472 -0.4884 -3.3877 38 1 0.4937 0.0654 -2.5222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122650591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:18 Heat of formation + Delta-G solvation = -51.937595 kcal Electronic energy + Delta-G solvation = -17728.575054 eV Core-core repulsion = 14991.101612 eV Total energy + Delta-G solvation = -2737.473441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.40661 -37.78231 -34.71273 -33.73901 -31.96008 -31.18534 -29.01245 -26.84863 -25.68561 -24.01728 -22.05986 -21.21379 -19.43049 -19.09854 -17.80202 -15.96084 -15.27614 -15.09332 -14.58372 -14.47203 -14.21787 -13.90918 -13.62951 -13.47553 -12.92102 -12.50831 -12.15079 -11.93923 -11.90895 -11.63566 -11.55802 -11.42936 -11.19379 -10.92899 -10.83403 -10.40729 -10.36895 -10.18889 -10.01362 -9.93447 -9.41979 -8.35900 -7.92368 -7.76000 -6.37894 -3.78500 3.20381 3.28560 3.34487 3.96570 4.06323 4.29099 4.83042 4.85116 4.91889 5.08911 5.28566 5.33882 5.49040 5.54513 5.58710 5.64897 5.70838 5.75887 5.80041 5.86421 5.90943 5.99535 6.04265 6.06672 6.15499 6.22520 6.32828 6.34560 6.41280 6.59927 6.67175 7.41964 7.53895 7.58894 8.11075 8.66886 9.22522 9.59531 10.11942 10.80085 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044895 B = 0.005051 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.525427 B = 5542.441975 C = 5926.093466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 H 0.079 0.921 4 C 0.061 3.939 5 N -0.515 5.515 6 C 0.046 3.954 7 C 0.444 3.556 8 O -0.575 6.575 9 N -0.567 5.567 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.270 1.270 17 H -0.284 1.284 18 C 0.055 3.945 19 C -0.109 4.109 20 C -0.089 4.089 21 H 0.063 0.937 22 C -0.146 4.146 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.391 0.609 31 H 0.271 0.729 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -2.430 -15.085 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.066 4.066 5 N -0.239 5.239 6 C -0.085 4.085 7 C 0.230 3.770 8 O -0.459 6.459 9 N -0.204 5.204 10 C -0.427 4.427 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.194 1.194 17 H -0.210 1.210 18 C -0.073 4.073 19 C -0.147 4.147 20 C -0.108 4.108 21 H 0.081 0.919 22 C -0.203 4.203 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.225 0.775 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.459 -1.306 -15.076 15.523 hybrid contribution -0.073 -0.984 1.013 1.414 sum -3.532 -2.289 -14.063 14.679 Atomic orbital electron populations 1.21831 0.95462 1.01382 1.01728 1.21149 0.94743 1.00569 0.93514 0.90213 1.22221 0.86748 0.97963 0.99690 1.61474 1.08554 1.53306 1.00615 1.21843 1.00674 0.95875 0.90122 1.19781 0.85073 0.88617 0.83551 1.90502 1.47455 1.23834 1.84098 1.41890 1.54803 1.19221 1.04494 1.19693 1.37643 1.00860 0.84488 0.87959 1.25241 0.97154 0.96840 0.98731 1.69612 1.42992 1.20077 1.21833 0.85871 0.78981 0.79529 0.79982 1.20427 1.19449 1.20983 1.22100 0.99732 0.94678 0.90823 1.21616 0.95301 1.01608 0.96173 1.21231 0.95518 0.99130 0.94923 0.91904 1.21856 1.01052 1.00416 0.96975 0.92416 0.92570 0.93183 0.96223 0.88603 0.89393 0.93771 0.77546 0.91942 0.91011 0.95518 0.91986 0.91029 0.92641 0.93186 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.90 37.16 0.33 -1.46 16 2 C -0.08 -1.14 2.38 -90.54 -0.22 -1.36 16 3 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.06 1.05 4.40 -3.84 -0.02 1.03 16 5 N -0.52 -9.04 4.35 -236.12 -1.03 -10.06 16 6 C 0.05 0.86 5.45 -4.98 -0.03 0.84 16 7 C 0.44 10.74 7.31 -10.99 -0.08 10.66 16 8 O -0.58 -15.79 14.29 5.55 0.08 -15.71 16 9 N -0.57 -14.64 5.29 -10.97 -0.06 -14.69 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.88 13.05 55.49 0.72 -24.16 16 14 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.05 0.75 5.46 -3.83 -0.02 0.73 16 19 C -0.11 -1.31 5.38 -26.65 -0.14 -1.45 16 20 C -0.09 -1.06 2.29 -90.50 -0.21 -1.26 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -1.44 8.91 37.16 0.33 -1.11 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.59 6.51 -51.93 -0.34 0.25 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.10 1.99 6.06 -51.93 -0.31 1.67 16 28 H 0.09 1.49 7.98 -51.93 -0.41 1.08 16 29 H 0.04 0.77 8.12 -51.93 -0.42 0.34 16 30 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.52 6.50 -51.93 -0.34 0.18 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -30.47 301.46 -7.35 -37.82 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.30 Total: 7.43 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.29 Total: -1.43 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.36 Total: -48.91 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.47 -7.35 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122650591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.115 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds