Wall clock time and date at job start Sun Mar 29 2020 22:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.50134 * 2 1 4 4 C 1.53033 * 109.50378 * 120.07565 * 2 1 3 5 5 N 1.46847 * 109.52502 * 179.12092 * 4 2 1 6 6 C 1.46894 * 111.00274 * 174.16202 * 5 4 2 7 7 C 1.50692 * 109.47105 * 293.60885 * 6 5 4 8 8 O 1.21292 * 120.00075 * 353.73311 * 7 6 5 9 9 N 1.34783 * 120.00088 * 173.73086 * 7 6 5 10 10 C 1.37102 * 120.00190 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99894 * 0.02562 * 10 9 7 12 12 C 1.38939 * 119.99904 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00357 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46661 * 269.99909 * 14 12 10 16 16 H 1.48495 * 109.47104 * 29.99520 * 14 12 10 17 17 H 1.48497 * 109.47066 * 149.99959 * 14 12 10 18 18 C 1.46855 * 111.19603 * 298.26338 * 5 4 2 19 19 C 1.53033 * 109.52725 * 61.73424 * 18 5 4 20 20 C 1.53116 * 109.28044 * 300.82651 * 19 18 5 21 21 H 1.09004 * 109.52145 * 297.74483 * 20 19 18 22 22 C 1.53000 * 109.57672 * 177.58865 * 20 19 18 23 23 H 1.09001 * 109.46769 * 299.92098 * 1 2 3 24 24 H 1.08995 * 109.47648 * 59.92428 * 1 2 3 25 25 H 1.09003 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46293 * 59.10527 * 4 2 1 27 27 H 1.08997 * 109.46883 * 299.13941 * 4 2 1 28 28 H 1.09002 * 109.47311 * 173.60611 * 6 5 4 29 29 H 1.09002 * 109.47361 * 53.61352 * 6 5 4 30 30 H 0.97000 * 119.99883 * 0.02562 * 9 7 6 31 31 H 0.97000 * 120.00396 * 180.02562 * 13 12 10 32 32 H 1.08995 * 109.46324 * 181.76054 * 18 5 4 33 33 H 1.09005 * 109.45725 * 301.72047 * 18 5 4 34 34 H 1.09002 * 109.50422 * 180.87790 * 19 18 5 35 35 H 1.09001 * 109.53358 * 60.78494 * 19 18 5 36 36 H 1.09007 * 109.46975 * 300.28481 * 22 20 19 37 37 H 1.09004 * 109.47122 * 60.27978 * 22 20 19 38 38 H 1.08996 * 109.47340 * 180.28270 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7229 1.2483 5 7 3.5093 -0.7416 1.2382 6 6 4.0373 -1.3048 2.4879 7 6 3.7057 -0.3838 3.6335 8 8 3.1917 0.6932 3.4166 9 7 3.9803 -0.7567 4.8993 10 6 3.6791 0.0815 5.9416 11 1 3.2214 1.0404 5.7484 12 6 3.9627 -0.3028 7.2463 13 7 4.5191 -1.4698 7.4814 14 14 3.5517 0.8389 8.6666 15 1 4.7106 1.7263 8.9395 16 1 2.3691 1.6642 8.3120 17 1 3.2486 0.0340 9.8771 18 6 4.0230 -1.4729 0.0729 19 6 3.5711 -0.7724 -1.2105 20 6 2.0412 -0.7243 -1.2485 21 1 1.6452 -1.7396 -1.2683 22 6 1.5828 0.0278 -2.4995 23 1 -0.3633 0.5126 0.8907 24 1 -0.3634 0.5150 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6648 -1.7459 1.2551 27 1 1.6906 -0.2015 2.1390 28 1 5.1192 -1.4123 2.4095 29 1 3.5871 -2.2817 2.6649 30 1 4.3917 -1.6179 5.0727 31 1 4.7168 -1.7383 8.3923 32 1 5.1121 -1.4962 0.1099 33 1 3.6375 -2.4924 0.0852 34 1 3.9395 -1.3242 -2.0754 35 1 3.9677 0.2427 -1.2307 36 1 1.9811 1.0423 -2.4799 37 1 1.9472 -0.4884 -3.3877 38 1 0.4937 0.0654 -2.5222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122650591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:17 Heat of formation + Delta-G solvation = -72.753143 kcal Electronic energy + Delta-G solvation = -17729.477684 eV Core-core repulsion = 14991.101612 eV Total energy + Delta-G solvation = -2738.376071 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79406 -39.48399 -36.19792 -35.57698 -33.26502 -33.02984 -30.25268 -28.13524 -27.18131 -25.66512 -23.17189 -22.38573 -20.99061 -20.49913 -19.86727 -17.75113 -16.70343 -16.50762 -16.45003 -15.68137 -15.48655 -15.31206 -15.12539 -15.02783 -14.13719 -13.81661 -13.60742 -13.45771 -13.17398 -12.93812 -12.79521 -12.67089 -12.57781 -12.42223 -12.31889 -12.12371 -11.88430 -11.50091 -11.45822 -11.05018 -10.99684 -10.25950 -9.99816 -9.15901 -8.46469 -5.95290 1.37652 1.40912 1.53895 2.05771 2.28539 2.79230 3.20211 3.38332 3.81365 3.87938 3.93990 4.19067 4.31846 4.34134 4.45987 4.52088 4.54149 4.63994 4.68198 4.71993 4.82739 4.89134 4.92095 5.00572 5.13148 5.14095 5.23996 5.29324 5.39553 5.40724 5.48600 5.62428 5.92843 6.13502 6.30207 6.61393 7.13272 7.56691 8.13080 8.71180 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044895 B = 0.005051 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.525427 B = 5542.441975 C = 5926.093466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.055 0.945 4 C 0.064 3.936 5 N -0.536 5.536 6 C 0.057 3.943 7 C 0.441 3.559 8 O -0.614 6.614 9 N -0.576 5.576 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.922 5.922 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.274 1.274 17 H -0.270 1.270 18 C 0.053 3.947 19 C -0.107 4.107 20 C -0.085 4.085 21 H 0.072 0.928 22 C -0.141 4.141 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.278 0.722 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 -3.416 -16.412 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.064 4.064 5 N -0.261 5.261 6 C -0.074 4.074 7 C 0.228 3.772 8 O -0.499 6.499 9 N -0.214 5.214 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.196 1.196 16 H -0.198 1.198 17 H -0.194 1.194 18 C -0.075 4.075 19 C -0.144 4.144 20 C -0.103 4.103 21 H 0.090 0.910 22 C -0.199 4.199 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.346 -2.317 -16.420 16.917 hybrid contribution -0.097 -0.681 1.397 1.557 sum -3.443 -2.999 -15.024 15.702 Atomic orbital electron populations 1.21807 0.94124 1.02135 1.01917 1.21116 0.95889 0.99092 0.93593 0.92673 1.22118 0.86914 0.98070 0.99249 1.61464 1.08732 1.54698 1.01219 1.21726 1.02132 0.94855 0.88670 1.20794 0.83294 0.88796 0.84291 1.90476 1.48750 1.25914 1.84804 1.41956 1.55369 1.19180 1.04860 1.19649 1.39556 1.00900 0.86096 0.90449 1.26026 0.96384 0.98303 1.00499 1.69673 1.42832 1.20988 1.22803 0.84932 0.78668 0.77750 0.77004 1.19599 1.19836 1.19447 1.22245 1.00383 0.95062 0.89761 1.21638 0.95380 1.01139 0.96260 1.21208 0.95429 0.99420 0.94271 0.90975 1.21818 1.01563 0.99979 0.96502 0.94148 0.90486 0.92097 0.95368 0.93257 0.87203 0.92016 0.77090 0.91305 0.89920 0.94201 0.89018 0.92319 0.93242 0.91373 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.90 71.98 0.64 -2.74 16 2 C -0.08 -2.18 2.38 -10.74 -0.03 -2.20 16 3 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.06 2.23 4.40 86.32 0.38 2.61 16 5 N -0.54 -18.54 4.35 -900.96 -3.92 -22.46 16 6 C 0.06 2.12 5.45 85.56 0.47 2.58 16 7 C 0.44 21.93 7.31 87.65 0.64 22.57 16 8 O -0.61 -35.27 14.29 -3.07 -0.04 -35.31 16 9 N -0.58 -30.55 5.29 -306.99 -1.62 -32.17 16 10 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 11 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 12 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 13 N -0.92 -50.60 13.05 21.66 0.28 -50.31 16 14 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.05 1.32 5.46 86.32 0.47 1.79 16 19 C -0.11 -2.27 5.38 30.64 0.16 -2.11 16 20 C -0.08 -1.79 2.29 -10.72 -0.02 -1.82 16 21 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 22 C -0.14 -2.39 8.91 71.98 0.64 -1.75 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.49 6.51 -2.39 -0.02 1.48 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 2.15 6.06 -2.39 -0.01 2.14 16 28 H 0.11 3.57 7.98 -2.39 -0.02 3.55 16 29 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 30 H 0.40 19.91 7.90 -92.71 -0.73 19.17 16 31 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.08 1.89 8.01 -2.39 -0.02 1.87 16 33 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.98 6.50 -2.39 -0.02 0.96 16 Total: -1.00 -67.34 301.46 1.66 -65.67 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.30 Total: 28.68 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 4.64 Total: 0.19 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -5.26 Total: -104.94 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.04 Total: -35.31 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.34 1.66 -65.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122650591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.081 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds