Wall clock time and date at job start Sun Mar 29 2020 22:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47055 * 2 1 4 4 C 1.50707 * 109.46976 * 119.99797 * 2 1 3 5 5 O 1.21292 * 119.99640 * 104.03192 * 4 2 1 6 6 N 1.34778 * 119.99891 * 284.03474 * 4 2 1 7 7 C 1.37095 * 119.99707 * 179.97438 * 6 4 2 8 8 H 1.08000 * 120.00234 * 0.02562 * 7 6 4 9 9 C 1.38948 * 119.99977 * 179.97438 * 7 6 4 10 10 N 1.31415 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00333 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46874 * 90.00132 * 11 9 7 13 13 H 1.48498 * 109.47089 * 210.00296 * 11 9 7 14 14 H 1.48497 * 109.46844 * 330.00593 * 11 9 7 15 15 N 1.46899 * 109.47015 * 239.99764 * 2 1 3 16 16 C 1.47841 * 110.99872 * 49.62645 * 15 2 1 17 17 H 1.09002 * 110.37681 * 27.53718 * 16 15 2 18 18 C 1.53002 * 110.37451 * 265.18955 * 16 15 2 19 19 C 1.54912 * 104.79399 * 146.36536 * 16 15 2 20 20 C 1.55147 * 101.65208 * 322.92785 * 19 16 15 21 21 C 1.47442 * 110.99933 * 170.47294 * 15 2 1 22 22 H 1.08996 * 109.89003 * 117.33649 * 21 15 2 23 23 C 1.53005 * 109.88637 * 356.14633 * 21 15 2 24 24 H 1.08999 * 109.47462 * 174.05003 * 1 2 3 25 25 H 1.09000 * 109.47184 * 294.04787 * 1 2 3 26 26 H 1.09000 * 109.46865 * 54.05026 * 1 2 3 27 27 H 0.97003 * 120.00178 * 0.02562 * 6 4 2 28 28 H 0.97005 * 120.00261 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.46594 * 66.12777 * 18 16 15 30 30 H 1.09008 * 109.46863 * 186.12645 * 18 16 15 31 31 H 1.09001 * 109.47007 * 306.12929 * 18 16 15 32 32 H 1.09003 * 110.98941 * 204.84338 * 19 16 15 33 33 H 1.08991 * 111.02658 * 81.03547 * 19 16 15 34 34 H 1.08997 * 110.70548 * 277.27755 * 20 19 16 35 35 H 1.09001 * 110.70546 * 154.03507 * 20 19 16 36 36 H 1.08998 * 109.47009 * 65.90705 * 23 21 15 37 37 H 1.09003 * 109.46914 * 185.90724 * 23 21 15 38 38 H 1.08999 * 109.47388 * 305.90490 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.4746 -1.8364 1.1426 6 7 1.9901 -0.0945 2.4286 7 6 2.4465 -0.7410 3.5481 8 1 2.8404 -1.7436 3.4699 9 6 2.4035 -0.1059 4.7832 10 7 1.9247 1.1142 4.8783 11 14 3.0261 -0.9864 6.3085 12 1 4.4718 -0.6998 6.4900 13 1 2.2739 -0.5098 7.4969 14 1 2.8276 -2.4496 6.1511 15 7 2.0196 -0.6925 -1.1994 16 6 1.3533 -0.1807 -2.4158 17 1 1.0413 0.8536 -2.2710 18 6 0.1504 -1.0563 -2.7727 19 6 2.4318 -0.2685 -3.5243 20 6 3.7170 0.1098 -2.7418 21 6 3.4756 -0.5181 -1.3529 22 1 3.9735 -1.4857 -1.2918 23 6 4.0061 0.4136 -0.2612 24 1 -0.3634 -1.0221 -0.1065 25 1 -0.3633 0.4188 0.9385 26 1 -0.3633 0.6033 -0.8319 27 1 1.6360 0.8058 2.4990 28 1 1.8943 1.5575 5.7407 29 1 -0.6096 -0.9630 -1.9970 30 1 -0.2637 -0.7330 -3.7278 31 1 0.4675 -2.0964 -2.8475 32 1 2.2335 0.4499 -4.3198 33 1 2.5012 -1.2804 -3.9232 34 1 3.8158 1.1924 -2.6633 35 1 4.5978 -0.3256 -3.2137 36 1 3.8916 -0.0645 0.7116 37 1 5.0607 0.6215 -0.4420 38 1 3.4440 1.3473 -0.2756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126512125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:42 Heat of formation + Delta-G solvation = -26.191866 kcal Electronic energy + Delta-G solvation = -18476.513588 eV Core-core repulsion = 15740.156565 eV Total energy + Delta-G solvation = -2736.357023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03458 -37.56227 -33.87956 -33.05453 -32.50665 -31.06113 -28.52196 -27.74675 -25.28689 -23.94360 -22.70477 -20.67615 -19.60061 -18.43995 -17.64628 -16.20257 -15.83628 -15.45928 -14.54087 -14.44830 -13.80121 -13.50453 -13.16662 -13.01338 -12.72293 -12.58214 -11.89660 -11.84488 -11.61301 -11.50879 -11.47506 -11.08659 -11.06004 -10.90687 -10.67061 -10.48013 -10.36390 -10.30571 -10.26728 -10.14863 -9.43000 -8.29812 -7.90025 -7.67296 -6.36400 -3.76992 3.20714 3.28925 3.35085 3.97089 4.08093 4.28770 4.77992 4.81311 5.05649 5.15713 5.27411 5.37760 5.53105 5.56296 5.60440 5.71031 5.78320 5.83694 5.88091 5.91734 5.97873 6.02109 6.08901 6.10534 6.24570 6.28681 6.41458 6.51154 6.60571 6.70945 6.76950 7.47446 7.50604 7.59908 8.12624 8.69190 9.24425 9.61545 10.14638 10.81553 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040085 B = 0.006454 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.344918 B = 4337.329312 C = 4599.365140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 H 0.057 0.943 4 C 0.459 3.541 5 O -0.575 6.575 6 N -0.570 5.570 7 C -0.296 4.296 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.904 5.904 11 Si 0.928 3.072 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.270 1.270 15 N -0.493 5.493 16 C 0.067 3.933 17 H 0.050 0.950 18 C -0.141 4.141 19 C -0.124 4.124 20 C -0.140 4.140 21 C 0.081 3.919 22 H 0.086 0.914 23 C -0.181 4.181 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.390 0.610 28 H 0.270 0.730 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 2.185 -13.283 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 H 0.074 0.926 4 C 0.245 3.755 5 O -0.458 6.458 6 N -0.207 5.207 7 C -0.426 4.426 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.755 3.245 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.195 1.195 15 N -0.218 5.218 16 C -0.041 4.041 17 H 0.068 0.932 18 C -0.199 4.199 19 C -0.162 4.162 20 C -0.179 4.179 21 C -0.027 4.027 22 H 0.104 0.896 23 C -0.238 4.238 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.224 0.776 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.851 1.002 -13.083 13.149 hybrid contribution 0.304 1.144 0.862 1.464 sum -0.547 2.147 -12.221 12.420 Atomic orbital electron populations 1.21990 0.93740 1.02716 1.01725 1.21763 0.95859 0.96153 0.91354 0.92558 1.19533 0.84358 0.87708 0.83912 1.90533 1.50311 1.19347 1.85641 1.41891 1.56078 1.16866 1.05841 1.19679 1.37587 1.00706 0.84629 0.88030 1.25222 0.97640 0.95912 0.99184 1.69616 1.46385 1.12381 1.26167 0.85893 0.78548 0.79575 0.80488 1.20509 1.20996 1.19463 1.63460 1.03360 1.54646 1.00326 1.22549 0.94888 0.96853 0.89856 0.93186 1.21920 0.97144 1.00445 1.00378 1.22721 0.94590 1.01837 0.97027 1.22929 0.98140 1.00505 0.96306 1.22268 0.88573 0.98903 0.92957 0.89598 1.22567 1.00376 0.99477 1.01429 0.91277 0.91750 0.92528 0.77650 0.91999 0.91868 0.93141 0.91931 0.91407 0.90728 0.91712 0.91153 0.89606 0.92746 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.58 37.16 0.28 -2.09 16 2 C 0.06 1.14 1.90 -68.86 -0.13 1.01 16 3 H 0.06 1.02 5.73 -51.93 -0.30 0.72 16 4 C 0.46 10.99 4.06 -10.98 -0.04 10.94 16 5 O -0.58 -15.89 15.35 5.55 0.09 -15.81 16 6 N -0.57 -14.54 5.29 -10.96 -0.06 -14.59 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 N -0.49 -8.64 4.33 -209.04 -0.90 -9.54 16 16 C 0.07 0.92 2.39 -66.19 -0.16 0.76 16 17 H 0.05 0.67 7.04 -51.93 -0.37 0.31 16 18 C -0.14 -1.77 9.13 37.16 0.34 -1.43 16 19 C -0.12 -1.47 6.49 -24.59 -0.16 -1.63 16 20 C -0.14 -1.80 6.47 -24.90 -0.16 -1.96 16 21 C 0.08 1.36 3.44 -66.72 -0.23 1.13 16 22 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 23 C -0.18 -3.19 7.74 37.16 0.29 -2.91 16 24 H 0.07 1.19 7.19 -51.93 -0.37 0.82 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.77 6.08 -51.93 -0.32 0.45 16 27 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.06 0.81 5.21 -51.93 -0.27 0.54 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.88 5.02 -51.93 -0.26 1.62 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.90 6.18 -51.93 -0.32 0.58 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -30.45 291.98 -6.81 -37.26 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.82 Total: 10.21 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.22 Total: -4.14 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.24 Total: -48.18 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.45 -6.81 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126512125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.068 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds