Wall clock time and date at job start Sun Mar 29 2020 22:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47055 * 2 1 4 4 C 1.50707 * 109.46976 * 119.99797 * 2 1 3 5 5 O 1.21292 * 119.99640 * 104.03192 * 4 2 1 6 6 N 1.34778 * 119.99891 * 284.03474 * 4 2 1 7 7 C 1.37095 * 119.99707 * 179.97438 * 6 4 2 8 8 H 1.08000 * 120.00234 * 0.02562 * 7 6 4 9 9 C 1.38948 * 119.99977 * 179.97438 * 7 6 4 10 10 N 1.31415 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00333 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46874 * 90.00132 * 11 9 7 13 13 H 1.48498 * 109.47089 * 210.00296 * 11 9 7 14 14 H 1.48497 * 109.46844 * 330.00593 * 11 9 7 15 15 N 1.46899 * 109.47015 * 239.99764 * 2 1 3 16 16 C 1.47841 * 110.99872 * 49.62645 * 15 2 1 17 17 H 1.09002 * 110.37681 * 27.53718 * 16 15 2 18 18 C 1.53002 * 110.37451 * 265.18955 * 16 15 2 19 19 C 1.54912 * 104.79399 * 146.36536 * 16 15 2 20 20 C 1.55147 * 101.65208 * 322.92785 * 19 16 15 21 21 C 1.47442 * 110.99933 * 170.47294 * 15 2 1 22 22 H 1.08996 * 109.89003 * 117.33649 * 21 15 2 23 23 C 1.53005 * 109.88637 * 356.14633 * 21 15 2 24 24 H 1.08999 * 109.47462 * 174.05003 * 1 2 3 25 25 H 1.09000 * 109.47184 * 294.04787 * 1 2 3 26 26 H 1.09000 * 109.46865 * 54.05026 * 1 2 3 27 27 H 0.97003 * 120.00178 * 0.02562 * 6 4 2 28 28 H 0.97005 * 120.00261 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.46594 * 66.12777 * 18 16 15 30 30 H 1.09008 * 109.46863 * 186.12645 * 18 16 15 31 31 H 1.09001 * 109.47007 * 306.12929 * 18 16 15 32 32 H 1.09003 * 110.98941 * 204.84338 * 19 16 15 33 33 H 1.08991 * 111.02658 * 81.03547 * 19 16 15 34 34 H 1.08997 * 110.70548 * 277.27755 * 20 19 16 35 35 H 1.09001 * 110.70546 * 154.03507 * 20 19 16 36 36 H 1.08998 * 109.47009 * 65.90705 * 23 21 15 37 37 H 1.09003 * 109.46914 * 185.90724 * 23 21 15 38 38 H 1.08999 * 109.47388 * 305.90490 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.4746 -1.8364 1.1426 6 7 1.9901 -0.0945 2.4286 7 6 2.4465 -0.7410 3.5481 8 1 2.8404 -1.7436 3.4699 9 6 2.4035 -0.1059 4.7832 10 7 1.9247 1.1142 4.8783 11 14 3.0261 -0.9864 6.3085 12 1 4.4718 -0.6998 6.4900 13 1 2.2739 -0.5098 7.4969 14 1 2.8276 -2.4496 6.1511 15 7 2.0196 -0.6925 -1.1994 16 6 1.3533 -0.1807 -2.4158 17 1 1.0413 0.8536 -2.2710 18 6 0.1504 -1.0563 -2.7727 19 6 2.4318 -0.2685 -3.5243 20 6 3.7170 0.1098 -2.7418 21 6 3.4756 -0.5181 -1.3529 22 1 3.9735 -1.4857 -1.2918 23 6 4.0061 0.4136 -0.2612 24 1 -0.3634 -1.0221 -0.1065 25 1 -0.3633 0.4188 0.9385 26 1 -0.3633 0.6033 -0.8319 27 1 1.6360 0.8058 2.4990 28 1 1.8943 1.5575 5.7407 29 1 -0.6096 -0.9630 -1.9970 30 1 -0.2637 -0.7330 -3.7278 31 1 0.4675 -2.0964 -2.8475 32 1 2.2335 0.4499 -4.3198 33 1 2.5012 -1.2804 -3.9232 34 1 3.8158 1.1924 -2.6633 35 1 4.5978 -0.3256 -3.2137 36 1 3.8916 -0.0645 0.7116 37 1 5.0607 0.6215 -0.4420 38 1 3.4440 1.3473 -0.2756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126512125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:42 Heat of formation + Delta-G solvation = -47.799094 kcal Electronic energy + Delta-G solvation = -18477.450547 eV Core-core repulsion = 15740.156565 eV Total energy + Delta-G solvation = -2737.293982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47913 -39.28509 -35.91979 -34.46086 -33.74898 -33.07049 -29.76403 -28.99735 -27.21903 -25.27105 -24.14019 -21.86078 -21.10833 -20.20846 -19.46368 -17.84086 -17.11100 -16.93365 -16.47125 -16.04235 -15.64005 -14.89705 -14.46445 -14.41176 -14.15016 -13.75252 -13.52357 -13.28312 -13.10245 -13.00330 -12.86209 -12.69883 -12.42925 -12.26592 -12.20754 -12.10848 -11.96624 -11.58837 -11.52849 -11.45283 -11.36715 -10.19772 -9.98163 -9.05285 -8.44780 -5.93215 1.37164 1.40124 1.53001 2.10171 2.28801 2.81512 3.21258 3.34052 3.68920 3.83564 3.99076 4.08195 4.20466 4.30489 4.37088 4.44062 4.47052 4.56818 4.67650 4.74295 4.80239 4.88618 4.94635 4.98858 5.05097 5.13135 5.17917 5.24808 5.36590 5.41795 5.44797 5.54025 5.96298 6.16932 6.30853 6.64368 7.15943 7.59784 8.17126 8.72817 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040085 B = 0.006454 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.344918 B = 4337.329312 C = 4599.365140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.072 3.928 3 H 0.068 0.932 4 C 0.462 3.538 5 O -0.619 6.619 6 N -0.577 5.577 7 C -0.330 4.330 8 H 0.075 0.925 9 C -0.013 4.013 10 N -0.922 5.922 11 Si 0.990 3.010 12 H -0.271 1.271 13 H -0.270 1.270 14 H -0.275 1.275 15 N -0.516 5.516 16 C 0.061 3.939 17 H 0.063 0.937 18 C -0.139 4.139 19 C -0.115 4.115 20 C -0.129 4.129 21 C 0.075 3.925 22 H 0.055 0.945 23 C -0.174 4.174 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.393 0.607 28 H 0.277 0.723 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 3.507 -14.822 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.040 4.040 3 H 0.086 0.914 4 C 0.250 3.750 5 O -0.505 6.505 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.093 0.907 9 C -0.212 4.212 10 N -0.563 5.563 11 Si 0.814 3.186 12 H -0.197 1.197 13 H -0.194 1.194 14 H -0.200 1.200 15 N -0.242 5.242 16 C -0.046 4.046 17 H 0.081 0.919 18 C -0.196 4.196 19 C -0.153 4.153 20 C -0.168 4.168 21 C -0.033 4.033 22 H 0.073 0.927 23 C -0.231 4.231 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.226 0.774 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.283 2.349 -14.639 14.881 hybrid contribution 0.450 0.707 1.302 1.549 sum -0.833 3.056 -13.337 13.708 Atomic orbital electron populations 1.21972 0.91796 1.02744 1.02960 1.21603 0.97179 0.95742 0.89505 0.91435 1.20484 0.82458 0.87193 0.84885 1.90492 1.51943 1.21581 1.86478 1.41915 1.56541 1.16896 1.06067 1.19606 1.39567 1.00351 0.86387 0.90675 1.25980 0.97253 0.96592 1.01372 1.69676 1.46338 1.13088 1.27193 0.84971 0.78388 0.78100 0.77135 1.19697 1.19449 1.19953 1.63373 1.04031 1.55570 1.01225 1.22745 0.95640 0.97531 0.88674 0.91882 1.21910 0.96530 0.99422 1.01761 1.22730 0.92906 1.02787 0.96900 1.22855 0.99422 1.00995 0.93511 1.22242 0.88208 0.97582 0.95261 0.92681 1.22463 1.01873 0.99573 0.99239 0.92407 0.92408 0.88798 0.77376 0.91393 0.92470 0.90106 0.93509 0.88250 0.90829 0.90355 0.89737 0.94415 0.91059 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 7.58 71.98 0.55 -3.82 16 2 C 0.07 2.68 1.90 44.17 0.08 2.77 16 3 H 0.07 2.37 5.73 -2.39 -0.01 2.36 16 4 C 0.46 22.94 4.06 87.66 0.36 23.29 16 5 O -0.62 -36.03 15.35 -3.07 -0.05 -36.07 16 6 N -0.58 -30.55 5.29 -306.98 -1.62 -32.18 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 10 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 11 Si 0.99 43.96 29.55 68.60 2.03 45.99 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 N -0.52 -17.74 4.33 -815.26 -3.53 -21.26 16 16 C 0.06 1.52 2.39 45.39 0.11 1.62 16 17 H 0.06 1.42 7.04 -2.39 -0.02 1.41 16 18 C -0.14 -3.12 9.13 71.98 0.66 -2.46 16 19 C -0.12 -2.32 6.49 31.98 0.21 -2.11 16 20 C -0.13 -2.95 6.47 31.78 0.21 -2.75 16 21 C 0.08 2.50 3.44 45.26 0.16 2.65 16 22 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 23 C -0.17 -6.16 7.74 71.98 0.56 -5.61 16 24 H 0.06 1.97 7.19 -2.39 -0.02 1.95 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.09 2.28 6.08 -2.39 -0.01 2.27 16 27 H 0.39 19.99 7.90 -92.71 -0.73 19.26 16 28 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.06 1.34 5.21 -2.39 -0.01 1.33 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 34 H 0.08 1.61 7.85 -2.39 -0.02 1.59 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.71 5.02 -2.39 -0.01 1.70 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.10 6.18 -2.39 -0.01 2.08 16 Total: -1.00 -68.36 291.98 1.59 -66.76 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.32 Total: 32.13 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.16 Total: -5.02 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.87 Total: -103.79 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.05 Total: -36.07 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.36 1.59 -66.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126512125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.964 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds