Wall clock time and date at job start Sun Mar 29 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.53707 * 2 1 4 4 C 1.53126 * 109.50168 * 239.90404 * 2 1 3 5 5 C 1.53114 * 109.16071 * 182.40725 * 4 2 1 6 6 C 1.53035 * 109.28189 * 57.65474 * 5 4 2 7 7 N 1.46848 * 109.52142 * 300.82150 * 6 5 4 8 8 C 1.46906 * 111.00135 * 185.83611 * 7 6 5 9 9 C 1.52995 * 109.46905 * 293.95786 * 8 7 6 10 10 N 1.46507 * 109.47010 * 179.97438 * 9 8 7 11 11 C 1.34773 * 120.00043 * 179.97438 * 10 9 8 12 12 O 1.21688 * 119.99847 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99981 * 180.02562 * 11 10 9 14 14 H 1.08000 * 120.00004 * 0.02562 * 13 11 10 15 15 C 1.40044 * 119.99840 * 180.02562 * 13 11 10 16 16 N 1.30669 * 120.00286 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99832 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47540 * 89.99578 * 17 15 13 19 19 H 1.48503 * 109.47330 * 209.99807 * 17 15 13 20 20 H 1.48498 * 109.47057 * 329.99387 * 17 15 13 21 21 C 1.46847 * 111.19788 * 61.74047 * 7 6 5 22 22 H 1.09001 * 109.47175 * 180.09372 * 1 2 3 23 23 H 1.09001 * 109.47183 * 300.09420 * 1 2 3 24 24 H 1.09001 * 109.47275 * 60.09378 * 1 2 3 25 25 H 1.09001 * 109.52438 * 302.31069 * 4 2 1 26 26 H 1.09000 * 109.51793 * 62.43840 * 4 2 1 27 27 H 1.08994 * 109.50522 * 177.59764 * 5 4 2 28 28 H 1.09009 * 109.50039 * 297.71544 * 5 4 2 29 29 H 1.09000 * 109.45907 * 60.83499 * 6 5 4 30 30 H 1.08999 * 109.46252 * 180.82076 * 6 5 4 31 31 H 1.09000 * 109.46657 * 53.95704 * 8 7 6 32 32 H 1.08997 * 109.47009 * 173.95451 * 8 7 6 33 33 H 1.09000 * 109.47397 * 299.99465 * 9 8 7 34 34 H 1.08997 * 109.47561 * 60.00003 * 9 8 7 35 35 H 0.97003 * 119.99914 * 0.02562 * 10 9 8 36 36 H 0.97008 * 120.00049 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.46634 * 178.23927 * 21 7 6 38 38 H 1.09006 * 109.46422 * 58.27823 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5711 -0.7720 -1.2108 6 6 4.0229 -1.4731 0.0722 7 7 3.5093 -0.7423 1.2377 8 6 4.0372 -1.3061 2.4873 9 6 3.4928 -2.7233 2.6773 10 7 4.0198 -3.2859 3.9232 11 6 3.6729 -4.5327 4.2994 12 8 2.9223 -5.1913 3.6040 13 6 4.1990 -5.0945 5.5445 14 1 4.8648 -4.5098 6.1618 15 6 3.8389 -6.3903 5.9350 16 7 3.0330 -7.0976 5.1883 17 14 4.5097 -7.1070 7.5243 18 1 3.5880 -6.7814 8.6422 19 1 4.6259 -8.5816 7.3921 20 1 5.8487 -6.5280 7.8021 21 6 2.0409 -0.7236 1.2479 22 1 -0.3633 -1.0277 0.0017 23 1 -0.3633 0.5153 0.8891 24 1 -0.3634 0.5124 -0.8908 25 1 1.6452 -1.7391 -1.2691 26 1 1.7147 -0.1875 -2.1398 27 1 3.9394 -1.3234 -2.0759 28 1 3.9677 0.2432 -1.2298 29 1 3.6374 -2.4926 0.0840 30 1 5.1120 -1.4961 0.1093 31 1 5.1257 -1.3383 2.4400 32 1 3.7283 -0.6827 3.3263 33 1 2.4043 -2.6911 2.7247 34 1 3.8018 -3.3468 1.8384 35 1 4.6179 -2.7607 4.4777 36 1 2.7833 -7.9950 5.4591 37 1 1.6905 -0.2025 2.1388 38 1 1.6647 -1.7466 1.2543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130423607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:53 Heat of formation + Delta-G solvation = -82.356773 kcal Electronic energy + Delta-G solvation = -17456.518600 eV Core-core repulsion = 14717.726084 eV Total energy + Delta-G solvation = -2738.792516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53958 -39.25937 -36.32631 -34.76748 -34.13681 -32.84917 -29.78684 -27.96631 -27.48129 -25.43256 -23.26781 -22.21141 -21.88461 -20.36739 -19.21924 -17.53586 -16.77631 -16.49796 -16.40818 -15.91953 -15.79302 -15.26571 -14.90779 -14.81221 -14.18626 -14.01436 -13.81628 -13.41971 -13.07877 -13.02653 -12.86694 -12.81898 -12.68619 -12.65521 -12.08945 -12.02912 -11.79864 -11.56470 -11.27660 -11.16066 -10.95820 -9.97430 -9.55509 -9.36428 -8.32234 -6.89819 1.39266 1.41054 1.56820 2.23013 2.43343 2.76443 3.24434 3.56438 3.77611 3.87554 3.89382 4.03135 4.12398 4.24119 4.39169 4.43007 4.50137 4.64738 4.69712 4.79769 4.82003 4.84920 4.94777 4.98907 5.03876 5.12961 5.21016 5.26959 5.28938 5.34432 5.52533 5.82662 5.96524 6.06222 6.19926 6.22986 6.83125 7.50674 8.44597 8.63721 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045330 B = 0.004481 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.546710 B = 6247.050148 C = 6398.388642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.087 0.913 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.043 3.957 7 N -0.522 5.522 8 C 0.059 3.941 9 C 0.107 3.893 10 N -0.752 5.752 11 C 0.533 3.467 12 O -0.637 6.637 13 C -0.573 4.573 14 H 0.091 0.909 15 C 0.026 3.974 16 N -0.824 5.824 17 Si 1.002 2.998 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.247 1.247 21 C 0.051 3.949 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.012 0.988 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.398 0.602 36 H 0.275 0.725 37 H 0.076 0.924 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 15.038 -8.139 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.147 4.147 6 C -0.084 4.084 7 N -0.245 5.245 8 C -0.070 4.070 9 C -0.019 4.019 10 N -0.407 5.407 11 C 0.337 3.663 12 O -0.525 6.525 13 C -0.609 4.609 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.454 5.454 17 Si 0.821 3.179 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.170 1.170 21 C -0.077 4.077 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.669 14.931 -8.756 17.322 hybrid contribution -0.091 -1.490 0.851 1.719 sum 0.577 13.441 -7.904 15.603 Atomic orbital electron populations 1.21792 0.94290 1.01484 1.02714 1.21147 0.95704 1.00093 0.93223 0.89505 1.21684 0.95664 0.99994 0.98240 1.21558 0.95801 1.01710 0.95624 1.22252 1.00338 0.94597 0.91262 1.62376 1.08336 1.52019 1.01742 1.22349 1.00829 0.90524 0.93271 1.21597 0.97080 0.95986 0.87262 1.45716 1.53533 1.16834 1.24646 1.18728 0.80573 0.80079 0.86876 1.90546 1.42030 1.61774 1.58111 1.21457 1.31628 1.01287 1.06556 0.89082 1.27048 0.93163 0.96736 1.01887 1.70204 1.27565 1.09828 1.37795 0.84961 0.79778 0.77289 0.75889 1.18513 1.19806 1.16981 1.22273 0.87295 0.98313 0.99824 0.93955 0.92197 0.90793 0.93770 0.89818 0.90431 0.90111 0.96957 0.90013 0.88918 0.88992 0.95657 0.95910 0.76765 0.91535 0.90596 0.96937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.20 71.98 0.66 -2.04 16 2 C -0.08 -1.72 2.88 -10.74 -0.03 -1.75 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -2.36 5.29 30.67 0.16 -2.20 16 5 C -0.11 -2.17 6.09 30.64 0.19 -1.99 16 6 C 0.04 1.12 5.05 86.32 0.44 1.56 16 7 N -0.52 -13.95 4.86 -896.36 -4.35 -18.31 16 8 C 0.06 1.72 5.47 86.30 0.47 2.19 16 9 C 0.11 4.40 4.97 86.38 0.43 4.83 16 10 N -0.75 -34.96 5.55 -467.41 -2.59 -37.56 16 11 C 0.53 32.07 7.75 86.36 0.67 32.73 16 12 O -0.64 -44.53 15.02 -4.31 -0.06 -44.60 16 13 C -0.57 -33.05 9.54 24.83 0.24 -32.82 16 14 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 15 C 0.03 1.50 5.50 85.30 0.47 1.97 16 16 N -0.82 -51.59 11.83 21.83 0.26 -51.34 16 17 Si 1.00 41.24 29.56 68.60 2.03 43.27 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 21 C 0.05 1.36 4.12 86.32 0.36 1.72 16 22 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.01 0.38 6.75 -2.39 -0.02 0.37 16 30 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 31 H 0.09 2.45 8.06 -2.39 -0.02 2.43 16 32 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.03 1.15 6.51 -2.39 -0.02 1.13 16 34 H 0.02 1.03 6.68 -2.39 -0.02 1.02 16 35 H 0.40 15.52 8.45 -92.71 -0.78 14.73 16 36 H 0.27 15.52 8.29 -92.70 -0.77 14.75 16 37 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 38 H 0.01 0.41 6.61 -2.38 -0.02 0.39 16 Total: -1.00 -76.70 302.67 -0.43 -77.13 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.25 Total: 27.19 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 4.05 Total: 4.21 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.69 Total: -107.20 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.06 Total: -44.60 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -76.70 -0.43 -77.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130423607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.222 kcal (2) G-P(sol) polarization free energy of solvation -76.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds