Wall clock time and date at job start Sun Mar 29 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.53338 * 2 1 4 4 C 1.53115 * 109.50396 * 120.09905 * 2 1 3 5 5 C 1.53118 * 109.16173 * 177.59768 * 4 2 1 6 6 C 1.53037 * 109.27803 * 302.34591 * 5 4 2 7 7 N 1.46845 * 109.52529 * 59.17688 * 6 5 4 8 8 C 1.46899 * 111.00340 * 174.16038 * 7 6 5 9 9 C 1.52995 * 109.47020 * 294.21312 * 8 7 6 10 10 N 1.46498 * 109.47012 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00120 * 180.02562 * 10 9 8 12 12 O 1.21692 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.46367 * 120.00014 * 179.97438 * 11 10 9 14 14 H 1.07994 * 120.00466 * 353.94184 * 13 11 10 15 15 C 1.40057 * 119.99740 * 173.93608 * 13 11 10 16 16 N 1.30664 * 120.00032 * 6.15761 * 15 13 11 17 17 Si 1.86802 * 119.99875 * 186.15173 * 15 13 11 18 18 H 1.48498 * 109.47165 * 94.98725 * 17 15 13 19 19 H 1.48502 * 109.47336 * 214.98959 * 17 15 13 20 20 H 1.48502 * 109.47196 * 334.98648 * 17 15 13 21 21 C 1.46847 * 111.19999 * 298.26072 * 7 6 5 22 22 H 1.09001 * 109.46602 * 180.09970 * 1 2 3 23 23 H 1.08992 * 109.47193 * 300.09839 * 1 2 3 24 24 H 1.09000 * 109.47008 * 60.10248 * 1 2 3 25 25 H 1.08996 * 109.52416 * 57.68973 * 4 2 1 26 26 H 1.09009 * 109.57522 * 297.53429 * 4 2 1 27 27 H 1.08999 * 109.50160 * 182.40339 * 5 4 2 28 28 H 1.09004 * 109.50100 * 62.28581 * 5 4 2 29 29 H 1.08997 * 109.45933 * 299.16043 * 6 5 4 30 30 H 1.08999 * 109.46073 * 179.19521 * 6 5 4 31 31 H 1.09006 * 109.46749 * 54.21122 * 8 7 6 32 32 H 1.08995 * 109.47554 * 174.21002 * 8 7 6 33 33 H 1.08997 * 109.47277 * 299.99817 * 9 8 7 34 34 H 1.09007 * 109.47452 * 59.99811 * 9 8 7 35 35 H 0.97001 * 120.00239 * 359.97438 * 10 9 8 36 36 H 0.97005 * 120.00180 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.46733 * 181.75665 * 21 7 6 38 38 H 1.09003 * 109.46275 * 301.72737 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2107 6 6 4.0230 -1.4729 -0.0724 7 7 3.5093 -0.7421 -1.2379 8 6 4.0373 -1.3057 -2.4875 9 6 5.5497 -1.0826 -2.5486 10 7 6.0763 -1.6453 -3.7945 11 6 7.3941 -1.5655 -4.0659 12 8 8.1465 -1.0266 -3.2758 13 6 7.9203 -2.1282 -5.3104 14 1 7.2722 -2.6923 -5.9646 15 6 9.2646 -1.9350 -5.6529 16 7 10.0775 -1.3579 -4.8083 17 14 9.8952 -2.5025 -7.3172 18 1 9.8559 -1.3679 -8.2745 19 1 11.2928 -2.9851 -7.1787 20 1 9.0383 -3.6055 -7.8214 21 6 2.0410 -0.7234 -1.2481 22 1 -0.3632 -1.0277 0.0018 23 1 -0.3633 0.5153 0.8890 24 1 -0.3633 0.5122 -0.8909 25 1 1.6453 -1.7391 1.2689 26 1 1.7156 -0.1880 2.1404 27 1 3.9395 -1.3234 2.0758 28 1 3.9678 0.2433 1.2298 29 1 3.6376 -2.4924 -0.0843 30 1 5.1121 -1.4961 -0.1094 31 1 3.8260 -2.3746 -2.5217 32 1 3.5629 -0.8142 -3.3368 33 1 5.7610 -0.0139 -2.5143 34 1 6.0242 -1.5742 -1.6992 35 1 5.4768 -2.0759 -4.4238 36 1 11.0087 -1.2244 -5.0453 37 1 1.6905 -0.2022 -2.1390 38 1 1.6648 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130423828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:55 Heat of formation + Delta-G solvation = -56.295262 kcal Electronic energy + Delta-G solvation = -17187.604039 eV Core-core repulsion = 14449.941635 eV Total energy + Delta-G solvation = -2737.662404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.27544 -37.22489 -34.93149 -32.90673 -32.21470 -31.82806 -28.42448 -26.62515 -25.98996 -23.66191 -22.47120 -20.73138 -19.76732 -19.57469 -17.13268 -15.88580 -15.36588 -15.22482 -14.95861 -14.35944 -14.26098 -13.88055 -13.79305 -13.61596 -12.79801 -12.62337 -12.34580 -12.10053 -12.07626 -11.77822 -11.18998 -11.10367 -11.07526 -11.03048 -10.83175 -10.55153 -10.45126 -10.30771 -10.20085 -10.13864 -8.81716 -8.23499 -7.57671 -7.44408 -6.16226 -4.60273 3.16036 3.22864 3.26475 3.83066 4.15778 4.60618 4.62747 4.74378 4.78577 5.02680 5.11743 5.28861 5.39670 5.40819 5.42301 5.47433 5.52988 5.62064 5.69879 5.72085 5.81596 5.86714 5.88583 5.96698 6.00947 6.08884 6.19042 6.34267 6.58151 6.66773 7.17555 7.20374 7.46727 7.97014 8.14739 8.36814 9.05697 9.57903 10.63665 10.82483 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060798 B = 0.003989 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.430577 B = 7016.859457 C = 7321.295315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.050 3.950 7 N -0.535 5.535 8 C 0.049 3.951 9 C 0.137 3.863 10 N -0.769 5.769 11 C 0.555 3.445 12 O -0.581 6.581 13 C -0.547 4.547 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.908 3.092 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.265 1.265 21 C 0.062 3.938 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.378 0.622 36 H 0.268 0.732 37 H 0.073 0.927 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.957 0.071 7.865 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.078 4.078 7 N -0.260 5.260 8 C -0.079 4.079 9 C 0.012 3.988 10 N -0.425 5.425 11 C 0.359 3.641 12 O -0.463 6.463 13 C -0.584 4.584 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.066 4.066 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.209 0.791 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.033 1.021 8.547 18.198 hybrid contribution -0.299 -1.346 -1.208 1.833 sum -16.332 -0.325 7.339 17.908 Atomic orbital electron populations 1.21795 0.95188 1.01629 1.01730 1.21176 0.94822 1.00517 0.94418 0.90260 1.21645 0.95923 1.00197 0.97510 1.21590 0.95421 1.01804 0.96697 1.22191 1.01006 0.94541 0.90046 1.61779 1.07388 1.54517 1.02299 1.22275 0.96649 0.97311 0.91675 1.20802 0.90078 0.98948 0.88990 1.46098 1.10053 1.65135 1.21197 1.18210 0.78917 0.79659 0.87317 1.90599 1.56689 1.48569 1.50480 1.20886 0.95413 1.36572 1.05551 0.91429 1.25709 0.96542 0.93390 0.97581 1.70030 1.04386 1.31694 1.33571 0.86363 0.78384 0.79426 0.82576 1.19809 1.20482 1.18929 1.22121 0.87497 0.98647 0.98335 0.92917 0.92577 0.92590 0.92480 0.92020 0.91635 0.90957 0.95176 0.89808 0.94810 0.90609 0.92579 0.93500 0.79054 0.92145 0.90873 0.95207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.09 -0.89 2.88 -90.54 -0.26 -1.15 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.12 -1.10 5.29 -26.61 -0.14 -1.24 16 5 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 6 C 0.05 0.66 5.29 -3.84 -0.02 0.64 16 7 N -0.54 -7.44 4.66 -234.67 -1.09 -8.53 16 8 C 0.05 0.75 5.07 -3.83 -0.02 0.73 16 9 C 0.14 2.76 5.60 -4.05 -0.02 2.74 16 10 N -0.77 -17.72 5.55 -61.72 -0.34 -18.06 16 11 C 0.56 16.25 7.74 -12.99 -0.10 16.15 16 12 O -0.58 -19.36 15.05 5.20 0.08 -19.28 16 13 C -0.55 -15.75 9.54 -35.63 -0.34 -16.09 16 14 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 15 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 16 N -0.77 -23.44 11.85 55.55 0.66 -22.78 16 17 Si 0.91 20.38 29.56 -169.99 -5.03 15.35 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 21 C 0.06 0.71 4.74 -3.83 -0.02 0.69 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.25 6.21 -51.93 -0.32 0.92 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.08 1.09 7.99 -51.93 -0.41 0.68 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.00 6.43 -51.93 -0.33 0.67 16 35 H 0.38 7.58 8.45 -40.82 -0.35 7.23 16 36 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 37 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -34.06 305.86 -8.40 -42.47 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.45 Total: 3.65 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.84 Total: 2.58 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.78 Total: -49.38 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.08 Total: -19.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.06 -8.40 -42.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130423828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.830 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds