Wall clock time and date at job start Sun Mar 29 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.53338 * 2 1 4 4 C 1.53115 * 109.50396 * 120.09905 * 2 1 3 5 5 C 1.53118 * 109.16173 * 177.59768 * 4 2 1 6 6 C 1.53037 * 109.27803 * 302.34591 * 5 4 2 7 7 N 1.46845 * 109.52529 * 59.17688 * 6 5 4 8 8 C 1.46899 * 111.00340 * 174.16038 * 7 6 5 9 9 C 1.52995 * 109.47020 * 294.21312 * 8 7 6 10 10 N 1.46498 * 109.47012 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00120 * 180.02562 * 10 9 8 12 12 O 1.21692 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.46367 * 120.00014 * 179.97438 * 11 10 9 14 14 H 1.07994 * 120.00466 * 353.94184 * 13 11 10 15 15 C 1.40057 * 119.99740 * 173.93608 * 13 11 10 16 16 N 1.30664 * 120.00032 * 6.15761 * 15 13 11 17 17 Si 1.86802 * 119.99875 * 186.15173 * 15 13 11 18 18 H 1.48498 * 109.47165 * 94.98725 * 17 15 13 19 19 H 1.48502 * 109.47336 * 214.98959 * 17 15 13 20 20 H 1.48502 * 109.47196 * 334.98648 * 17 15 13 21 21 C 1.46847 * 111.19999 * 298.26072 * 7 6 5 22 22 H 1.09001 * 109.46602 * 180.09970 * 1 2 3 23 23 H 1.08992 * 109.47193 * 300.09839 * 1 2 3 24 24 H 1.09000 * 109.47008 * 60.10248 * 1 2 3 25 25 H 1.08996 * 109.52416 * 57.68973 * 4 2 1 26 26 H 1.09009 * 109.57522 * 297.53429 * 4 2 1 27 27 H 1.08999 * 109.50160 * 182.40339 * 5 4 2 28 28 H 1.09004 * 109.50100 * 62.28581 * 5 4 2 29 29 H 1.08997 * 109.45933 * 299.16043 * 6 5 4 30 30 H 1.08999 * 109.46073 * 179.19521 * 6 5 4 31 31 H 1.09006 * 109.46749 * 54.21122 * 8 7 6 32 32 H 1.08995 * 109.47554 * 174.21002 * 8 7 6 33 33 H 1.08997 * 109.47277 * 299.99817 * 9 8 7 34 34 H 1.09007 * 109.47452 * 59.99811 * 9 8 7 35 35 H 0.97001 * 120.00239 * 359.97438 * 10 9 8 36 36 H 0.97005 * 120.00180 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.46733 * 181.75665 * 21 7 6 38 38 H 1.09003 * 109.46275 * 301.72737 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2107 6 6 4.0230 -1.4729 -0.0724 7 7 3.5093 -0.7421 -1.2379 8 6 4.0373 -1.3057 -2.4875 9 6 5.5497 -1.0826 -2.5486 10 7 6.0763 -1.6453 -3.7945 11 6 7.3941 -1.5655 -4.0659 12 8 8.1465 -1.0266 -3.2758 13 6 7.9203 -2.1282 -5.3104 14 1 7.2722 -2.6923 -5.9646 15 6 9.2646 -1.9350 -5.6529 16 7 10.0775 -1.3579 -4.8083 17 14 9.8952 -2.5025 -7.3172 18 1 9.8559 -1.3679 -8.2745 19 1 11.2928 -2.9851 -7.1787 20 1 9.0383 -3.6055 -7.8214 21 6 2.0410 -0.7234 -1.2481 22 1 -0.3632 -1.0277 0.0018 23 1 -0.3633 0.5153 0.8890 24 1 -0.3633 0.5122 -0.8909 25 1 1.6453 -1.7391 1.2689 26 1 1.7156 -0.1880 2.1404 27 1 3.9395 -1.3234 2.0758 28 1 3.9678 0.2433 1.2298 29 1 3.6376 -2.4924 -0.0843 30 1 5.1121 -1.4961 -0.1094 31 1 3.8260 -2.3746 -2.5217 32 1 3.5629 -0.8142 -3.3368 33 1 5.7610 -0.0139 -2.5143 34 1 6.0242 -1.5742 -1.6992 35 1 5.4768 -2.0759 -4.4238 36 1 11.0087 -1.2244 -5.0453 37 1 1.6905 -0.2022 -2.1390 38 1 1.6648 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130423828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:55 Heat of formation + Delta-G solvation = -81.617401 kcal Electronic energy + Delta-G solvation = -17188.702090 eV Core-core repulsion = 14449.941635 eV Total energy + Delta-G solvation = -2738.760454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33230 -39.28294 -36.29907 -34.75234 -34.13867 -32.83027 -30.07331 -28.00673 -27.37964 -24.95530 -23.48332 -22.03637 -21.66271 -20.57257 -19.18565 -17.51803 -16.99164 -16.51121 -16.27073 -15.85921 -15.48436 -15.23089 -15.00844 -14.96616 -14.30124 -14.02218 -13.72526 -13.36619 -13.07726 -12.99374 -12.81699 -12.71521 -12.61986 -12.43120 -12.17765 -11.99363 -11.93269 -11.50887 -11.20617 -11.14410 -10.93502 -9.90128 -9.50909 -9.32281 -8.30808 -6.86463 1.40722 1.42347 1.58469 2.24194 2.46222 2.65786 3.39980 3.59562 3.80557 3.83179 3.94123 4.04367 4.16641 4.25528 4.41111 4.45524 4.54176 4.62811 4.72468 4.79878 4.83878 4.92907 4.98308 5.00128 5.01259 5.12973 5.23166 5.31799 5.32054 5.38448 5.54130 5.86134 6.02222 6.15950 6.23022 6.26362 6.85707 7.53546 8.47662 8.66301 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060798 B = 0.003989 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.430577 B = 7016.859457 C = 7321.295315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.049 3.951 7 N -0.549 5.549 8 C 0.066 3.934 9 C 0.143 3.857 10 N -0.755 5.755 11 C 0.536 3.464 12 O -0.634 6.634 13 C -0.574 4.574 14 H 0.090 0.910 15 C 0.026 3.974 16 N -0.823 5.823 17 Si 1.002 2.998 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.247 1.247 21 C 0.061 3.939 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.078 0.922 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.851 -0.847 6.762 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.079 4.079 7 N -0.274 5.274 8 C -0.063 4.063 9 C 0.018 3.982 10 N -0.410 5.410 11 C 0.340 3.660 12 O -0.522 6.522 13 C -0.611 4.611 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.452 5.452 17 Si 0.821 3.179 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.170 1.170 21 C -0.066 4.066 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.009 0.089 7.448 19.488 hybrid contribution 0.261 -1.039 -0.795 1.334 sum -17.748 -0.950 6.653 18.978 Atomic orbital electron populations 1.21745 0.93344 1.02215 1.02465 1.21173 0.96261 0.99622 0.93733 0.91346 1.21632 0.94362 1.00803 0.98044 1.21580 0.96871 1.00973 0.95833 1.22187 0.99456 0.95235 0.91038 1.61757 1.09297 1.54640 1.01675 1.22033 0.92779 0.98260 0.93186 1.20795 0.93561 0.96805 0.87012 1.45745 1.08677 1.64263 1.22323 1.18676 0.80468 0.79440 0.87421 1.90552 1.58650 1.50921 1.52073 1.21439 0.96670 1.37125 1.05818 0.89186 1.27044 0.96430 0.92772 1.02624 1.70201 1.05195 1.33115 1.36708 0.84947 0.77833 0.79422 0.75677 1.18744 1.19749 1.16989 1.22226 0.85437 0.99389 0.99562 0.92366 0.91566 0.92218 0.91810 0.90483 0.90425 0.92083 0.94592 0.92514 0.93700 0.89241 0.95168 0.95248 0.77011 0.91517 0.90323 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.17 16 2 C -0.09 -1.58 2.88 -10.74 -0.03 -1.61 16 3 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 4 C -0.11 -1.88 5.29 30.67 0.16 -1.72 16 5 C -0.11 -2.43 6.09 30.65 0.19 -2.25 16 6 C 0.05 1.28 5.29 86.33 0.46 1.74 16 7 N -0.55 -14.95 4.66 -896.37 -4.17 -19.12 16 8 C 0.07 1.96 5.07 86.30 0.44 2.40 16 9 C 0.14 5.96 5.60 86.38 0.48 6.44 16 10 N -0.75 -35.32 5.55 -467.41 -2.59 -37.92 16 11 C 0.54 32.24 7.74 86.36 0.67 32.91 16 12 O -0.63 -44.29 15.05 -4.32 -0.07 -44.35 16 13 C -0.57 -33.18 9.54 24.83 0.24 -32.95 16 14 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 15 C 0.03 1.49 5.49 85.31 0.47 1.96 16 16 N -0.82 -51.44 11.85 21.84 0.26 -51.18 16 17 Si 1.00 41.34 29.56 68.60 2.03 43.37 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 21 C 0.06 1.28 4.74 86.33 0.41 1.69 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.78 6.21 -2.39 -0.01 1.77 16 31 H 0.04 1.26 8.12 -2.38 -0.02 1.24 16 32 H 0.09 2.44 7.99 -2.39 -0.02 2.42 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.03 1.32 6.43 -2.38 -0.02 1.31 16 35 H 0.40 15.61 8.45 -92.71 -0.78 14.83 16 36 H 0.27 15.49 8.29 -92.70 -0.77 14.73 16 37 H 0.08 1.56 8.02 -2.39 -0.02 1.54 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -76.22 305.86 -0.16 -76.38 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.24 Total: 25.37 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.14 Total: 7.45 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -6.51 Total: -108.22 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.07 Total: -44.35 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -76.22 -0.16 -76.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130423828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.234 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds