Wall clock time and date at job start Sun Mar 29 2020 22:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 6 6 C 1.54903 * 101.66790 * 35.33394 * 5 4 2 7 7 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 8 8 C 1.34778 * 125.64817 * 298.32564 * 7 2 1 9 9 O 1.21591 * 119.99648 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00172 * 179.97438 * 8 7 2 11 11 C 1.46505 * 119.99898 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46711 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47135 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47600 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99454 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00089 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99684 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99994 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47506 * 89.99817 * 18 16 14 20 20 H 1.48507 * 109.46877 * 210.00106 * 18 16 14 21 21 H 1.48500 * 109.47067 * 329.99489 * 18 16 14 22 22 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 23 23 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 24 24 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 25 25 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 26 26 H 1.08995 * 110.72020 * 100.02165 * 4 2 1 27 27 H 1.08998 * 110.88682 * 277.25916 * 5 4 2 28 28 H 1.09002 * 111.06681 * 153.49006 * 5 4 2 29 29 H 1.09002 * 110.36788 * 204.23581 * 6 5 4 30 30 H 1.08998 * 110.36812 * 81.91638 * 6 5 4 31 31 H 0.96998 * 120.00011 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.47551 * 300.00402 * 11 10 8 33 33 H 1.09002 * 109.46480 * 60.00885 * 11 10 8 34 34 H 1.08996 * 109.47379 * 300.00431 * 12 11 10 35 35 H 1.09002 * 109.47273 * 60.00392 * 12 11 10 36 36 H 1.09004 * 109.46971 * 300.00385 * 13 12 11 37 37 H 1.09002 * 109.46836 * 59.99981 * 13 12 11 38 38 H 0.97003 * 119.99836 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2876 -1.5152 -0.6903 6 6 2.8146 -1.8784 0.7393 7 7 2.0301 -0.7124 1.1849 8 6 1.8086 -0.3579 2.4662 9 8 1.1442 0.6288 2.7177 10 7 2.3236 -1.0971 3.4685 11 6 2.0832 -0.7114 4.8613 12 6 2.7732 -1.7096 5.7932 13 6 2.5217 -1.3072 7.2478 14 6 3.2018 -2.2900 8.1657 15 1 3.7574 -3.1191 7.7528 16 6 3.1137 -2.1315 9.5325 17 7 3.7068 -2.9895 10.3335 18 14 2.1509 -0.6988 10.2464 19 1 0.7377 -1.1056 10.4523 20 1 2.7463 -0.3017 11.5477 21 1 2.2035 0.4501 9.3070 22 1 -0.3633 0.5246 0.8837 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3634 0.5029 -0.8962 25 1 1.3051 -1.4437 -1.6203 26 1 2.3529 -0.0431 -2.0201 27 1 4.1654 -0.8697 -0.6593 28 1 3.4859 -2.4127 -1.2762 29 1 3.6717 -2.0319 1.3950 30 1 2.1887 -2.7705 0.7166 31 1 2.8539 -1.8841 3.2678 32 1 2.4853 0.2865 5.0366 33 1 1.0112 -0.7110 5.0583 34 1 2.3715 -2.7076 5.6180 35 1 3.8452 -1.7097 5.5960 36 1 2.9231 -0.3091 7.4232 37 1 1.4496 -1.3075 7.4446 38 1 3.6446 -2.8782 11.2951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176387200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:44 Heat of formation + Delta-G solvation = -45.954703 kcal Electronic energy + Delta-G solvation = -17104.348534 eV Core-core repulsion = 14367.134530 eV Total energy + Delta-G solvation = -2737.214004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33518 -37.83540 -35.41632 -33.39779 -32.09202 -31.42191 -30.84622 -27.04482 -26.03308 -23.47680 -22.34580 -21.19309 -20.53541 -19.30507 -17.93357 -16.80575 -16.66508 -15.59044 -15.12660 -14.52825 -14.14555 -14.13691 -13.83715 -13.66898 -13.16826 -12.93592 -12.68302 -12.43219 -11.99983 -11.85792 -11.79357 -11.52260 -11.08355 -11.02453 -10.98009 -10.86472 -10.19068 -9.97082 -9.78924 -9.65068 -9.21273 -8.95856 -8.54356 -8.48685 -6.05199 -4.03759 2.65328 3.32825 3.33458 3.40206 3.45141 4.02332 4.26066 4.39444 4.45910 4.60113 4.93062 5.05309 5.19645 5.29119 5.30901 5.37668 5.47513 5.51497 5.57942 5.61353 5.71965 5.78721 5.94657 6.06546 6.12961 6.27978 6.44797 6.49337 6.75129 6.85855 7.11474 7.25444 7.38727 7.77108 8.08889 8.51507 8.73879 8.98614 9.57234 11.08074 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049437 B = 0.004035 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.244301 B = 6936.964981 C = 7377.446999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.072 0.928 4 C -0.128 4.128 5 C -0.132 4.132 6 C 0.098 3.902 7 N -0.638 5.638 8 C 0.719 3.281 9 O -0.590 6.590 10 N -0.740 5.740 11 C 0.133 3.867 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.394 0.606 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 2.687 -24.086 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.170 4.170 6 C -0.026 4.026 7 N -0.378 5.378 8 C 0.421 3.579 9 O -0.468 6.468 10 N -0.395 5.395 11 C 0.010 3.990 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.807 3.415 -23.580 23.990 hybrid contribution -0.169 0.186 0.464 0.528 sum -2.977 3.600 -23.116 23.583 Atomic orbital electron populations 1.22165 0.94961 1.02149 1.02873 1.21340 0.94443 0.96012 0.83384 0.90981 1.22783 0.97732 0.99601 0.96533 1.22786 0.98106 1.00966 0.95128 1.22266 0.95210 0.89176 0.95917 1.47698 1.56307 1.29792 1.03957 1.15503 0.80215 0.82935 0.79241 1.90898 1.44885 1.28448 1.82605 1.45366 1.57097 1.30969 1.06081 1.21514 1.00712 0.99249 0.77562 1.21703 0.99674 0.97528 0.96153 1.19502 0.96804 0.97433 0.91146 1.21100 1.32836 1.11445 0.90568 0.91031 1.25026 0.95211 0.96083 0.97164 1.69914 1.44200 1.36511 1.03642 0.86773 0.80377 0.83598 0.78549 1.20235 1.21378 1.18858 0.90930 0.92727 0.92003 0.90410 0.90022 0.90532 0.89821 0.90809 0.91518 0.77208 0.91994 0.91986 0.92194 0.92172 0.96268 0.96703 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.10 37.16 0.34 -1.38 16 2 C 0.15 1.57 3.45 -66.95 -0.23 1.34 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -0.85 6.50 -24.76 -0.16 -1.02 16 5 C -0.13 -0.83 7.09 -24.45 -0.17 -1.00 16 6 C 0.10 0.83 6.58 -2.53 -0.02 0.81 16 7 N -0.64 -7.76 3.06 -168.69 -0.52 -8.27 16 8 C 0.72 11.56 8.28 -86.92 -0.72 10.84 16 9 O -0.59 -11.72 15.39 5.29 0.08 -11.64 16 10 N -0.74 -11.15 5.52 -65.22 -0.36 -11.51 16 11 C 0.13 2.32 5.67 -4.04 -0.02 2.30 16 12 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 15 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 22 H 0.07 0.99 6.89 -51.93 -0.36 0.63 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.46 7.85 -51.93 -0.41 0.06 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.59 7.30 -51.93 -0.38 0.21 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.39 4.92 6.95 -40.82 -0.28 4.64 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 37 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -33.52 306.88 -8.17 -41.69 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.43 Total: -0.93 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.67 Total: -4.07 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.10 Total: -46.94 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.52 -8.17 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176387200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.264 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds