Wall clock time and date at job start Sun Mar 29 2020 22:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 6 6 C 1.54903 * 101.66790 * 35.33394 * 5 4 2 7 7 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 8 8 C 1.34778 * 125.64817 * 298.32564 * 7 2 1 9 9 O 1.21591 * 119.99648 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00172 * 179.97438 * 8 7 2 11 11 C 1.46505 * 119.99898 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46711 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47135 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47600 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99454 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00089 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99684 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99994 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47506 * 89.99817 * 18 16 14 20 20 H 1.48507 * 109.46877 * 210.00106 * 18 16 14 21 21 H 1.48500 * 109.47067 * 329.99489 * 18 16 14 22 22 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 23 23 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 24 24 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 25 25 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 26 26 H 1.08995 * 110.72020 * 100.02165 * 4 2 1 27 27 H 1.08998 * 110.88682 * 277.25916 * 5 4 2 28 28 H 1.09002 * 111.06681 * 153.49006 * 5 4 2 29 29 H 1.09002 * 110.36788 * 204.23581 * 6 5 4 30 30 H 1.08998 * 110.36812 * 81.91638 * 6 5 4 31 31 H 0.96998 * 120.00011 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.47551 * 300.00402 * 11 10 8 33 33 H 1.09002 * 109.46480 * 60.00885 * 11 10 8 34 34 H 1.08996 * 109.47379 * 300.00431 * 12 11 10 35 35 H 1.09002 * 109.47273 * 60.00392 * 12 11 10 36 36 H 1.09004 * 109.46971 * 300.00385 * 13 12 11 37 37 H 1.09002 * 109.46836 * 59.99981 * 13 12 11 38 38 H 0.97003 * 119.99836 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2876 -1.5152 -0.6903 6 6 2.8146 -1.8784 0.7393 7 7 2.0301 -0.7124 1.1849 8 6 1.8086 -0.3579 2.4662 9 8 1.1442 0.6288 2.7177 10 7 2.3236 -1.0971 3.4685 11 6 2.0832 -0.7114 4.8613 12 6 2.7732 -1.7096 5.7932 13 6 2.5217 -1.3072 7.2478 14 6 3.2018 -2.2900 8.1657 15 1 3.7574 -3.1191 7.7528 16 6 3.1137 -2.1315 9.5325 17 7 3.7068 -2.9895 10.3335 18 14 2.1509 -0.6988 10.2464 19 1 0.7377 -1.1056 10.4523 20 1 2.7463 -0.3017 11.5477 21 1 2.2035 0.4501 9.3070 22 1 -0.3633 0.5246 0.8837 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3634 0.5029 -0.8962 25 1 1.3051 -1.4437 -1.6203 26 1 2.3529 -0.0431 -2.0201 27 1 4.1654 -0.8697 -0.6593 28 1 3.4859 -2.4127 -1.2762 29 1 3.6717 -2.0319 1.3950 30 1 2.1887 -2.7705 0.7166 31 1 2.8539 -1.8841 3.2678 32 1 2.4853 0.2865 5.0366 33 1 1.0112 -0.7110 5.0583 34 1 2.3715 -2.7076 5.6180 35 1 3.8452 -1.7097 5.5960 36 1 2.9231 -0.3091 7.4232 37 1 1.4496 -1.3075 7.4446 38 1 3.6446 -2.8782 11.2951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176387200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:44 Heat of formation + Delta-G solvation = -68.517280 kcal Electronic energy + Delta-G solvation = -17105.326920 eV Core-core repulsion = 14367.134530 eV Total energy + Delta-G solvation = -2738.192390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38801 -38.82886 -36.93673 -35.19629 -33.63786 -32.19793 -32.14373 -28.79049 -26.77063 -24.97572 -23.46011 -22.22334 -21.94754 -20.47707 -19.12741 -18.70649 -17.67099 -16.89588 -16.44406 -16.16186 -15.51235 -15.37156 -14.85601 -14.72356 -14.39633 -14.07097 -13.85984 -13.76151 -13.52227 -13.17273 -12.74034 -12.70934 -12.57023 -12.08946 -11.91394 -11.78393 -11.71283 -11.61781 -11.58435 -11.33685 -11.18794 -10.76339 -10.23861 -9.50206 -8.29667 -6.33469 1.36973 1.38518 1.50588 1.59827 2.10876 2.36393 3.02125 3.06134 3.65943 3.69607 4.02315 4.08621 4.19734 4.25410 4.37116 4.47930 4.49122 4.66904 4.69135 4.85628 4.87129 4.88823 4.98053 5.02869 5.10926 5.13289 5.23015 5.37806 5.40881 5.47718 5.51876 5.54898 5.65091 6.06465 6.27179 6.74146 6.97230 7.31383 7.53924 8.86754 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049437 B = 0.004035 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.244301 B = 6936.964981 C = 7377.446999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.058 0.942 4 C -0.117 4.117 5 C -0.123 4.123 6 C 0.087 3.913 7 N -0.636 5.636 8 C 0.711 3.289 9 O -0.636 6.636 10 N -0.733 5.733 11 C 0.147 3.853 12 C -0.098 4.098 13 C -0.012 4.012 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.249 1.249 22 H 0.033 0.967 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.408 0.592 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 2.958 -26.208 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.076 0.924 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.035 4.035 7 N -0.374 5.374 8 C 0.413 3.587 9 O -0.517 6.517 10 N -0.389 5.389 11 C 0.023 3.977 12 C -0.136 4.136 13 C -0.050 4.050 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.173 1.173 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.244 0.756 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.046 3.649 -25.765 26.199 hybrid contribution -0.042 0.026 1.057 1.058 sum -3.088 3.675 -24.708 25.170 Atomic orbital electron populations 1.22104 0.95279 1.02019 1.02169 1.21608 0.94334 0.95987 0.84371 0.92426 1.22772 0.98016 0.99820 0.94859 1.22803 0.97712 1.01996 0.93611 1.22590 0.95201 0.88150 0.97530 1.47802 1.55891 1.30735 1.02994 1.15702 0.79982 0.82512 0.80494 1.90862 1.46845 1.30411 1.83628 1.45105 1.57282 1.31431 1.05071 1.21148 0.99812 0.98163 0.78611 1.21466 1.00204 0.98064 0.93849 1.19462 0.96385 0.96154 0.92960 1.21451 1.32438 1.11389 0.91567 0.94346 1.25967 0.96393 0.99048 0.97727 1.70055 1.46106 1.38772 1.04135 0.85706 0.79007 0.80306 0.77952 1.19220 1.20923 1.17256 0.94777 0.92391 0.89612 0.89081 0.88155 0.90552 0.87186 0.90291 0.90354 0.75612 0.92847 0.92784 0.91726 0.91723 0.96087 0.96199 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.10 71.98 0.66 -2.52 16 2 C 0.14 2.70 3.45 45.34 0.16 2.86 16 3 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.12 -1.16 6.50 31.87 0.21 -0.96 16 5 C -0.12 -1.12 7.09 32.07 0.23 -0.89 16 6 C 0.09 1.26 6.58 86.85 0.57 1.83 16 7 N -0.64 -14.70 3.06 -805.89 -2.47 -17.17 16 8 C 0.71 22.65 8.28 179.06 1.48 24.13 16 9 O -0.64 -25.73 15.39 -4.00 -0.06 -25.80 16 10 N -0.73 -21.44 5.52 -478.53 -2.64 -24.08 16 11 C 0.15 5.03 5.67 86.38 0.49 5.53 16 12 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 13 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 14 C -0.53 -30.43 9.66 25.60 0.25 -30.18 16 15 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 16 C 0.01 0.33 5.47 84.65 0.46 0.79 16 17 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 18 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 22 H 0.03 0.95 6.89 -2.39 -0.02 0.93 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.09 0.72 7.85 -2.38 -0.02 0.70 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 1.06 7.30 -2.39 -0.02 1.04 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.41 9.56 6.95 -92.71 -0.64 8.91 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.02 0.97 7.20 -2.38 -0.02 0.95 16 37 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -73.97 306.88 2.12 -71.85 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.33 Total: 11.12 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.78 Total: -3.32 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -4.81 Total: -100.61 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.80 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -73.97 2.12 -71.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176387200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.333 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds