Wall clock time and date at job start Sun Mar 29 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.70053 * 2 1 4 4 C 1.53335 * 109.67703 * 120.52165 * 2 1 3 5 5 C 1.53103 * 108.53227 * 52.04033 * 4 2 1 6 6 N 1.45754 * 110.38269 * 51.11823 * 5 4 2 7 7 C 1.33358 * 124.10403 * 340.45956 * 6 5 4 8 8 O 1.21287 * 118.24068 * 182.47960 * 7 6 5 9 9 C 1.50174 * 123.51164 * 2.51027 * 7 6 5 10 10 H 1.08999 * 109.40007 * 102.45792 * 9 7 6 11 11 N 1.46896 * 109.40348 * 222.28267 * 9 7 6 12 12 C 1.46893 * 111.00426 * 275.00219 * 11 9 7 13 13 C 1.53001 * 109.47555 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47352 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47212 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99736 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99781 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00271 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99650 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47460 * 89.99965 * 19 17 15 21 21 H 1.48500 * 109.46931 * 210.00106 * 19 17 15 22 22 H 1.48499 * 109.47180 * 330.00060 * 19 17 15 23 23 H 1.08995 * 109.46823 * 180.51430 * 1 2 3 24 24 H 1.09001 * 109.46541 * 300.51358 * 1 2 3 25 25 H 1.09000 * 109.47281 * 60.51261 * 1 2 3 26 26 H 1.09003 * 109.60436 * 171.95929 * 4 2 1 27 27 H 1.09001 * 109.60375 * 292.28184 * 4 2 1 28 28 H 1.09005 * 109.49478 * 290.74854 * 5 4 2 29 29 H 1.09000 * 109.20815 * 171.30600 * 5 4 2 30 30 H 0.97001 * 117.94909 * 160.75061 * 6 5 4 31 31 H 1.00898 * 110.99834 * 151.04132 * 11 9 7 32 32 H 1.09006 * 109.47085 * 300.00189 * 12 11 9 33 33 H 1.09007 * 109.47178 * 59.99297 * 12 11 9 34 34 H 1.08998 * 109.47083 * 300.00096 * 13 12 11 35 35 H 1.08995 * 109.46916 * 59.99834 * 13 12 11 36 36 H 1.09006 * 109.47333 * 300.00491 * 14 13 12 37 37 H 1.09007 * 109.47133 * 59.99723 * 14 13 12 38 38 H 0.97002 * 120.00342 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0463 -0.7333 1.2438 5 6 1.3694 -2.1046 1.3162 6 7 1.5029 -2.8044 0.0446 7 6 1.7807 -2.2044 -1.1135 8 8 1.8226 -2.8848 -2.1167 9 6 2.0453 -0.7318 -1.2418 10 1 3.1177 -0.5638 -1.3406 11 7 1.3587 -0.2146 -2.4330 12 6 2.1788 -0.4035 -3.6370 13 6 1.4319 0.1456 -4.8543 14 6 2.2864 -0.0506 -6.1081 15 6 1.5510 0.4908 -7.3070 16 1 0.5719 0.9303 -7.1866 17 6 2.1278 0.4239 -8.5575 18 7 3.3194 -0.1128 -8.7042 19 14 1.2159 1.0942 -10.0436 20 1 1.5628 2.5257 -10.2330 21 1 1.6073 0.3258 -11.2525 22 1 -0.2474 0.9641 -9.8266 23 1 -0.3633 -1.0276 0.0092 24 1 -0.3632 0.5218 0.8854 25 1 -0.3634 0.5058 -0.8945 26 1 3.1268 -0.8580 1.1725 27 1 1.8029 -0.1562 2.1359 28 1 0.3119 -1.9765 1.5477 29 1 1.8385 -2.6949 2.1033 30 1 1.3777 -3.7663 0.0398 31 1 1.1093 0.7558 -2.3139 32 1 3.1236 0.1275 -3.5200 33 1 2.3747 -1.4662 -3.7802 34 1 0.4874 -0.3857 -4.9710 35 1 1.2358 1.2081 -4.7113 36 1 3.2309 0.4810 -5.9911 37 1 2.4830 -1.1132 -6.2513 38 1 3.7253 -0.1595 -9.5840 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193646063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:06 Heat of formation + Delta-G solvation = -53.071896 kcal Electronic energy + Delta-G solvation = -17444.742734 eV Core-core repulsion = 14707.220106 eV Total energy + Delta-G solvation = -2737.522628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64326 -36.99933 -36.15265 -33.85786 -32.56887 -30.88637 -28.87305 -27.44459 -25.67711 -23.63781 -22.48300 -21.67209 -20.08396 -18.35282 -17.23546 -16.53730 -16.19017 -15.82919 -15.11444 -14.83403 -14.46018 -14.27092 -13.88341 -13.70577 -13.35090 -12.54157 -12.49733 -12.12853 -11.99949 -11.72444 -11.35504 -11.19799 -11.09828 -10.91168 -10.73751 -10.49044 -10.40138 -9.64735 -9.56964 -9.23368 -9.10799 -8.94521 -8.25290 -8.13087 -5.90403 -3.92164 2.76404 3.22140 3.38088 3.43858 3.48253 4.23965 4.35853 4.40431 4.54125 4.63075 4.81453 4.98730 5.09425 5.18758 5.35394 5.44742 5.45129 5.46798 5.70539 5.74718 5.89223 5.95975 6.07480 6.22078 6.49623 6.73546 6.81625 6.94279 7.22745 7.27352 7.40210 7.67099 7.79803 7.96877 8.11230 8.35694 8.54197 9.15168 9.71091 11.21176 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050800 B = 0.004198 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.044924 B = 6667.894808 C = 6899.252619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.131 4.131 5 C 0.111 3.889 6 N -0.727 5.727 7 C 0.528 3.472 8 O -0.531 6.531 9 C 0.079 3.921 10 H 0.073 0.927 11 N -0.669 5.669 12 C 0.055 3.945 13 C -0.104 4.104 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.396 0.604 31 H 0.343 0.657 32 H 0.021 0.979 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.013 0.987 37 H 0.017 0.983 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -0.565 24.297 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.169 4.169 5 C -0.013 4.013 6 N -0.381 5.381 7 C 0.313 3.687 8 O -0.406 6.406 9 C -0.035 4.035 10 H 0.091 0.909 11 N -0.302 5.302 12 C -0.073 4.073 13 C -0.142 4.142 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.163 0.837 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.036 0.964 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.227 -1.283 23.504 23.759 hybrid contribution 0.268 0.674 -0.620 0.954 sum -2.959 -0.609 22.884 23.083 Atomic orbital electron populations 1.21832 0.93645 1.02652 1.02176 1.21453 0.97604 0.99561 0.93153 0.89955 1.21934 1.00808 0.95391 0.98768 1.21366 1.00879 0.93655 0.85435 1.45503 1.73438 1.11457 1.07723 1.20133 0.75564 0.90506 0.82463 1.90763 1.50190 1.64737 1.34901 1.21356 0.98312 0.91624 0.92177 0.90922 1.60300 1.44983 1.23888 1.01060 1.22359 0.93451 1.02625 0.88879 1.21587 0.99720 0.98695 0.94196 1.19061 0.94681 0.97248 0.90579 1.21270 1.03138 1.38774 0.92328 0.92708 1.25031 0.95002 0.95536 0.98999 1.69974 1.15311 1.45146 1.23208 0.86599 0.80167 0.78821 0.82442 1.20767 1.21270 1.19870 0.92203 0.92781 0.91125 0.90920 0.89632 0.91512 0.90956 0.76842 0.83749 0.96033 0.89606 0.92585 0.93926 0.96887 0.96423 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.25 37.16 0.31 -0.99 16 2 C -0.10 -0.86 2.76 -90.41 -0.25 -1.11 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -0.83 5.67 -26.50 -0.15 -0.98 16 5 C 0.11 0.72 6.38 -4.39 -0.03 0.70 16 6 N -0.73 -7.47 5.25 -61.29 -0.32 -7.79 16 7 C 0.53 7.73 6.89 -11.87 -0.08 7.64 16 8 O -0.53 -10.52 15.72 5.55 0.09 -10.43 16 9 C 0.08 1.02 2.46 -69.08 -0.17 0.85 16 10 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 11 N -0.67 -10.42 5.38 -108.19 -0.58 -11.00 16 12 C 0.05 1.06 5.36 -3.83 -0.02 1.04 16 13 C -0.10 -2.33 5.41 -26.73 -0.14 -2.48 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -15.41 9.11 -34.44 -0.31 -15.72 16 16 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -28.11 13.29 55.43 0.74 -27.37 16 19 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.06 0.60 5.86 -51.93 -0.30 0.29 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.72 6.86 -51.93 -0.36 0.37 16 26 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.39 6.83 -51.93 -0.35 0.04 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.40 3.74 8.80 -40.82 -0.36 3.39 16 31 H 0.34 4.65 7.55 -39.29 -0.30 4.35 16 32 H 0.02 0.40 8.05 -51.93 -0.42 -0.01 16 33 H 0.09 1.90 6.47 -51.93 -0.34 1.56 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -34.98 300.75 -7.83 -42.81 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.17 Total: 0.84 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.09 Total: -9.03 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.17 Total: -46.16 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.98 -7.83 -42.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193646063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.264 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds