Wall clock time and date at job start Sun Mar 29 2020 22:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 9 9 H 1.09000 * 109.47486 * 59.99547 * 8 2 1 10 10 N 1.46506 * 109.47075 * 299.99478 * 8 2 1 11 11 C 1.34771 * 120.00011 * 154.99805 * 10 8 2 12 12 O 1.21582 * 120.00494 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99783 * 180.02562 * 11 10 8 14 14 C 1.46501 * 119.99679 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46942 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37865 * 120.00077 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00201 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00236 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47503 * 89.99905 * 19 17 15 21 21 H 1.48502 * 109.47374 * 209.99977 * 19 17 15 22 22 H 1.48505 * 109.46942 * 329.99924 * 19 17 15 23 23 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 24 24 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 25 25 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 32 32 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 33 33 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 34 34 H 0.97008 * 119.99717 * 335.00453 * 10 8 2 35 35 H 0.96995 * 119.99688 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.47064 * 299.99384 * 14 13 11 37 37 H 1.09000 * 109.47589 * 60.00128 * 14 13 11 38 38 H 0.97004 * 119.99916 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4415 0.0001 7 6 3.5704 -0.7203 -1.2490 8 6 2.0399 -0.7211 -1.2493 9 1 1.6765 -0.2073 -2.1393 10 7 1.5516 -2.1024 -1.2494 11 6 1.4228 -2.7716 -2.4121 12 8 1.7122 -2.2291 -3.4610 13 7 0.9731 -4.0422 -2.4122 14 6 0.8336 -4.7697 -3.6761 15 6 0.3171 -6.1587 -3.4018 16 1 0.1127 -6.4683 -2.3875 17 6 0.1045 -7.0337 -4.4457 18 7 0.3519 -6.6562 -5.6811 19 14 -0.5365 -8.7551 -4.1059 20 1 -2.0211 -8.7459 -4.1380 21 1 -0.0247 -9.6875 -5.1422 22 1 -0.0731 -9.2004 -2.7671 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7490 1.2492 27 1 1.6767 -0.2074 2.1392 28 1 3.9329 0.3071 1.2496 29 1 3.9334 -1.2349 2.1391 30 1 5.1704 -1.4415 0.0004 31 1 3.7175 -2.4693 -0.0002 32 1 3.9334 0.3075 -1.2488 33 1 3.9337 -1.2340 -2.1391 34 1 1.3209 -2.5353 -0.4125 35 1 0.7426 -4.4750 -1.5753 36 1 0.1329 -4.2424 -4.3234 37 1 1.8045 -4.8340 -4.1674 38 1 0.2026 -7.2720 -6.4155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243959976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:53 Heat of formation + Delta-G solvation = -62.698371 kcal Electronic energy + Delta-G solvation = -17717.632076 eV Core-core repulsion = 14979.692013 eV Total energy + Delta-G solvation = -2737.940064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01556 -37.98694 -34.09992 -33.28297 -32.49983 -32.16939 -29.75392 -27.05575 -26.06803 -22.98224 -22.25335 -21.40411 -20.38827 -18.92119 -18.08159 -16.14976 -15.60418 -15.26609 -14.94235 -14.66447 -14.25483 -13.97800 -13.68832 -13.34621 -13.05876 -12.73857 -12.20725 -11.95057 -11.91651 -11.88961 -11.59874 -11.49785 -10.96309 -10.90539 -10.86011 -10.57427 -10.29588 -10.26135 -9.97116 -9.32995 -9.29864 -8.69698 -8.56092 -7.68408 -6.11937 -4.18251 3.26792 3.32278 3.34781 3.51728 4.04939 4.35975 4.60015 4.66252 4.73641 5.04996 5.16461 5.20020 5.24106 5.36660 5.43884 5.45773 5.57650 5.60160 5.75800 5.79999 5.89110 5.99356 6.04927 6.16060 6.25018 6.26995 6.37675 6.43053 7.05584 7.20851 7.58276 7.62038 7.62568 7.97543 8.10902 8.81657 9.02916 9.40576 9.55401 10.98354 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037821 B = 0.004862 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.150992 B = 5757.049854 C = 5791.874894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.172 3.828 9 H 0.084 0.916 10 N -0.747 5.747 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.732 5.732 14 C 0.268 3.732 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.388 0.612 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 11.838 15.115 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.066 3.934 9 H 0.102 0.898 10 N -0.405 5.405 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.384 5.384 14 C 0.146 3.854 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.222 0.778 35 H 0.216 0.784 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.756 12.239 13.887 18.888 hybrid contribution -0.540 -1.399 0.837 1.717 sum 3.216 10.841 14.724 18.565 Atomic orbital electron populations 1.21805 0.94776 1.02333 1.01460 1.21417 0.96045 0.99668 0.94571 0.90169 1.21593 0.95692 1.00647 0.97306 1.21542 0.95477 1.00616 0.97950 1.21482 0.99840 0.99955 0.94250 1.21958 0.96008 1.00534 0.98577 1.20655 0.92893 0.82002 0.97884 0.89755 1.45257 1.72930 1.14543 1.07753 1.16176 0.78856 0.82032 0.83681 1.90856 1.57919 1.68789 1.30609 1.45710 1.68818 1.11634 1.12206 1.18947 0.97133 0.89748 0.79540 1.21235 1.45598 0.97393 0.93672 0.92024 1.24940 0.95296 0.98966 0.94822 1.69987 1.47468 1.36171 0.98724 0.86424 0.79025 0.83444 0.78039 1.20508 1.21032 1.19813 0.92908 0.92518 0.92311 0.92006 0.91967 0.92151 0.92272 0.92415 0.91745 0.91709 0.91106 0.77761 0.78351 0.95842 0.95845 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.04 37.15 0.34 -1.13 16 2 C -0.10 -0.97 2.51 -90.63 -0.23 -1.20 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.01 5.03 -26.73 -0.13 -1.14 16 5 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 6 C -0.12 -1.29 5.77 -26.73 -0.15 -1.45 16 7 C -0.13 -1.67 5.61 -26.70 -0.15 -1.82 16 8 C 0.17 2.29 2.23 -67.90 -0.15 2.13 16 9 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 10 N -0.75 -11.28 3.55 -58.64 -0.21 -11.49 16 11 C 0.69 14.49 8.53 -86.92 -0.74 13.75 16 12 O -0.60 -15.25 16.01 5.29 0.08 -15.16 16 13 N -0.73 -15.97 5.55 -66.41 -0.37 -16.34 16 14 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 15 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 26 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.79 7.61 -51.93 -0.39 0.39 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.39 4.92 6.67 -40.82 -0.27 4.65 16 35 H 0.38 7.22 8.34 -40.82 -0.34 6.88 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -32.13 303.65 -8.34 -40.46 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.31 Total: 6.01 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.83 Total: 1.64 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.16 Total: -53.58 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.13 -8.34 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243959976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.236 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds